RNA id: XM_043260450.1


Basic Information

Item Value
RNA id XM_043260450.1
length 1454
RNA type mRNA
GC content 0.36
exon number 4
gene id LOC122360109
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12419118 ~ 12422119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGACTTGTGACTTCAGCTCTTGCTTTTGGACAGGGAACAATGAACCAACTAGTAACATATGAGGCTATGTCAGTTGTTGGGCCTCTAAATGAGGGAATTTTCTCAGTCTATAACATCTGCCGGTGTTTATTGGATGTTAAAGTAGATACCACCACTGATAAATGCTCAAATTATCAAGAAATAAGGAGACATATTGAGCATGCTGAGCAGTCCCTAAAAAAATCGGAGACAATGATTAacgaaaaactgaaaaatctgGATGAATGCATGTGCCAGTATTTAAGAGAGAAGACAAATCTGGAGAACctgaagacagaaaaaaacatggctgtttttaaattagaaCTCGACAAGAAATATATGGAAGACTTATTAAAGAATACAAATAATGCTCTGGAGCAGGCTACAAAAAAACTTGAATCTGCCAAATATGCCTCAAGAATAGAAGAAGAAAGGTTGGAAACAAATGGAAAAGTTTTCGCTGCAGGGGCGGCACTGCTTGTATTACCAATTGCTGGATGGATTGCTGgTCCAATAATGATGGCTACGGCAGATCAGGCATGGAAAGAGTCTTTAGATGCCATCCAAGCTGCTGAAGAGGAGATACAAAAGTGTAAAGAAAATGCAAACCGTTACACCAGACAAAAATTTGATTACAAGATAAACATCCTTAATACAGAAGCTGAAATTATACGGACCAATACGGCACTGATAAAAATTGAGAATAAgattaaagatgttaaaaagTACCTAAAGGAGACAACTGATATTCAGGAAAAGGTCAGAGGGGCTGTGATGTCTCTGAGTGTTCTTAGTGGAAGAGTCACAGTACtggagagacaaacacagtgttTCATCCTCTGGCAGCCTGTGGTACAAGCCATGGAAGATGTGGTGAGGGCAGTAGGAAATATCACTGAGAACTGGCTGCTTTACAGGCATGGTGCACCATTCTACATTAATGCTTTGAGAGAGGATGTTAGACGCCTGGCTTTATGCAACTCGCCCAATGAATCTAAATATGACTGGCAGATTGAAAGTGAATACATTTAATGACCATCTTCATGTAACTTGCATAGCAAtggatgaaataataaaaaaaatggatttgtaATTTGTAGAAAATtttgaatgttaatttttgCAATGAGGGAACAGTTTAGATTCGGCTGAAATGTTGTATTGTTGTATTGTATTCtgcttatgtaaaaaaaaaaaaaaaagcatgatgatttcatataaaaaagggtgtttgtttaaaattgcaataaccAATTGATAAACAGGAATTTACAAGAtcactgtaagaaaaaaaattacagaaaaaaaatgtacagtaaaaaaaaattggcagcTAGCTACTGGTTGTCAGTAATTTACTGTGACTGTtactcttttatgtttttaaaatgtatggcAAATAAACTATTGATTTAAATTAGCTGTGGTTGt

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164932 lncRNA downstream 50504 12366789 ~ 12368614 (-) False rxrbb
TU164931 lncRNA downstream 50504 12366970 ~ 12368614 (-) False rxrbb
TU164952 lncRNA downstream 53136 12363785 ~ 12365982 (-) False rxrbb
TU164895 lncRNA downstream 268241 12150542 ~ 12150877 (-) True G111716
TU164892 lncRNA downstream 279588 12139177 ~ 12139530 (-) True G111713
TU165001 lncRNA upstream 15306 12437425 ~ 12439653 (-) True G111788
TU165002 lncRNA upstream 17667 12439786 ~ 12440874 (-) True G111789
TU165007 lncRNA upstream 19834 12441953 ~ 12442613 (-) True G111791
TU165033 lncRNA upstream 57315 12479434 ~ 12479788 (-) True G111806
TU165034 lncRNA upstream 58605 12480724 ~ 12480975 (-) True G111807
XM_043261441.1 mRNA downstream 21868 12392767 ~ 12397250 (-) True LOC122360649
XM_043260344.1 mRNA downstream 40669 12365550 ~ 12378449 (-) False rxrbb
XM_043260345.1 mRNA downstream 40677 12365550 ~ 12378441 (-) False rxrbb
XM_043260346.1 mRNA downstream 40678 12365550 ~ 12378440 (-) False rxrbb
XM_043260342.1 mRNA downstream 40679 12365550 ~ 12378439 (-) False rxrbb
XM_043261760.1 mRNA upstream 69379 12491498 ~ 12497557 (-) True ccdc12
XM_043260442.1 mRNA upstream 155742 12577861 ~ 12599994 (-) True setd2
XM_043261936.1 mRNA upstream 384109 12806228 ~ 12825561 (-) False LOC122361014
XM_043261935.1 mRNA upstream 384109 12806228 ~ 12825561 (-) True LOC122361014
XM_043261932.1 mRNA upstream 416942 12839061 ~ 12944070 (-) False col14a1a
TU164609 other downstream 1007341 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1132686 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1535907 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1552690 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1670818 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1231941 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1812435 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2487206 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3046361 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3046361 15468480 ~ 15496375 (-) False rps19

Expression Profile