RNA id: XM_043260444.1


Basic Information

Item Value
RNA id XM_043260444.1
length 501
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122360106
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2700321 ~ 2700949 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAGTTATGGAATATCCGCATCCATGCGAGACCTTGCTAGACTTTTCCATGCGCCATGGAAATCGCCTAGATGAATCTGTGGCACGTGGCTTAATGCGGCAAGCGGTGCTTGCAGCTAAACACTGCATTGAACGGGGTATTTTCCACAATGACATCAAGACGGACAATTTGCTGGTCAACACAGAGACACTGCAGCTCAaactaatagactttggctgtAGTCAACGTATTAACATGTCTTGTTCTGAAGATCATCAATATGCAGTCAAATCAACAGTCTGGTCTTTGGCTACAACACTTTTGGAAATAGTATGCGGAGAACGGCCCATAAGTGATTTTCTCTACAATGCACATCATCCTTTGACTCCAAATACTTCCACTGGTGAGTCTACAGCACACATcaataatacacacattaagTCGTGGTACAATATCAGAGTGTTTACAGTACCAATGACAAATTAACAAAGTGTAACACACAGGAGATTGCccttatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161823 lncRNA downstream 19983 2677203 ~ 2680338 (-) True G109522
TU161825 lncRNA downstream 19983 2677203 ~ 2680338 (-) False G109522
TU161810 lncRNA downstream 170322 2528804 ~ 2529999 (-) True G109509
TU161799 lncRNA downstream 176832 2523132 ~ 2523489 (-) True G109503
TU161796 lncRNA downstream 186754 2512775 ~ 2513567 (-) True G109500
TU161836 lncRNA upstream 107427 2808376 ~ 2808754 (-) True G109531
TU161843 lncRNA upstream 124479 2825428 ~ 2828623 (-) True G109538
TU161849 lncRNA upstream 141103 2842052 ~ 2842281 (-) True G109544
TU161940 lncRNA upstream 412893 3113842 ~ 3128916 (-) False G109600
TU161947 lncRNA upstream 642981 3343930 ~ 3418605 (-) True G109607
XM_043261422.1 mRNA downstream 689655 2000781 ~ 2010666 (-) True LOC122360634
XM_043260182.1 mRNA downstream 949349 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 980206 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 995600 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 1037694 1656548 ~ 1662627 (-) True nt5c3a
XM_043260895.1 mRNA upstream 198364 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 198364 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 198364 2899313 ~ 2908777 (-) False sim1a
XM_043260891.1 mRNA upstream 214706 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA upstream 238042 2938991 ~ 3064578 (-) False ascc3
TU161510 other downstream 1817569 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2067424 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 2405336 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 2421847 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 2422242 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 427112 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 1393808 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 2531262 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 2534697 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 2658561 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile