RNA id: XM_043260530.1


Basic Information

Item Value
RNA id XM_043260530.1
length 7009
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC122360159
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24372103 ~ 24430886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcaaacacaaacattcatATCCGCTGTGTCGTTTGGTGGCTTTCATTCATGCTTTAGCAGTGTGAGGTGGCAGAACTCAGGTAATGGACGGCACTACCTCCTGTCTATCCGACTGTACGCTGTGTTCTGTTTGGAAAATGACCGCTAACTGGAATTACTAGACATAAGGGGATCAGCTTTCAGAACGGGGTGGTGAGGTGTGCCTCTGACTCCTGCGGCTTGACATTCAGGAGGGGCCTTCTGGCAGCGTGGGCCAGCGGCACCGCCTCCTCCGGTTTGTCTTTGATGAACATGTTGAGGTCTCAGCGAGGGAACACGTGGGGTCATGAGATGCTGCCACTGGCGTGCGGAGAGCCAGTGAAGGTCTAAATGTGACAACCTGAAGATAGGAGACTAGTAGTCTTAAAGAATTATTCAATGTCAGCAGAGAAAGTGCCTCAGAAGCATCTCGAGACATTCTTTGTCAAGCTCCATTGCTAGGCATTAGCCCAAAAGACACACAAAGATGAATTTCACCAAGGCTCTTTGTGAACAGGAGAGGAGACATTTAACACACAACCAGCACTCACATATATGGCGGCTACATACTGACACTGTTTAATTATGCCTCTCTCAGTTAAGACATCATCCGGTATCTTATATTAATTATGGCATAATACAATTAGCCCCCTAAAGCGAGCGTAAAGACTTTTTCCTATCGGAAGAGTATTGATGCAATGATGTTTATTGGATTGGTGCTCAAAGCAGCACTCCCATTGCGTTCTTGAGGCCTCCTCCCCACATCCTATGGAGGCGGAGGAAAAGCAGTCAGCTGATGGGGAGCGGTCTGGTGGGCAACAGCAGCCATCAGAATCTTTGTTAGCAGCGCAGCTGCCTCAGTTACATCAACAAGCTACCTCGCAATCTGTCCATGAATCACATGGCCGTCTTCAACACAGGCAGCCAAAACGCTTTGAAATGCTCCAAAGGCAGAAGCAGCAGCAACAGTCACAGGCGGGTGGGTCATCTTGGCAGCTTTCAGAAGTACCTGGTCCTTCAAGAGGCAGCTGTTCTGCCCTGGGAGATCCATCTCCCCAAATCCCTAATGTTAAGCAAACTCAGTCTCTGCCCAGTGTGGAATTACAGGAAGGCACCCCATGTAGACGAGAACGTAAACCCCAAAAACCAGGGAAATATGTGTGCACATACTGCGGCCGTCCTTGTGCTAAGCCTAGCGTCCTCCAAAAACACATCCGATCTCACACTGGAGAGAGACCTTATCCATGTGTCCCATGTGGCTTCTCATTCAAGACCAAAAGCAACCTGTACAAACACCGCAAATCCCATGCTCATCGAATAAAAGCAGGCATGGCCTCAAGTCGCGAAGAGACCAGTTTCATCGGGCCCGAAGGTGGAGCCTTGGCAGATGAGCAAGAGGAGGGTACGGAAGGAGAGAGTTCAGGTTCTGATGATGAGACGGGGCAACACCAACCATCTACCTCACAGGGCAGGCCAACTCTGAAAAAAAGTAGTAAAGTGGAATTGTCATTTATAGAGGAGGGTCCCCAAACAGAGGATTCACAGGCAGTCAAGCAAAGGTTAGCAATGAGGCTAAGCGAGAGGAAGCGAGCTCCCAGAGCATCTTCAGATGAAACCAGATCCTCACTGGGTCCCGGCAGCAAGGGGAGCACAGAATCTGGCTATTTTTCCAGTTCTGGGAGTGCTGAGCTCTCTCAAGTGAGCCCACCAAATGCCAGTGCTAAAACGTATGCTGAGATAATTCTAGGAAAGTATGGACGCCTAGGACAACAGCAAAGAATTTCACATCAACAACTGCAATTATCATCATCTTCAGGTCAACAGGAAAAATCTGTCCCTTTCACTGTTCCAAAGACACAAGTCATTGAGCATATAACTAAGCTAATTACTATAAATGAAGCCGTGGTGGATACAAGTGAAATTGATAGTGTCAAACCAAGACGCTCATCACTCTCTAGAAGAAGTAGCATTGAGTCTGTAAAATTCTCTTCACCCAAAGATTCCTGTGTTTTTGAACCAAAAGCAGATGTCCCAGGCTCCTGTGGCTCAGCTGTTCAACTTATTCCTGGTAGTTTTGGAAGTGAATTACCTGGCTCATACTTAGctgaaacagaaacactgaCTGGTCAGAGCTCCAGTGCTCTTCTTTATAGGAGTCAATCAGTGCCATCTTCTCGTAATACTTCAGATACAGCTTCACACGGTTTTCGTCTAAGTCATTCTTTTGATGATCAGCAGGCCATTGCAGCTGAAATGAGAATAGGGCCACATCAACGAATGTTACGACGCCAACCTGCTATTGAGGTGCCAGTTGGAGTGGACCTCATTAATGAGGATGCAGGTCCTTCTTCCAGTTTGAAAGAAATAGAATCTGGAAAGAAGCAAGAAAGGGAATTGCACCTTTATGAGTGTGACATTTGTGGTATTCGCTTGAATAAGCAGGACTCTTACACTGCACACAGACTAGCATGTATGAGTAAATCTCCACATGGTCTGCAAAGTGAGGAAGGCTGTTCTTTTATTGAGAATCAGCCACAAATTATGAGCTACAAGTTCAAAGCAATGGCCATGGCAGTgcgcaaaagaaaaaaaaaagaagaaagtcttGAGGAAGACCCTCCCAGTCCAGGTCCAACAGCAGTGTGCTTCAGCACCCAGCCTCCATCAATGCTAGGTAGTATTGATATTCAGGGCATACCCCATGGCCTTTCACAAAGTGAGGTAGAAAAAAGGAGTTCCTGGAAGGAAATTTCTGTTATCCAGCATACCAGATCCTTTGAAAAACAGGAAAGCATCTCTATGGCAAATCAGGGAGCAGAGCCAGAACACGAGCCATCACAGGAGCCAAAATCAATCTCCACATCCCGGTTAATCCGTCAACCCAACATTCAAGTGCCAGAAATTCTGGTTACAGAGGAGCCAGATACCGAGATGGTCTCCCATCCAGTGAATGCTTACACATCTAAAGAGTCAGAGAAGGTTGAGGAATTCCAGTGGCCTCAGCGTAGCCAAAGTCTGGCTCAGCTCCCTGCAGAGAAGCTACCGCCAAAGAAGAAGCGTCTCCGTTTGGCTGAGGCAGCCCAATCATCAGGAGAATCTAGCTTTGAGTCAGTATCTCTGCCACACAGCCCAAGTCAAGAGAGCAATGTTTCCCATGCCTCTAGTCGATCTGCATCCTTTGAGGAATCCGGAAGGCCAGACACTGAGATGCAAAGTGGTACCTGGAGCTCCCAAGGCTCTCACATGTTGACAGTTCCATCAAGTCTCCATCAGCACCATCATTCTCACAGAGAGATGCGCCGCTCAACCTCTGAACAGGCAACTGCAAGTCCTCCACACCCTGCACATGTAGAGGAAACAAGAAGCAAGTCATTTGACTATGGCTCCCTCTCTCAAGAGCGCACTTCTGCTACTTGGAAGGAGAGAAGGAAATGTCTCTTGGTGAAGCACGGAACCCTTGGTGAACCTGATCAGGAGGAGCCATGTACTAAACCTGGTATCTCAGCTGTTTGCCAGTCCTACCTAGGTCATCCTCCATTCACATTCACGGAGCATAGAATGGGAGGCAGGACCTCTAGGATTAGCTCAGAGCATATAGGGAAGACCTTGCAGCTCTTCCAATCCCCTCTTTCACTCCCACCAGCAGTTTTCCCGCTACACCAAGCAAACCCTGATTTTTGTTCCCCAAGTCAGCTCTCTAGATACCTTCCAGTCACAACACCAGTCGTGTCTACCCAGATGTTTCAGCAAGCTTTCCTTCACAGTGAGCCGCCTCCACCACACCCAAGACCCATAGAATATGTAGAGCACCTGGGACTACCCCTTCAGCCACTCACCACTTTATTTCCGCTACAATCAAGTGATGTTGCTCAGGCTGTTTGCTTTCCCATGCCAGGTGGTCTGACTATACAGGTCCCCTCAGGACCTCTTTACAGTGAGTCTAGATCATCACCTTCCTCCTTGCATACTCCCAGTCATTCACAACAGCAGCTAGTCGCCCGCCACAACGCCCATCCCGTGATTGCCCCTTGTCTTCAACAGCTTATGCCAGTGGTGTCTCTTGTAGTGCCTGTTCGCTCACAGACTCACATACCTACCTATGCTAGTGCCATGTATACAACCATCTCACAAATTTTAGCCACAACACAGCATCCAGTCTGCTGCACAGCTATGGTAATCATGGGTAAGCTGGAGGAAGACAAGCTTCAGAGATCTTACCTTAGATTGCCCTCACCTAGCCCCAAGAGCTATATTCCCTTGCCTCTCCCACTCGAGCATGGAGCAGGTGCTTCATCTGATGACAGCTGTGGGCAGCTAGGTGCTGGAGGAAGTAAGCGAATGCTGTCACCTGCCGGTAGTCTAGAGCTCAGTTTAGAGGCACAACGGCACCAAAAACGGGtgaaagaagaggaggagaaagaagagGGCGACAAGGAAGATGACAATAACAAATGTGACAATAAATCTCAGGAGGTGAGTCAGGGAAAAATTAAGCAGAGGCTAACAGTGGAGACATTGGGGAGGGCCAAAGAGTCAAGAGAAGTACCAGAAACTGAAAAGTTAATGAAGCAGGACTTAACCCAACACAAATCTGAGACCTTAAAGGAGGAGGGAAGGATAGAGGCAGGACATCGATATGCTCCAAGGGTAACAAGTCCAGAGAGAACTGTGGACCCTTCATACCCCAGTTTGCATACCACTACATCTGTCAGCTGGTGCTACTTGAACTACACAAAGCCCAACCCATCTACACATAGAGATTCAACTTCCGTCTATTCCTCGTGGAGTGTTAGCATGCATAACCCCAATATACCTGGCTTATCCACCAAAATATTACTGTCCCTGCTGCGTTCTAAACAGAAACATAGTGCTGAGACATATACTATGGCTACAGCTCCTCCACCAACCACTGACAAGCTGGTCCCTACTGACAACAAGACGGACAGTGCGTCAGAGGTACGTGCTTCTCCGCCCATCACACCCGTCGAAgtaaaagaggaaccaccaaaTGAACAAGgagatgaagagaaaaaaagttctGATGACGTTCCCGCTACTTCGACGCAAAGTGAGACCACACGTGTTTGCATTTTTGAGGGCGGGTATAAGTCAAATGAGGACTATGTATATGTCCGCGGTCGGGGGAGAGGAAAATATGTGTGTGGTGAGTGTGGGATTCGCTGCAAGAAGCCCAGCATGTTAAAAAAGCACATTCGCACTCATACAGACGTCCGTCCTTATGTCTGTAAGCACTGCAACTTCGCCTTTAAAACCAAAGGGAACCTTACCAAACACATGAAGTCTAAGGCCCACGGCAAGAAATGCCTGGAGATGGGTGTGTCGGAGTCGTCTGTGGATGAGTTGGAGTCTGAGGAAGCAGGGGGCAGTGACGAGCGAGTGTGTGAGTCAGAAGAACAGGAGGGGCACCAGTTCTCTGATGTTGATGATTCTGAAGCagaagatgaagaggatgaggaagaggactTCTCTTCCCACGATGAACCATCTTCAGCCTGTTCCACTGATACCCGTCAATCCACGGGTGACCTCTCTGAAAGTGGCCATGGCTCACAGACTGAGCCCTCTGACCTTACAGCCAAAGAGGGATACTCCTCACCCCACAGACCGTGGCCTGGCATACGAGCCGCATCTCCAGGCAGCAAGAGGGCGTCTTTCTCCCGCAAGGGCTGGGAGGTTTCCCCGAGGACCTTCTCTCCTAGCAGTGAAGGCTCTCCCCTTAGAAGCTTGTCTCCAAGGCTTGAATTGTCCTCGCCTAGCCGTCATCTATCTCCTTCCCCAGAGAGAGGCCCATCACCCATCAGAGCCCTCTCCTCTCTCAGGCCTCTCTCACCTCTGAGGCCTGTATCCCCAGCACGGTACAGGAGCGCAAGAGCTGTCTCCTCTAATACGCCCCTAAAACCCCAACATCGGCCGCACAGCTCACCCGCAGGGCTCCACTGGGAACCTAGCACACCAGCTACTGAGGGTCAAAAGGACAAGCCTGGTACTCAACCAACTTTACAGCAGCGTATGCCCCCAGATCCCTGCCTGCTTTCCCCATCCCTACGGTTCTCTCCAAGCGACTCTTTCCCTCCAAGTCCTGTGACGCCACGGACAGTGGACCGCATGTTTAGCCACCTGCCTTTACACTCCCAAGATCAAGCCCGCATGCCCTATCACATGATTCCCATTGGGGGCATCCAAATGGTGCAGCTCAGACCCCGATCACGCCCCAAACTGGAACGACAGTCATCCTCCACCCCTTCGCCCACATCTCCCAAAGAGGACTCCCCTTTTTCCCTCACCAGGAGGGATTATCCATGGATCTCGCTTCCGCAAACCAGTCCGCAAAGAACTCTGGCGGACAACAGGACAAAAAGCCAAGATGAGGGAGCCAGCCGGTCTGACCTGTCTTGTCCCAGTACAAGCTCGACGTTACCCAAACTCCCCCCTTCACAGCAAGGTGGAGGGGAGAGGTGGACTGCAAAGGTCAGAAAGCAATATGGCGACTCGAGCTCCGCCACAAAGACTCGCACCTTCGGTCCCGAAACATCCAGGATAGCGGCGGCAGACAGCGATGAAGGAGCAGAGAGGATCTCGCAGGGGGAAGCAGCGAGTTCCTCACGCGAAACCAGACAGCTGCGCGAGACAGAAAAGCCTGTAGCGGCGCCACTCAGGGGACGTGGCTCTTCTTCAGAAGGATGTTCAGGATCTGGCAGTGCTCCTCAGAGCCAGGAAGatcTGGTTTCAAGATTATGCTGCATAACCAGGAAATTAGAAGTTAGAACTACTTTAAAGGTAAAGCAGACGAGTCAACCGGTCTCATTGATGGAGGTAGGTTGAGAATGAAACGTGTAGAGCAAAACTAAACGTTCAAGGACAGGTCAAAAGTATTAGGAGTCTATAATTAAAGGTAAACAAAGGTGTTTATGGGAGAATGGGACAGAGACGCCCTAACAGCGTTTAAATGCTAATACTACGCCTCCTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171236 