RNA id: XM_043260454.1


Basic Information

Item Value
RNA id XM_043260454.1
length 3749
RNA type mRNA
GC content 0.49
exon number 13
gene id lipeb
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16381325 ~ 16402875 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGAAGCGATAGGCGCTTTGATCTTTCTCCGACGCGTTATTGGCTATAGGTTTAGACGTGGGCGTGGCCGCCTGCAAGGTATGTCCAGACAGAACAGAGGGGGAGGTAATCGCTCGTGTTTGAGGAAGATGGCGTCTGCGAAGAAGTCTGGGAGCGGTGTTCTTGAAAAAGCAGTAAACAGAAGACGCTCGTCCAAACACAAAGAGGGTCCAATAGTGATGGACACCAAGGCAGTGTTCACTGCTTTATACGATGTGTGTGATGAAAATGCCGCCTTCTTCTCTGGGGCCACGAAGGGCCAAGCCGGAGACGCAGCCCAGCGCCTGGTGGACGCCATGACCACCATCCAGGAGCACGCCCGGAGCCTGGAGCCTGTCATCTCTGGATTCGCTGCTATCTATCACCATTTTGACTTTGACCCTCATATCCCCGCCAATGGATATCGCTCCCTCGTTAAGGTGGTGCGCTGTTGCCTCCTCCACATCATTCACAAAGGGCGCTATATCTCATCCAACAGACGCAGTATATTTTTCCGCGCGAGCCACAATGCAGCAGAGATGGAGGCGTACTGTAGTGCTCTGTGTCAGCTCAGGGCTCTGCTCTATCTAGCTCAGAGACTGCTTCATGACAACAGCCACGGCAACCTCTTCTTCCAGGAGGAAAGTGGCCTCAGTCAAAGCTTCCTGAGAGAGTACGCCTCCATGCACAAGGGCTGCTTCTACGGCCGCTGTGTTGGATTTCAGTTCACTCCTGCCATCCGTCCATGCCTGCAGTCAATTGCTATTAGTCTGGTTGCCTTCGGAGACAACTACAAGAAGCATCAGTCAGGGATAGGTGTAGCAGCCAGTTCTTTCCTGACCTCTGGGAAATATGCCATTGACCCTGAACTGAGAGGTCAGGAGTATGAACGTATCACTCAGAACCTGGATGTTCATTTTTGGAAGACATTCTGGAACGTAACAGAGACAGAAGTTCTATCCAGTCTGGTGTCTATGACGGCCACACAGGTGAAGGTGAATCGAGCTCTTTCTGTCCCCCCCATGCCCTTTGACCTGCCGCTGGTGGCAGATCCCACCCACACGGTGACTGTGTCTCCTCCCGCAGCTCATTTCGGCCCGGCGCCTGTGCAGATGAGATTGATCTCATACGAGCTGAGAGAAGGACAGGACAGTGAGAAATTACTAGCACTGTGTCGCTCAGAGGGGGGCCCGATATCGCTTTCTTTGGGCCTGAAGACAAAGCGCAGTCCTCCTTCCCCATGGCTGGTGTTGCACTTCCACGGAGGAGGCTTTGTGGCACAGACCTCCAAATCACATGAGCCGTATTTGAGGAGCTGGTCTCAAGACCTGAATGCCCCTGTCCTTTCGGTGGACTATTCTCTGGCCCCTGAAGCCCCGTTTCCTCGGGCTTTGGAGGAATGTTTCTACGCCTACTGCTGGGCCATCAAGAACCACAACCTGCTAGGTTGGACCggtgagcgtgtgtgtttggCCGGTGACAGCGCAGGAGGAAATCTGTGTGTGACCGTGTCGATGCGAGCCGCTGCTCACGGCGTGCGTATGCCAGACGGCATCGTTGCCGCATACCCCGCCACCCTGCTCACCGTGTACGCCTCGCCATCCCGCCTGCTCACCCTCATGGATCCTCTGTTGCCCCTCAGTGTGCTTTCACGCTGCCTCAGCGCTTACGCAGGCACAGATCCACAGGTGGAGAAGCAGGTGGAGAAGGTAAGCACTTTGAGCATGGTGAAGAGAGATACTGCCCTGCTGCTCAGAGACTTCAAACAAGGAGCTTCTAACTGGATCCATTCACTGCTGGACAAAGGGAGCGCAGACTCTGTAAGAAAGAGTGTTTCAGAAGCGTCTCTGACCTCTCCTCACGCAGACCCTCCGGTGTCCGGAAAAATGTCTGAACACTCTCTGGAGAAGGGTTCTCTGAAGAGCCAGACGTGCCAGGACTTGGGCACACACGCTAACAGCAGTGCCAGCAACGTACAGAAAAACGCCAACCACCTTAGCACCGCCACAGCCAACCACAACTCCATCCTTGACATCACACTGACGCCCGAGAGCAAGCCCGAGGATGTGAGTTTTTTCCTCTGCAAAGAGGTGGATCCCTCAGTATCagaatcattttcatttgtggcCATCCCGCCCCCTGGTGGCGAGGAGAACTCTGAGAATACCCGGGAGTTTCCGGAGGGCTTCGAGCCTCTTCGTTCAGAGCAATTAGCAGAGATGAACGTCCAAAGTTCGCCCATTGTCAGAAACCCCTACATGTCCCCTCTTCTGGCTCCAGACAGCATGCTAAAGGGACTACCTCCAGTACACATAGTGGCCTGTCATCTGGACCCCATGCTAGATGACTCTGTGATGTTTGCCAAGAGGCTGCGAAATATCGGTCAGCCAGTGACCCTGTGTGTCGTGGATGACCTTCCTCATGGCTTCCTTAGTCTGTCCCAGCTCTCGAGGGAGACTCGGGAAGCTGCTAACGTATGTATGGAGCGAATCAGGGATGTCTTCACCATGAAAGACCCTCCCCCAGAGATGCGCAAGCACCGCAAACTGGAACGGACCAACCAGAAGCCTTCTGCTACCAAACGAGACCACACTCAGCTCTCGCAAGTGACtgtgcaggaggaggaggaggaggaggaggaggagctatTTATTGGGGGAGGGGCTTCTGTTGTGGATGAGGAGGGTCTTGCTGGTTTTTACCCTCCTACTAAAGCTGAAGCTGAAAATATTCCAGCTTAGGTTTTGGCCTGTATGATACCAAAAGAGATTTGTATGGGTAGAGTAAggtcatattatataaataatgcagcgATAATAGCAGACTACTGTATCGtgtaaaacatgaaatgaaggaaaaacataaacatgaaggaattaaaggaatagttcacccaaaaaatacaatttctgtCATCCGTTGGGTAGTtacaaaatatgaatttctttgttctgcaaacacaaaggaagatattttgaagaaagtttgcaacCTGGCTGTTGTAGtgtatggaagtcaatggtgacccaaaacaaaacattttcatacagatttggaactacttgagagtgagtaaatgatcacagaatttttatttttgggtgaaatattcctttaaccaGCTATTACATGAAATCTTATGAAAGACACTAAGTATTTAGTTATAGAGTGGATGAAGTTCAAATTAGAGCAGATTTTCTGATTGTGTACTATTTCACTCCCTTTACACCTGTTTACCACCTTGCCTTTGTTGCATTATACCAGCACAAAAACTAATATCCTGCCTTCTACAAAAACATCCCAGCACATAAGCGTCATTAAAAGACATTACAAAAGGATTTATAAACCCAAGCCTCACTCCTTATAGCACTATAACAgttcttatattatatattcttaaATAGGTCTACAAACTGTGATTCAATATTGTACTTGTGTGCTACAGTTTAAACTCCATAGAATGCATTGCTGCTAGGCATCCTGGGGGTAACTGAcagaagcatttattaatggttgatttttttttcctttatagtagcttttgaattatttataacaccGAATTATAATATGGTGTTACTGTGTATGttaattaacttttataaatCCACCTGCCTCTCGTCTCCTAGAGGACGTCCTGTGCGAGTAGCGTTTGAATAGGATTTCTGATGCTGCTTTGTCCTCATAGAGTTGagtgtttattaaatgcaataaatctcGATCGAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167358 lncRNA downstream 23702 16352270 ~ 16357623 (-) False G113325
TU167360 lncRNA downstream 23702 16352270 ~ 16357623 (-) True G113325
TU167361 lncRNA downstream 23702 16352270 ~ 16357623 (-) False G113325
TU167356 lncRNA downstream 24409 16352270 ~ 16356916 (-) False G113325
TU167286 lncRNA downstream 185429 16194029 ~ 16195896 (-) True G113280
XR_006252836.1 lncRNA upstream 85246 16488118 ~ 16494739 (-) True LOC122360769
TU167382 lncRNA upstream 85729 16488601 ~ 16488822 (-) False LOC122360769
TU167484 lncRNA upstream 149736 16552608 ~ 16553858 (-) True G113405
TU167509 lncRNA upstream 183212 16586084 ~ 16682178 (-) False esrp1
TU167526 lncRNA upstream 185813 16588685 ~ 16589614 (-) True G113433
XM_043260458.1 mRNA downstream 3315 16360916 ~ 16378010 (-) True tmem145
XM_043262051.1 mRNA downstream 36369 16342510 ~ 16344956 (-) True LOC122361092
XM_043260452.1 mRNA downstream 44493 16332427 ~ 16336832 (-) False LOC122360110
XM_043260451.1 mRNA downstream 44493 16332427 ~ 16336832 (-) True LOC122360110
XM_043260805.1 mRNA downstream 53370 16324175 ~ 16327955 (-) True LOC122360309
XM_043260270.1 mRNA upstream 97 16402969 ~ 16405653 (-) True cd79a
XM_043260982.1 mRNA upstream 4280 16407152 ~ 16439455 (-) False arhgef1b
XM_043260981.1 mRNA upstream 4280 16407152 ~ 16439455 (-) False arhgef1b
XM_043260983.1 mRNA upstream 4280 16407152 ~ 16439454 (-) False arhgef1b
XM_043260984.1 mRNA upstream 4280 16407152 ~ 16439454 (-) False arhgef1b
XR_006252795.1 other downstream 141819 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 152859 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 240090 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 367574 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 519432 15857599 ~ 15861893 (-) True G113220
TU167506 other upstream 277325 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 587430 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1954545 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 2089754 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 2089754 18492626 ~ 18520287 (-) False mroh1

Expression Profile