RNA id: XM_043260425.1


Basic Information

Item Value
RNA id XM_043260425.1
length 3162
RNA type mRNA
GC content 0.51
exon number 16
gene id tex10
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16951179 ~ 16968820 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTCCCGACAAAGACTGCCATACAATCTTGATTTGTCACTATAATTTttagtatctatctatctatagatatatttcatttaaataaaatatttcataagtGATCCgatatctgtatttatttagcaaacattctaataaaaaaagctgCTGTGTTAAATGTAATCAGGCATGTGTTTAGACGGACTATTTTCTCAACAGAGGTTGATGGACCCCTAATGGCTCAACAGCAGCACGAGTGATTTATCTGTGtagtttttttttccctgaacgACTGAAGAATGAAAgcgaaaaagcaaaaaagacaaGGCGATTTTCAGAAAATTCAGCTAAAGGTTGGCAAAAAGAAGCCAAAAGCAGACAATGCAACAAACGTCAACTTCAGGTCAAAAGCTATCCATTTACCAGAGCAGCTAAAGCATGCGGATTCAGGGCCGACAACACACAGGCAGCTAGACATTAAGGATCTGTTGTCCAAGCTCCACCACATCAACAGTAATATAAAGCAGGGAGCCCTGGTGGGTTTGCGGGAGTTGCTGTCGGCTCAGCCTACTCTGATTGAGCTGCATGCATCGGCGGTGCTCTCTGAGGTGGCGGCACTCTTCACCGACAAGGATGGCTCCGTGCGAGCAGCTGCAGTGCGCCTGCTGCGTTTCATCGCTCAGTGCATCTCCGCTGAGCGCGTGGCTCCGTTCTTCCCCCTGCTCAGCGCCCACCTCACTTGTGCCATGACTCACATCTCGGAAGCAATTCAGGAAGATGCCCTCCGGGTCCTGGATGTGCTGCTGGAGCACTATCCCGGGCTTCTTTCTCAGAGGCATACTGTTCTTCTGACAAACTTTCTAGAGCTCATTTCCCAAAAGCGGAAATCTGGAACGGGGCAGGATAAATCCGGGAAAGGGAGCTTTGCTCTGACTATCAGCACGAGCCGCTCTGTAACGGCACAGCAGTGGAGGCTCACTGTGCTGCTTAGGTTGGGGAGTTTTCTGCAGGCAGTTGTCGAGGAAAGGCCTCTGGAGGAAGGGGTGACCAGCATGATTGGTCTTGGAATGTGGGCTGGAGAGAAAGGCTCGGTGACACCTGTAGATGTGAGCTGGGAGGAGCATGTCTTTGGCAAGGGCAGGATCCAAATGTTTGAAAATTCTGGGGCCGTTCCCACCCCACACTCCACTTATCGGCTAAGGCCGGACACTAAGGCAGGGGCTGGAATGAATAAGGAACTCTGCTCGTCTGAGACGGTGCAGGGCTTTGCAGGAACCCTGGTGCCTCTGTTGCTGGAGATCTGGGTGGAGGCGGCAGGTGGAGATCGTGTGCAGACAGACAGCGGCCACCTGCTCTCTGCGGAGGCCATGGCTCTTATGTTCCAGATCCTCACCATACTACAGTTACTGAGAAGACTTACCCCACAGAGAGACCAACAGGACATACTGGATGCCTGGTTCAGGAATTCATACCTGACGGATTTCAAACACCACTTCATGAAGAACTTCCCCTATGGCCTGCTGGAGGTGGCAAGACACAAGAAAAAAGCTGATGGAAAGAGAATGAGGCAGCAGCTAGCAGCTGGAACGGTTGCTGGGAGCAGTGTGGAACCGCTAGCTCTAAACGTGACGTTGTGTCAGGTTATGGTGACACTCAGTCTTCGGGGCCAGGACCACATAGAAGCCGAAGATGCTGACTGGCTCGGACCAATCCGGGTATTTATTAGGGATACATTGTCCAATGGGGGCAAGCTGAGCTCAAAGCACCTGGCAGCCTTACTGGAGGTGGTGTGGAGGATGATTGTCACTCAGCGCAGCCGCGtggTGACAGATGATCTCCTGCAGGCTGTGTATGTGCAGTATCAGCAGAGGAACCTGGCTGTGAATGTCCGCACTTTGTTGCTGCGCTTTTTCAGTCAACTCTACATTCAAGAGCATCAAAACCATCCTCATATTGCTCGGAGCAGGATTCTGGCGCGTTGGCTGGCGTCACTGCCGGTGCAGTTGGTTCAGCTGGGCAGCAGGAATCCTCAGCTCTCGGCACATCTGCTGGAGATCATCCATCCAGCTGCTGCGAGGGGCAATAAAGACCTTCTGCAGAGTCTTCAGAAAAATGCCTGCAGTATTTACGATCCACAGGAGGGCTGTGTGGTGGTGTTGCCTGTGGAGTCCCAGAAGAGGCTGGTTCAGATTCTCCATTTCCTGACAGTGTTTCCCTCAGAGCTTCTGGCATGTCTCAGTCAGGTCTGCAACACTGGGAGAGTGTCGGCTAGCCTGGCCACCATGCTAATACGCACCATACACCTGAGGTCTCCTCTGAGTGGCTGGTTGAGCAGTTCACAGGATGTGCCGGTGAAGGATGTAGATTACCTCAGTTTCTTTTTCACTACACTAACagGTTTCTCCTCTGAGATGCTTCGGGCCCTGCAGGACACAGATGAAGACAGCCTGTTGCCCTCCTCCACACTCTCACCCCTCAGCATATTCGCTACAACCCTGGAGCAGTTCCTTCACCATTGGGACATAGTGGAgGAGGTGTGCCACTGCCTGGACACTGTAGGATCTCGCTCTCAGTGTTTTGATGTGATACAGAACGCCATCATTAAGAATCTGTGTGGACTCGTGGTGGTGCCAGACTGTGTTTGTGCAGCGATTTTAAGGTGTGTTCCTCGGTTATTGGATGTCAACTTCCTGCCCAGCGACACACTCCTCCACTTCCTGTCTGACTGTTGCTTGAGCATGCTCAGTCTGCTGCTACAACTGGAGCAGAGCGCCCGCAAGAGGGATGCCGTGTGGGAGGCATGTTTTGCCGCGTTGAGCACAGTACCGAGGCTGCTGCGGCTGGTCTTGCAGTCTTTTCGCGTGTGTGACCTTTGTGAGGAGGAGCTCCCTGTGCTGGCACAGATCCTGTCGTTACTTCTTCAGCATACTCAATTACGCAACCACATGATGGCCAACGCCAGTCTACTGCAACATATCATACAGGACTTAACGcatttctaCGGTGGAGAGACTCGAGAGCAGTGGCTGACTGATTTGTTGTACTGCTACAGCGTGACGCTGTCTGGTCACCGGGCCAACATGGGCATGAGGGACATCTATTAATCACTAACCATCACAGTGTTCATTTCTGAGTTCAGCTATTTTGTACagaattaagaaaataaaacttgtGATAATA