lncRNA downstream 3738 24364645 ~ 24368365 (-) False LOC122359997
TU171175 lncRNA downstream 183509 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 294236 24077631 ~ 24077867 (-) True G115939
TU171150 lncRNA downstream 314841 24049753 ~ 24057262 (-) False LOC122359981
XR_006252750.1 lncRNA downstream 314859 24048538 ~ 24057244 (-) False LOC122359981
TU171248 lncRNA upstream 19821 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA upstream 46922 24441327 ~ 24473365 (-) False serinc2l
TU171515 lncRNA upstream 427096 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 439131 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 440694 24835099 ~ 24835364 (-) True G116164
XM_043260265.1 mRNA downstream 2537 24364640 ~ 24369566 (-) True LOC122359997
XM_043261588.1 mRNA downstream 32315 24317482 ~ 24339788 (-) True phactr4b
XM_043260102.1 mRNA downstream 55971 24311489 ~ 24316132 (-) True rcc1
XM_043261532.1 mRNA downstream 173449 24196697 ~ 24198654 (-) True dnali1
XM_043260043.1 mRNA downstream 217681 24134883 ~ 24154422 (-) True rspo1
XM_043261016.1 mRNA upstream 47631 24442036 ~ 24451084 (-) True serinc2l
XM_043260835.1 mRNA upstream 232189 24626594 ~ 24808670 (-) False ptprub
XM_043260834.1 mRNA upstream 232189 24626594 ~ 24808670 (-) False ptprub
XM_043260832.1 mRNA upstream 232189 24626594 ~ 24808670 (-) False ptprub
XM_043260831.1 mRNA upstream 232189 24626594 ~ 24808670 (-) False ptprub
TU171232 other downstream 44130 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 696805 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 762262 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 847721 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1438136 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 1273414 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1985267 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2412715 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2415912 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2415912 26810317 ~ 26812909 (-) False G116632

Expression Profile