RNA id: XM_043260520.1


Basic Information

Item Value
RNA id XM_043260520.1
length 8126
RNA type mRNA
GC content 0.45
exon number 12
gene id rusc1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13100858 ~ 13116095 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatgagagagaggaggagaggggaAGGAAGGGAGGGTCGAGACGGGAGGAAAGACGAGAACGGCGTATAATAATTTCAGAGTCATGGCTTGTGCGACGGAATAGAGATCGAGATCAAGAAGAACGCGTCCTTTATATCCTTCTGGAAATGAGGTACTAACTAGATCCAAGATGTGACCCCATATGTTTACAAACTCCTTAGAAAAACACCAGAATAATAATCAGGATATATACAATCTATCCCACCATGCACCCCTCCTCTCGTCCCTCTGTGCCCCCACGTTCCCGCAGGTTTGACAATAGGCGTACAGAGGTAAAACCAAGCCAAGGGGCTAAGAGGGAggacaaaaacattaacactgCATCTTCATCTCCTCGCCGTGGCACTCGGGGTCCACCCGAGTCTTCCAGATTGAAGGGCCCCGGTCAGAGTGCACGAGCCCCAGTGGTTCAATCCAAACTGGTTCGGCCACAGAAGAATGGTGCTCACGCAATACCAGCAATCTCAAAACCAAAAAGTGGACACACTGTATCAAACCTAGTCCCAGCTGTGGATCCAAACTGCAACGAGCCCAGCCTACCTTGTCTGTGTTGTGATGGCCATTCACCTCAGGATAGCAACAGCCTTTTTAATCACAACCATAACAACAATAACACTGTAAACATAAGGCAACAAATGAAGCTGCCACCACCACCACCCCCACAGAAGGAATTGGTAGCTCCAAAACAAGACATTAAAGAAGATGAGAGTCAGCCAGAAGTTAAGCAACCTCATGTCATCCCAgtggaggagaaagaggaggacaATGGAAACGTGGATGAGAAAGAGGGTGGTCAGCTCAAAAATGATGACTGTAGTGTGAATGTGAATGCTAATGTTGATGAGAATGGCAATGGCAATTGTGATGGAGAAGATGacgaagatgatgatgatgaagatgatgatacTCTTGTCCCTTCTTGCTGCAACTGTCCAGAATCCATGCTGGACTTCTCCCTTACATCTTCTACCTCATCTTCATCCACATCCATCAGCAGCTGCTCAGATCTGGAGTGTGACTGTCCTGAGACATTTTCATTGTCATCCCAGGACCAAGAGGCCACTGAATGCTATCTATCATCTCAATCCCCGGTCTCCAACTGTCCTGACTTTCAGTCACTGGATCTCAACACTTCTGCAAGGTCACCTTGCTCTTCTGATGAAGGCTATCCATCAGCCCCTTGCTCTCCATCTTCTGACTACATAGAAAGCAAGGGATCAGaaggaaaatgtattaaagtggATCTCCTCCATTTTTTAGACTCCATAGAAGAGTTGGGAAAAGTGGATCTGTTCTACCGCATTGTTAGGCTGGCACACTGGGAACTGGACGGTGAGCTGATTGTCAGAGATAGATTGGATCACCAGCAGAAGCTTCAGAGGGTTAACAAAGAGGTGAAGTTGGCTTATCTTGTGAAACTTCAGGAGGAAGGGTTAGACTTTGACAATGAGGATATCACTGGAGTTTTGGATGAAATGGGCAACGTTGACATTCCATGGAAGttgtataaaaacaacaaatcaagTGAATCCCTGGAATTTTCTGATGCAGGGGTAGATATGACAGCTCCATCTGATCTTGAAACCCCTGCCTCAGATTCACTTGCTCCATCTCCACTGGAGCCTCCTCCTCGGCCCCCAAAACCTCCACTGAGGCATGTGAGTGCCCACCCAGAATCACACACTTACGAGAACATCAGTGGACATGTCTTCTCAGTCTCATCCACCAATGACACAACAAATTTTTCTACAAGTGTCCCTGTTCCTACCTTGCCTGCATTGTCATCCTCATCCCCAGATTTGAAACCTCCTgcccttcctcctcctccatcacAGCCTGTGCCCTACTTCACCCTAAATACAGACAGACCTGCTCTCACCTCCCCTACACCACCTATTCCTCCTCCGAGAAGACGTCATAAAGCCCGTTTAGAAGCTCAGAGACTTGCTGAGCTTCAAAGAGAAAAGACTCCTCTGTCCTTTCCACCGCCAACGTCCAGACCTCCTCCATTGCCACCTCCACCTGTGTCATCCTCGCCTCCAGCTATTCCACCTCCACCATCACTCCCACCGCCTCCATCTTTTCACGCTCTGGATGTGGAAATCCGAAAGTTGCTTGCTTTAGCAGGCCTCACCCAAGCTGAATTGCTTAAACTTAGTCCCGAGTTGGGTGTCTGTGTAGATGTTGTCCTGGAGAACGAGCAACAGGCAATGTCTGATGTCTCTCAGATTGGAGAAATCAGCATAAACAGGACACGCAAGGAAGAAGGTGTAGATAAGGGGTTGGACTCCAGATTAAAAGAAGGATCCAGATTTGGGAAAGACAGATCTTCAGCTGTAAATGAATTAGATACTCTCAGTGAAAAAGAAGTTTGTAAAGATGAACAGAAGGAAACAAACAGGACAACTTCTTTCACAGAAATGGCAAGACGACGTAAGAGAAATGGTGGACAGTGTAATCATAGCTGCAGTTGTGGTTTTGGATCCAATGTTAGCCTTTCTCCCAACTCATATTACAGCACTGATCTTAGCAATACAAACATCCCGAATGTTAGCTTTGGAAGCTTTGATTATACTTCAGTGATTTCAGATacccctcctcctccacctccacgACCATTGCCTCCTTGTCCACCAATTTCCTCCAATCCCCCTGACCTTCCTCCTCTCAAGCCTTGCACTCTGCCTGCCAATGCATCTCGCCCAGATAGGTTTGACTGGCTGATAGCCTTCACCCCAGATACAGAGTCGCCACCTCTTCAGATGCGAAAATTGTCCAACGATGGCATGCTGCAAAAAGTCCCATCTTCAACTTCAGGCTCAAAAGTCACAACCTTTAAAGAATTGCGCAACAGAAGCAAACAGAGCTCCCCGCCAGCTCCTGTTCAACCAGAACCTGATCCAACTGTTATCACCCCAGATCCTGATTTCCTGTACAACCTCAAATGGAGAAGAGAGAAGATTGATGGGGATGGCTGGGAATATACTTCCCAAGCACAAGCCTCATTTCTTCAGCCGCCACCCACTCCTGCCTCATTGTCCCTATTTAGAGAAATGTGTCGTTTGAATATACAAGAAGAATGCCCAGCAGAACCCAAAGTTTCCAAACAAATTGGCTGTTCAGTAAGTGAAGGCAGCCTTAGGACTATTTGTGATGAAAAAGATAAagctgttcacaccaagaagaTGGATGATGAAGATAAAGTGGAAGTTAGGGGAATGGCAGATGGAGCATGGACTTTGGAAACCAGGACATCAGTGTCCTCACCTCCCTTGTCCCTCTCCCTGACCTCACCTTATTACCTGCACTCTGATCCCCAGTTTTACCACACTGACACTAACAGGGATCGTGTCTTGAACCGTTCTGAGGGTTCTGTAACCATCTCAAACCCGTTTCCCCCTTTTGACTGCAGCACAGATGACTATACTGACTCCCTGTACTGTGCTGGCCCAGAAAACAATACGTTTTTGTTCTGTAAACAAGAAAATGATCTCAACGGTAACATGGATTCTCTGTACCACCGCTGTAATCATGTTGACAGCTTCCTAGACTCTTTATACATCTGTGGGCATGATCGTGACAGCACAAAAAACAGCTTCTGTCCACATAACAGTGGATTCGATTCAATCAGAAATGATGATTCCCTTTACAGGGATGCCAGATACACAAGAAACAGCCTGAAGCTGCTCACCGACCCTGAACCGCCGTCTGACATTAACACTCTCACCGAGGGCGACATAACGCCGTACAAAAACATTGACATGCAGACTTACATAACTATGCGAAACCTCAAAAATCGGAGCTTTGCGAGCAAAAGCAGTTACAAAGATGTCGACTTGCTGTTTGATTTAAACTCAGACAACATTGATGACTCGAAACCACCAATAAACCCGTTTTTTGACTACAACAGcaatgaaaacacaacacagaacAAACAGCAGCTTGTATCTTTTCCTGCTTACTACCTTTATCACCCCAAAAACTGCCCCTTGCATAAAGGCGCCCCCCCACGGCTTTCCCCCGTAGGAGCGATCTCTCCTCCCCACAGGTCCGGGCCTCCAGTTCCTGGCACAGATGTTGCCCGTCTCTGTTCACCCCTGTTCCCCCGCAGTCACACCCTTCCTGCCCTTGCCGCCCCTCTTTACTACCCTTATCTGTACACACCCCCTGTTCAAGCCCCTCTGCGGGAGCCATCGGTCCCCATACTTCACTCTCAGCAGAGTCCACCACCGCTCACTTTGACTGTTCGCAGCTTCTCATTTGCCGGCTCTGAGCAGAAGAACGCGGCTTGGATGGGAGAAGATGTGAGGCCCTCACTGAGTGCTGAAGGGCTGTCTGCTGCCTGCctgcaagaaaagaaaaCTCTTGTGAATTCCATCAGTGTGGCAGTGGAAGCCATTTTGGCTCAGTTCAGTTCGTCCAGGACTGTTGTACAGAAGtTTCACTCAGTAGATAAGACTCTTTCTGGAGATAGCAGTGTGAATCCCTGTCTGGGTCGTCTGGTACTGCAGTGCCTTTGCCCGGCCCTGCGCAGCCTGCTCTCTGATGGACTCAAGCCCCACCAGAGTGACCTCATTGCAGGCAGAAGGCCAAATTCACCCTGGGGTTTGGTTCAGGCCTCCACCAAACCAGgccCGAGCACACAGGCTTTGCACAACCTTCAGACTAAAGTAGCAGGGCTTCCCCAGCTTAAGCAGAGCAGACACAAGTTCAACGCGTTCCTGTTTGGCCTTCTCAATGTCAAGCTCCTGGATTACTGGCTTTCACATTTGCAGTCCTGCAGCGATGTGTTGGAGACATATTACCGCCCCACTTCCTTCATGCGTCTCTCAATAACGTCTTGCCAGCCTCTTTTCGAAGAGCTTCTCCTCCTACTgcagcctctctctcttctgacCTTTAACCTCGACCTGCTGTTTCAGCATCACCACCTTGACCCCTCCTCCCCGACGCTCACCCCAGCCAGTCACACATCGGAGATTTATAGCCCACCAAACGAAGACTTCGGCTTCCACTTGTCACCCAAGAGGCTTTTCCAAGGAAGTGGCCATCATCTTGGAAGCGTGTTAGAGCAAGACCATGGCATTTCGGGTTTAGACAGCAATCCTAATTCAGGTCTCACGAGTCACGTTCTCGATCTGTCAGCCTATCGGAATCCAATTTCGCTTTCATCAGGCGTCACCAAGGAGGAAGACAGCCCGCCGTTATCGTGGTTTAAAGGGAACGAGATCTCCATACCTCTTAATGCCGGAAGCCTTTCCCAGCAGGCAGGCCAGGCTCTTCAGCAAGGCTGGGGTGCAGTAATGCGTTTTGGGGAGCGTTTAGGACAGAACTTTGGTTTGGCCACTTCCACAGAGGATGATAAAGGTCCAAACTCACCTGTTGACTTCAAGACTGGCTTCTCGCTGAATCCAAAAAGTCCTTATGAAAACAGGCAGCAACCAAGAGACGACCTTTCCTTGAAGGATAGTGAAACTGCTGTTCCCTGGGGTCTGGGACGGCTCTTTGGAGCTTCTAAGAGCCCCAACAACCCACCAGCAAGCagGCGCCCATCTCAGTGGCTCTCCCCAGGCGTATCCGTCCTTTCCCGCATAGTGAATCTTAGCCAGGGTCCTCCGCCTGAGAAGAGAGAGCCCCAGAGAAGCAAAGATAAGGAGGAAGATGAGAAGGAAGAGATTAATGAAGCCAGAGATCAGCCAAAGCCCTTGAGGATGGTCCGAACGCTGTGTGACCACACAGGCGCCGGAACAGAGCTGAGCTTCAGGAAGGGGGAGGAGCTTGTCCTGTTGGGAGGCGTGGACCACGACTGGATTCGATGTCGTCAAGGTCACAAGGAAGGCCTTGTTCCCATTGGTTATGCTTCGCTTATCATGTGACTTATCTTTAAATTTGCCTGTATGTTTGTGCGAAAGAACATCAGGGGATAATGTACAAGGAAAAAGACCATATATAGATGTAGTTATTAGTAGCTGTGTtatgtgtttatctgtttatctCTGACCCTCGTTGCCTGGTTTGTGACGTCTGGAATATTTTCTGTGATATATAGGAAACtgtataaatcataaatatatatttagattttacaaagatagatagacagataaacaaGAAATAGAAATGGGTAATGAATAAGAATCAAGTTTAACGAAAATAAAACCATCATAGGGTATTTATTATTAGGTGTTGCCATAACAAACAGCTCGGCCGGAATCTTACTTAAAAAGCTCAGCGCAAAGATAAGTTTATtcgtaaaacagcatttcattataattttaagtCCAATATGCATATTTGACGTATTTTCATCCGAAACTGTGTGTAAAAccccttaaattttttttaccatatcaTCAGCCCAAAGACAAGCACGTCTTTGAGTTTTGGTTACTTTGGGGCTGCCTTAGTACATATATGACAGATTTACTCAAATTAACTCTGTCATTTATTATGcgattaatgttttattttcattctacTGTTCAGTAATTACTGGCTAATCggtctaaaaaaaataactgcttGATAATTGAAATGACATTGATAAGGATAAACAAAAttctttataatattaatacttcaTTGTCCTAATTTGTACACcaacaattaataaaagaaCTCTTGTTATTGCCTGAAAATGCCCTTATATGCTCCCTTTTATTATCTCCCTTGccaggaaaaaaacattctgtttgAAAACCGACATTATTATTCTCTTATGGTTATTATTGTAACTCTCAATGGTAACAGTCCGATGTACGTATTAGAGTGGTAGTGTGTAGATGATTCTTTTCTATTTCTTACAGTGTGATGGCTACTGTAGTAAGATCTGTATCACCATGAGCTTGATAGTGACTATGCATACTCTGTACTGTACTGTTTATGAGGCTTGTTGCTGGAGAAACCATATATGATTGATAGCATTCACGATTTTCTTTCGAATGGATATCCTGCATCCGTATAACGCTTTGAATCGGGGGTTTACATACTAAACCTGCATGAATGTGTACGAATGTGTGTAGCAAATGTCAGGTATTCATCAATACAACTTATTTGTGTGCACAAATGCTTTCGCTCAGACTATAAATGCTAAAAGGAACGGGGCAGGATTTTAGTGGCGGCAGCGGGGAAGGTGATTTGAGACGGAGCTTGCTTATTGCTGTTCATTAAATAGCCCTCTGTGTTTCCCACGTGTATGAATTTTTGTCACAACTCTGACTTGGCACTGCtaaccataaatatatattcggACAAAATGAAAGAATACAGTCTGCATGGAGCACAGTTTTGCCCATCACACCACATGACGATATGCCTTCTGGATTATTCCAACCAATAGCAAAAAAGCTATGGGCTACAGTAGCAGTAACCAATTCACAttgctgtgtatatatatatatataagtatgaATCTTACAACTGAAAATTAATGTATGTCATGGGACAGATACAGTTTTTAGGATATAGTTTAGGAGAAAATGAAGATTTAGTAATTGGCGTGAGCTTTAATGAccctgttttaaaagaaaatgaaaccaaaTGGTATGGTTTGAGAAGCAAGCAAGCAGCAGGggtttggttaaaaataaataaatgaataaaataaaatcacatttagtGTAATAGTCTTACCTCACAGGGCAAACTGCAATGATgcatgatttttctttctttttttttccttttttgtaatGAGTATtatcattgtttattattattgttttcagttCTTGTAGTTGTCATTTTTCTTATGACTGTGAATTAATATTTGTGACATTTGAATTTCATTAatatgttttgaagaaaaaaacattataaatatagtgTGCTTATTGTTTGTGGTTTATATACCATACAGTTGATCTGCTTTCTATCGGTTCCTCttgtctatctctctatctatctcctGTGTGTGTACCTTTGTGTGGTAATGAGTTGCGTAGCTCTGTGTGGTAATGCCCATCGCTGGTAGCACACCTAAAGCATTATTATGTACTGTACCAACTCTTGAGTTCTGTAATTCCCTGTGAATCAGCTCTATGCATGTTGGTGTTTGTAAATATACccaataaaatactaaaagaaa

Function

GO: NA

KEGG:

id description
K23283 RUSC1, NESCA; RUN and SH3 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 74729 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 448452 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 476239 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 488864 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 610738 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 71824 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 80783 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 97835 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 101108 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 173110 13289205 ~ 13292423 (-) True G112299
XM_043261648.1 mRNA downstream 33979 13061035 ~ 13066879 (-) False dap3
XM_043261646.1 mRNA downstream 34815 13061035 ~ 13066043 (-) False dap3
XM_043261647.1 mRNA downstream 34815 13061035 ~ 13066043 (-) True dap3
XM_043260518.1 mRNA downstream 39931 13055397 ~ 13060927 (-) True gba
XM_043260517.1 mRNA downstream 52455 13042826 ~ 13048403 (-) True polr3c
XM_043260525.1 mRNA upstream 382 13116477 ~ 13119873 (-) True fdps
XM_043260183.1 mRNA upstream 4771 13120866 ~ 13123887 (-) True LOC122359944
XM_043260184.1 mRNA upstream 8253 13124348 ~ 13126202 (-) True LOC122359945
XM_043262032.1 mRNA upstream 20552 13136647 ~ 13143911 (-) False si:ch211-149k23.9
XM_043262031.1 mRNA upstream 20552 13136647 ~ 13143911 (-) True si:ch211-149k23.9
TU164609 other downstream 1689081 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1814426 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2217647 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2234430 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2352558 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 537965 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1118459 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1793230 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2352385 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2352385 15468480 ~ 15496375 (-) False rps19

Expression Profile