RNA id: XM_043260517.1


Basic Information

Item Value
RNA id XM_043260517.1
length 1958
RNA type mRNA
GC content 0.51
exon number 15
gene id polr3c
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13042826 ~ 13048403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGATTCGTTCGCTGATCAGGCGTCACACTGGAACTCTACATGACCACGGAAATTCGCCAGTGCTGATCATTACACACCGCCTGAACAACACACGTGATATTACAAAGCGAGATTAAAACTGTAAACCCGTACAACTAGATACTTTTTAAAGATGACAGCGCAGGAGGTGCGTCTGTGTGGGCTGCTGCTGCAGGAGCACTTTGGAGATGTGGTGGAGAAAGTGGGCACTCATCTGATCCGCAGTGGAGTTCTGACATTGCGAGCGCTTGCCCATGAGACCAGACTTCCCCTCGACCTGGTCAAGAAGTCTCTGTGTGTGCTGATGCAGCATGGGATGTGTTTGTTCGGTGCCGGGCGTCGTGGTCCAGCGGGACCCGTGGAATACCGCGTCATCTGCGAGCGCATCCTACACATGCTCCGTTATCCGCGCTACATCTACACTGCCAAGAGTCTTTATGGAGACACAGGCGAGCTCATTGTGGAGGAGATTCTGCAGAGAGGACAGATGACTATGAGCAGCACAGTCAAGACCGTAGCTGACCGGCTGACCCACAATATGCCAGAGGGCCAGAGTATGGACTACAGTGAGGTTGTCTCTGCGTTTTCTCGGTTGGTGGAGACTCATTTCCTGCAGCGTTGTCCTCCAGCGGCCTCCTCGGGACCATCGAGCTCAGGAGCAGTCAACACTCCCCTTCCAGCGGCGACGCAGCCCACCGAACCAGAGGAACACCCAGAATGCTACAAACTACCCTATATCAATCTCACCGGTAAAGGAAAACGCAGGCGCTCGAGCGAGGATGGTGAAGCTGACCAGCGTACGGCAAAGAAAGCCAAAACAGACAATAGTGAGtgtGGTGACGAAGGGATCTATTGGCAGGTGAATTTTCAACGCTTTCACCTGCACTTCAGAGATCAGGCCATTATTAGTGCTGTTTCCTGTAAACTCGATCAGACCAGCAGCGAGATTGTTAGAACCATGTTGCGGATGAGTGAGGTTACAACGCCGGCTCACGCTGTTTTCACACAAGCCCTTTCGGCCAATGAGATTTTCAGATCTCTTCCATCCAGTTACAACATCGCCAGACCAATTTTAGACCAATACCTCACTCTGCTTGTGGATGATCCGATGGAATTTGTGGGGAAGACAGGTGACAGTGGAGGAGGAATGTATGTCGTCAATTTACATCGTGCCCTGGCTAACCTGGCAAGAGCTACCCTAGAGTCTGTGGTCCAAGAGAGGTTCGGTTCTCGCTCGGCTCGAATCTTTCGTCTGTTACTGCGAAAGCGGCACCTGGAGCAGAAGCAGGTGGAGGATTTTGCCATGGTTCCTGCCAAAGAGGCCAAAGACATGCTGTACACACTCCTGTCTGAGAACCTGGTCCAGCTCCAGGAAATCCCCAAAACGCCGGACTACGCCCCTTCTCGAACCTTTTACCTGTACACAGTTAATCAGCTGCCCACTGCCAGGCTACTTCTGCAACACTGCTACAAGACAGTTGGCAACCTGATCGAGAGACGGCTGTATGAGACCAAAGAGAACAAGCGCCTTTTGGAGAAGTCTCAGCGAATTGAGGCCATCCTGGCATCCCTGCAGGCCACAGGAGCCGAGGCGGCCCAGCTGACGGAGGTGGAGGAGATGATCACCGCTCCAGAACGACAGCAGCTCGAGTCTCTACGGCACCACATTAACAAGTTGGACTCCAGTGAAAATCAGGTGGATGAGACAATATTTCTTCTGGAATCCTACATTAACTCTACACAGGCCTCTCGCTGACCGTTTTTATACAACTTTAGGCTAGTTCTAAAAATTGCTGATGTTTGTTTGAAAAGAAATGGGTCGCTCAGagatgtttatttcttttgcgACACGGAGTGACTGATTTATATGACTGAGTATTTTGTGTAGCCTTGAgcaattttattttccacagaaaaaaataaagttgtaattctttta

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 16697 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 390420 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 418207 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 430832 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 552706 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 139516 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 148475 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 165527 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 168800 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 240802 13289205 ~ 13292423 (-) True G112299
XM_043260696.1 mRNA downstream 67032 12947950 ~ 12975794 (-) True deptor
XM_043261932.1 mRNA downstream 98756 12839061 ~ 12944070 (-) False col14a1a
XM_043261934.1 mRNA downstream 99122 12839061 ~ 12943704 (-) False col14a1a
XM_043261928.1 mRNA downstream 99122 12839061 ~ 12943704 (-) False col14a1a
XM_043261930.1 mRNA downstream 99122 12839061 ~ 12943704 (-) True col14a1a
XM_043260518.1 mRNA upstream 6994 13055397 ~ 13060927 (-) True gba
XM_043261648.1 mRNA upstream 12632 13061035 ~ 13066879 (-) False dap3
XM_043261646.1 mRNA upstream 12632 13061035 ~ 13066043 (-) False dap3
XM_043261647.1 mRNA upstream 12632 13061035 ~ 13066043 (-) True dap3
XM_043260522.1 mRNA upstream 52455 13100858 ~ 13116095 (-) False rusc1
TU164609 other downstream 1631049 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1756394 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2159615 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2176398 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2294526 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 605657 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1186151 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1860922 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2420077 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2420077 15468480 ~ 15496375 (-) False rps19

Expression Profile