RNA id: XM_043260512.1


Basic Information

Item Value
RNA id XM_043260512.1
length 3489
RNA type mRNA
GC content 0.45
exon number 14
gene id kpna5
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23339451 ~ 23348014 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAGGTGACGTACCTTACCAGTGTACGCCATATTGCCCTCAGCTGGAGGAACTCGGGAGGGTCTTGAgagaaatttaaaaacacacggCCAGTACATCCCTCTCCGGTCTACGACTAATGGACGCAATGGCAAGCCCAGGCAAAGAAAGCTATCGAATGAAGAGCTACAAGAATAAAGCCCTGAACCCCCAGGAAATGCGGAGACGGAGAGAGGAGGAAGGGATACAGCTCCGTAAACAGAAGAGGGAGGAGCAGTTGTTCAAGAGGAGGAATGTGTCTCTGCCACCTGGTGATGAGTCCATGCTCGAATGCCCCATTCAGGACCCTGATATCAGCTCCACTGTACCTGTATCAGGTGAAAGCGTTATAACCCAAGACATGATTCAAATGATCTTCTCTGaggatccagaccagcagcTCATAGCCACTCAAAAGTTCAGAAAGTTACTCTCTAAAGAGCCCAATCCTCCCATTGATGAGGTCATCCACACATCTGGTGTTGTCAACCGGTTTGTTGAATTCTTAAAAAGGAGTGATAACTGGACTCTGCAGTTTGAAGCTGCCTGGGCCCTGACCAACATAGCCTCAGGAACCTTCCTACACACCAAGGTGGTAATTGAGACGGGGGCCGTGCCCATCTTTATAGAGCTACTCAACTCAGACTATGAGGATGTACAAGAGCAGgCGGTGTGGGCATTAGGAAATATAGCTGGGGATAATGCAGAGTGCAGAGACTACGTCCTCAACTGTGGCATCTTGCCTTCTCTTCAGCAGTTGCTTGCAAAATCAAACCGTCTCACTACCACCCGGAATGCTGTGTGGGCGCTGTCTAACCTGTGCAGAGGGAAAAATCCACCTCCAGACTTTGCAAAGGTGTCACCATGTCTGAGCGTGCTTTCCAGATTGCTCTTCAGCAGTGATCCTGATGTTCTTGCAGATGCCTGTTGGGCACTTTCATACCTGTCTGATGGACCCAATGACAAAATCCAGACAGTTATTGACTCAGGAGTATGCCGCAGGCTGGTGGAGTTGCTCATGCACAGCGATTACAAGGTGGTGTCCCCTGCACTAAGAGCAGTGGGGAACATTGTAACAGGAGACGATATTCAGACCCAGGTGATTCTGAACTGCTCCGCTCTACCCTGCCTGCTCCATTTACTCAGCAGTCCAAAGGAGTCCATCAAAAAAGAGGCCTGCTGGACTGTCTCCAATATCACAGCTGGGAACAGAGCGCAAATCCAGGCCGTTATTGATGGCAACATATTCCCGGTGTTAATCGAAATACTGCAGAAAGCTGAGTTCCGCACCAGGAAGGAGGCCGCGTGGGCAATAACCAACGCCACCTCGGGAGGCACGCCAGAGCAGATTAGATACTTGGTGTCTCTCAACACCATAAAGCCCATGTGTGACCTGCTGACGGTGATGGACTCTAAGATTGTGCAGGTGGCTCTGAATGGCCTGGAGAACATCCTCAGACTGGGAGAACAAGAGTCCAAACAGAACGGAACAGGCATCAATCCTTACTGTGCTCTCATCGAAGAGGCTTATGGCTTGGACAAGATTGAGTTCCTGCAGAGCCACGAGAACCAGGAAATCTACCAGAAGGCCTTTGACCTGATCGAGCACTACTTTGGCGTGGAGGAAGAGGACGCCAGCATCGTCCCGCAGGTGGATCAGAATCAGGGCCAGTACATTTTCCAGCAGTCTGAGGGACCGATGGAAGGCTTCCAGCTCTAACCTGTATCCCTGTCCTACTGGCCAAGCTTCAGGCCTTGCTTCCTCCATCCTGCCTGGAGTCTTCTCTCCCTCCATCTCCGCAGCGCAGGACCTCAGCTCCAGCCTCGCTTCAAGACACAGAGGCCCGTACCTGCTCCTCACAGCAGAGATGACATGCCTGCGCCCGCCGCCTAACCCCCCATCCCCCATCAAATCCAACCCACTAAATCTTCCATTTCCATCCTGCCCATATTCCAAGCTCCGTTTATCGAGAGAGAAAATCTGTTAGATGGACCGAGGAGGGCAAAGCTCAGAGTCTGTAGTTTAAGTCCTCTTGAGACTTACAAAAAGCATTTTGCTTTCATTGTTGTTaatgttattatgattattagaCATTGGCACTGGTGTTCTGTAAAGTAAACTTTACTCCATATCCCTTGAGAAATGTGAAACTACCTCTTCAATCAGAAAACGAAGTGTGCGACAAACACCCAGCCTTTAGCTCTGACAGTTCTCTTCTCTTGTGAAGTAAATGCTTCTATGCAAACATGTATCGTGGCAGAAATAACACGGCCAGACAAAGTAACTAATGTATTTGCATTGATACATTTGCATTGGATGAATTCCCTGACTCTGTGTGGCAGCGCACAACAGTTTGTCATGCCATATTTGTCCACAATGCATCCTGAGGGCATGTCAAGCCCAGTTACACTATTTATTCTGACATTTTGTTAACTAGCACAGCAAACTGCTGACCTGGGAGATTTAAAGTCgtatttattgtgctttttagaAGGAACCGGTCTGTGGGGTCCCGGCTGTTTAGAGAGTAGCGCACAGCCCGCTTCCTCTCAGCCCTCGCTTTGCTGATGCTCTCGAAGCATTACGAGCGCTGCATGCAATTATTTAAGTGTGGTCACGCGATCACCAAGATGgagttgtttgtgtgtatgcatatcATTGGGTTGTTTCTCATCTCACTCGGAAGGTGTGTCTTTTTTTGCGCTGACTagctttaatttgatttatttaatgttcaCAAGGTAGAAAGTGTTGAGATTtagtaaaatgtgtatattatatatacattgagGGTAGAAGGAGGATGCTTTTCAGTGAAATGGTCTTGGTGTGCAGTGAAATACTAACGTAAAGGAAAGTATCTTTCATAACATTCTTCATTCAAAGAGCTTTTCCTCATATGGTCCCTACTAGTGCTAAAATTTCCTCCTGTGTTATAATTCTTGTAATGATatatcctctttttttttttttttttttttttttttttttttttttcaaatgaacttACTTGCAGGAGATTGCCTTAGTCATGAAACTTGTCTGGCAGAAAGTTCTTCTCAGTTTTCAGTTGTTTGTGTGATTATTTACTTCCTCTTTACGTTCTGCCCGTAAACGACTTGCAcccatttttctttgaaacaagCTTGATTGATCCAAATAAGAGTTATAATAATGGAAAGTcagtatatttacaaaaaaaaaaaaatcattaagattGTAAAATTAAACTTTATCAAGCACATTCGATTGTGTATAGTTTTGTAAAAATTCTCATGTTTGTACAATGTTTTCtaagtttgggtttttttcgcatcagaaaaaaaaaaacatctgtgtttTAAGTTATCATTGGTACAAACCTACAGTACAGAGGAGATCATTGCTTTCCTCGAAGACAAATGTTGATATTGTGTGAAATGATGTAgacaaataaacagacaaataaaatgttctgttaCACATTGAAA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15042 KPNA5_6; importin subunit alpha-6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 11558 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 149801 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 171511 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 261581 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 261581 23074303 ~ 23077870 (-) False G115563
TU171122 lncRNA upstream 467883 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 468886 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 472505 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 472505 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 472838 23820852 ~ 23822288 (-) True G115914
XM_043260897.1 mRNA downstream 24690 23306694 ~ 23314761 (-) True cnot3a
XM_043260092.1 mRNA downstream 72979 23264286 ~ 23266472 (-) True LOC122359881
XM_043260403.1 mRNA downstream 77497 23258003 ~ 23261954 (-) True LOC122360080
XM_043260239.1 mRNA downstream 84875 23251560 ~ 23254576 (-) True LOC122359973
XM_043261565.1 mRNA downstream 89654 23244256 ~ 23249797 (-) True styk1b
XM_043260514.1 mRNA upstream 10459 23358473 ~ 23361374 (-) True rwdd1
XM_043259989.1 mRNA upstream 14323 23362337 ~ 23367373 (-) True calhm5.1
XM_043259987.1 mRNA upstream 19487 23367501 ~ 23368953 (-) True calhm6
XM_043261198.1 mRNA upstream 41409 23389423 ~ 23403630 (-) True mms22l
XM_043261851.1 mRNA upstream 179074 23527088 ~ 23536822 (-) True fbxl4
TU170599 other downstream 405484 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1250397 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1370916 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1535647 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1634492 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 171794 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 240171 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 321884 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 978693 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2319805 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile