RNA id: XM_043260525.1


Basic Information

Item Value
RNA id XM_043260525.1
length 1605
RNA type mRNA
GC content 0.45
exon number 10
gene id fdps
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13116477 ~ 13119873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagaaacaaacgtacaaaaaaactacaatatgTGGTACGCCTTCGAATTTTTGGGCCGTCTTGACTTTTCATGTTGCAGGTGaaataaaagcacacagaaaTGTGTGTGACAGTAGTCTAAGCAAGGACAGCTTCGTGATGGGTGACAGCAGGTGCAGTAACGGTGTCAAGATGTTGTCAGATGCTCAGCTCTTTGATTCAGAGTTTGAAAAGTTGGTGTCTGAACTTACAGAGCAGGACTTCACTGATCCAGTTCTCATTGATGCCCTCAACCGACTCAGAGAGGTGCTTCGGTACAATGCACCCGGAGGCAAGAGAAACAGAGGCTTGTCAGTGATTGGATCACTACGGGAGCTGGTCTCTCCCTCTGAACTGCCACCCGATGAAGTTCACAGAGCCCTTTTGGTCGGATGGTGCATTGAACTGCTTCAGGCGTTTTTCTTGGTGGCCGATGACATTATGGATGCATCCCTAACAAGAAGGGGTCAACCCTGTTGGTATAAGaaggaAGGTATTGGTCTGGATGCCATCAACGATGCTTTTCTCCTGGAGGGGGCAATCTACCGCCTTCTTCGCAGACATTGCAGAGGACAGCGCTACTATGTCCATCTGCTTGAGCTTTTTACTGAGACCTCATTCCAGACAGAGCTGGGTCAAGCTCTAGATCTGATGACGGCACCTCCACACAAAATTGACCTTGACCGCTTCACCATGGAGAGGTACAAAGCCATCGTGAAATACAAGACTGCATTCTACTCCTTTTATCTCCCCGTGGCCGCGGCCATGTACATGGCAGGGATTGAAAACGAGACCGAACACAACAATGCTAAAACAATTTTACTTGAGATGGGAGAGTTCTTTCAGATACAGGATGACTACCTGGATTGCTATGGTGACCCTGCAGTGACGGGAAAGATTGGCACGGATATCCAGGACAACAAATGCAGCTGGCTGGTGGTGACCGCGCTGGGCATCATGACACCTGAACAGAGGGCAGAACTAGAGGCGTGTTACGGACGTAGTGATGCTGAAAGTGTCGAACGGGTCAAGGCTTTGTACGATACTCTGGAAATGCCTATCCGATACCTTCAGCACGAGGAGGACAGCTATCGCCGGCTTCAAAAACTCATCCAGCTGCATGCCAAGAATCTGCCTCATGCCGTGTTTCTTAATTTTGCCAAGAAAATATATAAGAGAAACAAATAAGGTGTGGTTCAGAGAAACCAAAGGACTTCACAAATGGAGTTCAGCATTTTTAGACATGCAGGGTCAAATAAACATTGGCAGTGAGGGATTTTAGATGTTGAGTAAATAAGGAAACGGTAGGTTTTATCTGCACTTTAAATATGCTGTCAAGAGTTTAGTTATTTGTCATAATTATCTGTTTTCCCCAATTTTAGTCTTGCAGAAGAAATACAGTAGGCTGATTCAGAGGTCTACCACAAATAGCACACATAACACCTGCCAGTGTTTCTCTTGgggtatatatattttcatcagatttttgGACTGTTTTCTCAAGGTCTGTGGAtgtgaaaaaaagatgcatagattgaaataaataaattatatacaaaaaataaatattacgtGAATGAGAACGGA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 90348 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 464071 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 491858 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 504483 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 626357 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 68046 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 77005 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 94057 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 97330 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 169332 13289205 ~ 13292423 (-) True G112299
XM_043260522.1 mRNA downstream 382 13100858 ~ 13116095 (-) False rusc1
XM_043260521.1 mRNA downstream 382 13100858 ~ 13116095 (-) False rusc1
XM_043260520.1 mRNA downstream 382 13100858 ~ 13116095 (-) True rusc1
XM_043261648.1 mRNA downstream 49598 13061035 ~ 13066879 (-) False dap3
XM_043261646.1 mRNA downstream 50434 13061035 ~ 13066043 (-) False dap3
XM_043260183.1 mRNA upstream 993 13120866 ~ 13123887 (-) True LOC122359944
XM_043260184.1 mRNA upstream 4475 13124348 ~ 13126202 (-) True LOC122359945
XM_043262032.1 mRNA upstream 16774 13136647 ~ 13143911 (-) False si:ch211-149k23.9
XM_043262031.1 mRNA upstream 16774 13136647 ~ 13143911 (-) True si:ch211-149k23.9
XM_043262033.1 mRNA upstream 24176 13144049 ~ 13146414 (-) True atg12
TU164609 other downstream 1704700 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1830045 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2233266 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2250049 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2368177 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 534187 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1114681 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1789452 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2348607 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2348607 15468480 ~ 15496375 (-) False rps19

Expression Profile