RNA id: XM_043260492.1


Basic Information

Item Value
RNA id XM_043260492.1
length 3541
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC122360137
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24892846 ~ 24906521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCCCCTCCCCTCCACTGACACACACAAGACTACACGCGCACTAAAAACATGGCGGATAAACACTAACCCTCACACTTGAGAAATCACACAAAAACCTTTCTCCGCAAGAGAGGTTGGAATAATCTGGATCATGAAGAAACCAGTACCACAAAAAGCAGCTATTGAATGGAAAGATGGCAAACGGATCAAGCATGCTCGCAGTGGTCGCCCATCTCGTGTCCCATCACAGTACCAAGGGCATTTCAGTTGGGAGAAGTACCTAAAAGAAACAGGAGCAGTCGCTGCTCCTTCTCACTGCTTTAGACAGAGCACAACCCCTCCGGAGAATGAGTTTAAGGCTGGCATGAAGTTGGAAGCTCAGGATCCTAGAAACACTACATCTACCTGCATCGCTACTGTAGTGGGCCTGACGGGCTCCCGCCTCCGCCTGCGGCTGGACGGTAGTGACAACAAGAATGATTTCTGGCGCCTAGTTGATTCCTCAGAAATCCAGCCCATTGGGAACTGCGAGAAGAACGGAGGCATGCTGCAGCCACCACTTGGGTTTCGTCTGAATGCATCATCATGGCctatgtttttattgaaaacactAAACGGAGCCGAAATGGCCCCAGCTCGAATTTTTCACAAGCAAGAACCACCTGCCCCagagcaaaactgttttcaggTGGGCATGAAGCTGGAGGCAGTGGACAGGAAGAATCCTCACTTCATCTGTCCTGCCACGGTGGGTGCGCTGCGGGGCGTCGAGGTTTTGATCACCTTCGATGGCTGGCGGGGCGCTTTTGATTACTACTGCCGCTACGATTCCAGAGACATCTTCCCAGTTGGCTGGTGCACGCTCACAGGAGACAACCTCCAGCCGCCAGGAACTAAAGtcggATTACCAAAGGCACTGGGTGCACTTGGTGCCCTACCAGAGAGTGGCATAGAGGGGGCAGGCATGCCACCTACACCAGGCAGACCCCCACCCCAGAAGAAACGTAAGCCTGGCCGCAAGAAAACTAAACTGTCTGGGCCCTGGGGTCAGAAAGGACCACTTGGTCCCCAGACAAGCCAGTCTGGAAAGGAACTGGAATCTATTAAAATCCAGAAGAAACGAGGCCCTAAACCAGGGAGCAAGCTAAGCTGGGCCAAGAGGACAGCATGGCTTGAAGGAACAATTGGAGGTCCTGGTAGACCTATCAGCAAACCCAGAGGAAAACTACCAGCCAACTGGCCCCTGAAAGTGCAGCAGAACCCAACAGATCCCATTAAGATCCCAAAAAAGAGAGGCCCCAAACCTGGCAGCAAGaGAAAACCCAGATTGGGACCCAACCCTATGCCCACCTCCCCAAGCAGTAGCACTCCAGAACCAGACACCAGCTCAGTTCCGCTGGACAATGCAACCATTCCCAGCGCTGCCTTACAGGCCCCTACAGTATGTGTGTACCTGAATAAGTATGGGAAAGTGGGTCCCCATCTGGATGCACGCCGTATCCAGTCACTGCCAGATCACTTTGGTCCGGGCCGAGCTTCCTCTGTGCTGCAGCAGTGTGTTCAAGCCTGTGTTGATTGTGCACATAACCAAAGCTCAGTCTTTTCCTGCCTCAAACCAGGCCACGGAGGAGAGCTCATATCAGCCTATTTTGAGCAGCAGCACCACACTCTAACACTGCCGGCAGTGAACAGTGTGACGTATGTCCTGCGCTTCCTGGAGAAACTCTGTCACAACCTGCACTGCGACCCATTGTTCGGCAGTCAGCCCGTCCCCGTGGGAGGGCTTCACTATGACAGCCGGACATACACAGAAAGAAGAAACTTTGCAGAAAGTTTAAGTTCTGGACCCGGTCGGGGCACTAAGAGATTCATACAACATGACGCCTACAACAGCAACTCTGTACCGCACAAAATAGCCAAAAACCACCGTCTTTCCTCAGAAGAGCCCTTCCTGATGGAGAATGGGGTTGGCAGCTCTGAGGTGCTTGAGAAAACACACTTGTCTCCTGGACATGGCTTGGCAATGCGTTCCCTTTCTCAAAGTAGCAGCTCACCAGGGAAACTACATCGTCTGGGCTCAACGGGTTCCGGGCGTTTTCTGAGCTCGAGGGAAAGCCCACGACCAAGTGGACAAGACCCTAACCTGTGGACGGTGGAGGATGTTATGCAGTTTATCAGAGACATCGACCCTCAGCTTGGACCCCACGCAGAGCTCTTCCGCAAACAtGAAATTGACGGCAAAGCTCTCCTCCTGCTCCGCAGTGATGTCATGATGAAATACATGGGGCTGAAGTTGGGTCCTGCCCTTAAACTCACCTTCCACATTGACAGACTGAAACAGGGCCGTTGACCTTTATGGCACTTGAATGGGTTTTCGACCTTTACCCCTTCCGAGCACATTTCAAGATACACGGCATGCTGGGATCTTTGTGTCCCCCAGTACTGTAGCAGGTGTCGGCGAGCTTTCGAGCTCTGCCCATCGCTTTTACCTTTCATTTTGTCCGATAGTCCGTTTCTCCAGGttttaatgcattgttattAATTCTAGCACTGTTATAATCAGTTTTTATGACTGATATCCTTTTACGGTTGTCCTCGCGTTACACGGTTGTGTTAGTACCGTATCAGAACATTTCACCTGTTTGAACTCGACTGAAACAGTGAAGTGGACAATATAAAGGCCGTTTTTGGGCCTTGATTTGTACGACATACATTTACTTGTATATTTTTCATCCTACATCAATAAGGGTGTTTTGTATGGCTTTTTTATACAAGACAGATTTTCTTCAATTAACTGCAGATAAACACTAGACCTCCACCATTATGCTGGAAATCACTCCGGCCTGACACCACAGAGACCATTACTCTCATTACTTTCTCCATACTTTATACACATATTTAGGAATTAAGATGCGGTCACACTAGACTTAGAGCATGCAAAACTACTAGAGAACAAATATGGGCTTACAGGATATGATGTCAGTCTCTGTTTAAATCTGTTGTAACTGACGCATTAACGATGCTTTTACAATGTTATATTATCAGCAACACTGCAGACAGTACAGTGTTAAAGTTATTATTCTTTGCATTGCATTGGTCCAAAAAGGTCAATGTGTGACATTTAGATCCTCCGTTGGTCAGATGTCTTTTTGTCACACCAATTAGCAGttcaaagcaaagcaaagcacaAGACTTATTACTTGCATTCATGCAACTTGCATTCATGTGTTCAAATGCGTGTGACAGGAAGCCTAGTATGACCGCACCTACTGCTACATACTGCTATTATACACTCTGCCTGTATTTTATATCGTGTTGATGTTTACATTGTCTTTGTTGTTTGTACTTTTATACAATATTGTAGAGTGCATACGTTGACAGCGTTATACTCTAAGcttcaattaaaaatatggaGCTTTTctactgttgtgttttttttttttgtttaacgtTGTCTTGTTCGTTTCAATGtgcatactgtattttttgtttataaatgattttgttataagctttattgatataaaataaaatgacacgaGTTAGAGTTTTAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171502 lncRNA downstream 57482 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 58888 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 69436 24821501 ~ 24823410 (-) True G116174
TU171248 lncRNA downstream 419481 24414226 ~ 24473365 (-) False serinc2l
TU171572 lncRNA upstream 172746 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 270931 25177452 ~ 25178607 (-) True G116242
TU171609 lncRNA upstream 304872 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 304872 25211393 ~ 25557473 (-) False G116237
XR_006252863.1 lncRNA upstream 758198 25664719 ~ 25702534 (-) False LOC122361130
XM_043261006.1 mRNA downstream 46693 24839929 ~ 24846153 (-) True ctps1b
XM_043261009.1 mRNA downstream 53059 24836086 ~ 24839787 (-) True taf12
XM_043260826.1 mRNA downstream 84176 24626594 ~ 24808670 (-) False ptprub
XM_043260010.1 mRNA upstream 114195 25020716 ~ 25033341 (-) False eva1ba
XM_043260009.1 mRNA upstream 114195 25020716 ~ 25033341 (-) True eva1ba
XM_043260692.1 mRNA upstream 147177 25053698 ~ 25071225 (-) False stk40
XM_043260691.1 mRNA upstream 147177 25053698 ~ 25070384 (-) False stk40
XM_043260690.1 mRNA upstream 147177 25053698 ~ 25070384 (-) True stk40
TU171232 other downstream 564873 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1217548 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1283005 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1368464 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1958879 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 761298 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1473151 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1900599 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1903796 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1903796 26810317 ~ 26812909 (-) False G116632

Expression Profile