Function

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167728 lncRNA downstream 37217 16913660 ~ 16913962 (-) True G113588
TU167727 lncRNA downstream 39297 16910335 ~ 16911882 (-) True G113587
TU167704 lncRNA downstream 55256 16894352 ~ 16895923 (-) True G113567
TU167706 lncRNA downstream 58601 16888321 ~ 16892578 (-) True G113569
TU167617 lncRNA downstream 128999 16821630 ~ 16822180 (-) True G113504
TU167747 lncRNA upstream 20890 16989710 ~ 16989978 (-) True G113604
TU167748 lncRNA upstream 22971 16991791 ~ 16992379 (-) True G113605
TU167764 lncRNA upstream 98703 17067523 ~ 17078008 (-) True G113617
TU167785 lncRNA upstream 218125 17186945 ~ 17187257 (-) True G113637
TU167838 lncRNA upstream 332509 17301329 ~ 17301558 (-) True G113672
XM_043261046.1 mRNA downstream 22493 16915518 ~ 16928686 (-) False erp44
XM_043261045.1 mRNA downstream 22493 16915518 ~ 16928686 (-) True erp44
XM_043261774.1 mRNA downstream 130424 16817726 ~ 16820755 (-) True alg2
XM_043260821.1 mRNA downstream 147072 16799360 ~ 16804107 (-) True LOC122360322
XM_043260820.1 mRNA downstream 151981 16784020 ~ 16799198 (-) False tmem245
XM_043260427.1 mRNA upstream 9952 16978772 ~ 16981410 (-) True rbm12ba
XM_043260951.1 mRNA upstream 41556 17010376 ~ 17022578 (-) False nacad
XM_043260950.1 mRNA upstream 41556 17010376 ~ 17022577 (-) True nacad
XM_043261555.1 mRNA upstream 58274 17027094 ~ 17035072 (-) True tbrg4
XM_043261554.1 mRNA upstream 58274 17027094 ~ 17035018 (-) False tbrg4
TU167506 other downstream 269001 16680197 ~ 16682178 (-) False esrp1
XR_006252795.1 other downstream 711673 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 722713 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 809944 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 937428 16012964 ~ 16013751 (-) True G113275
unassigned_transcript_2159 other upstream 21482 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1388597 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1523806 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1523806 18492626 ~ 18520287 (-) False mroh1
TU168645 other upstream 1680699 18649519 ~ 18650609 (-) True G114236

Expression Profile