RNA id: XM_043260536.1


Basic Information

Item Value
RNA id XM_043260536.1
length 2862
RNA type mRNA
GC content 0.46
exon number 11
gene id u2af2a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13487351 ~ 13494251 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGACCTTAGTGGGCGCACTCTCACGGCCTTGGCGTTTCATAGAGATTTTGTGGAAAATAGAGGCTGTGCTTAACTTATTTCGGTAATTTTGATGAATACATGAGCTCTTCCACGAGCAGAGCATTCGTTTATTTCTGTACATCATCCGGTGCATGTGTGTTTACTCTCGGTCTCTTTGAAAGCACGTTTTCCTCATGCTAGTCTTTGTATGTACTGAGCGCTTCTGGAAGACATCAGCCCGACTCCAGCTGCTTTCATTAAACTGCGCTTTGCTTTCTCAGGGTCGCGTTTTTGCCTTACAAGAACTGTAGTTTCGTAATTGCTTCACGCTTGGtgtgaagtttattttttttgttttgttgtcggTATAATAGCAGCCATTGAATTGCTAGCTGCTAGCTAGCCCGCTTCACTCTCAGTCGGCGTGTTGGAGCTGCTGGAAAATGTCAGATTTTGACGAGTTTGAGAGACAGCTGACCGAAAACAAGCAAGCGGACAGAGACAAGGAGAACAAGCACCACCGGCGCAGTGGCTCGAGAAGTCGCAGCAGAGACCGGGACAGGAAAAGGAGGAGCCGGGACCGAGACAGAGAAAGGCGAGCAGGCAGCCGGGATCGTCATGGAGACAGCAAGGACCGCAGACACAGACGCAgTCGCTCTCCACACCGTGAGAAGAAAAagattaaagtgaaaaaatacTGGGATGTTCCTCCCCCTGGATTTGAACACATCACACCCATGCAGTATAAAGCCATGCAGGCTGCTGGTCAGATCCCAGCCACTGCTCTGCTTCCCACAATGACCCCCGAGGGTCTGGCTGTGACCCCAACACCTGTTCCTGTTGTGGGCAGTCAGATGACTCGTCAGGCCCGGCGGCTTTATGTCGGCAACATCCCGTTTGGCATCACAGAAgaGTCTATGATGGACTTCTTCAATGCTCAGATGCGTTTAGGTGGCCTGACTCAGGCCCCAGGCAACCCAGTTCTTGCTGTTCAGATCAATCAGGACAAGAATTTTGCCTTTTTGGAGTTTCGTTCAGTAGACGAAACGACACAGGCCATGGCATTTGATGGCATAATTTTCCAGGGACAGAGTTTAAAGATTCGTCGACCACACGATTACCAGCCTCTGCCAGGCATGAGTGAGAATCCCAGTGTCTATGTCCCAGGCGTCGTCTCCACGGTGGTGCCTGATTCGGCACACAAACTCTTCATTGGCGGTCTGCCAAATTACCTCAACGACGACCAGGTCAAGGAATTGCTGACCTCATTTGGCCCTCTAAAGGCCTTTAATTTGGTCAAAGACAGCGCAACAGGCCTCTCTAAGGGCTATGCCTTCTGTGAATATGTTGACGTCAATATCAGTGACCAGGCCATCGCGGGACTAAACGGGATGCAGCTGGGTGACAAGAAACTCCTGGTCCAGAGAGCAAGCGTCGGCTCCAAGAACACCACACTGACGGGTATAAACCAGACACCGGTTACCCTTCAAGTTCCAGGTCTCGTGAACAGCTCGGTGACTCAGATGGGAGGCATTCCCACAGAAGTATTGTGTCTGATGAACATGGTGGCTCCAGAGGAGCTGCTGGATGATGAAGAGTACGAGGAGATCGTGGAAGACGTCAGAGACGAGTGCTCCAAATACGGCCAGGTCAAGAGCATCGAGATCCCACGTCCCGTCGATGGCGTGGAAGTTCCTGGCACTGGAAAGATCTTTGTGGAGTTCATGTCAGTGTTTGACTCCCAGAAAGCAATGCAAGGCTTAACAGGAAGGAAATTCGCCAACAGAGTGGTGGTGACAAAATACTGCGACCCTGATGCGTACCATCGCCGCGACTTCTGGTAGAGACGGGACAGAATCCAGAGCGAGAGAGACTCAGAGAAACGCAGATGGTGTGATTTCAATCTCTCGGAAGCCCCTTGTTTTGTAGATTTATGAGATCTGAGAGAGTGTGAGCTTTTTAAAATCTGGCAGACTAAAAGCATGACTTGTGATTGGTCAGAATGTAGCGAACCAatcatttgtcatgtttttttttgttttgtttttgtttgtttttttgatgatgatggtgatgacgACAACAACATTGAAGTATGTGCAAAGCTTTAAGATGGGAAAATGGACCGTACCATGTCAGTACATGCAGTCAAGGATTCTGTTAGACATGCCACTAAACTTCCAGCTTAATTTTGGCTCCTAgtgattttcactttttgtcGATGTTAGATTCCTACTCTATCATCTGTACAGCTCACACACTGGTCAGataggagagagaggaggatgTAAGGAGCAAGTGAGGAAAGAGAAATTGACAACTACGAAAATGAATGATACACTCAAACAAAAAGGGGAGAGGGGGTATTTCAGGCTTTGTTATGTGGATATGGTTTTTATTTAGGCTGTGAGGTTACCTGTTAAAAAGCCAGAGGAGTTTCCAGGTCATCTTTCGACATCATACATGTATGAGGTAAAACCGCTGCAGGCTAATCGCTATCTTGTAGAAGGTGAATATTACCAATTACATCTATACTGTCCTCTGTTttccccctcctcctctctttttCCTGCTATCTCTCCCTCCTTTTATAATAGTTGTACTGTTTTTCGTGAACCCTATTTTCCTGGCCCGATCTAACCAAATTTATACACGGTGAAAAAAGATACTtgtctctgcttttttttccgttttgtttttttagttttttctgttttttttcctttttatacaTTCTGTATCTAACTGTccactgctgtttttttaaaactgtaataagcTGAGTTGATTTAATACGATGCGTTTATGTATGAAGACCAGAGAAACTTCTGGTGAAATAAACTCAATGCGTTTGAACTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0046660 female sex differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165793 lncRNA downstream 15665 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA downstream 25626 13455557 ~ 13461725 (-) True G112339
TU165802 lncRNA downstream 40173 13440670 ~ 13447178 (-) True G112336
TU165763 lncRNA downstream 53056 13431144 ~ 13434295 (-) True G112315
TU165746 lncRNA downstream 194928 13289205 ~ 13292423 (-) True G112299
TU165828 lncRNA upstream 40490 13534721 ~ 13543311 (-) True G112350
TU165843 lncRNA upstream 112400 13606631 ~ 13609334 (-) True G112361
TU165864 lncRNA upstream 124456 13618687 ~ 13619336 (-) True G112377
TU165875 lncRNA upstream 154396 13648627 ~ 13736231 (-) True G112385
TU165880 lncRNA upstream 164774 13659005 ~ 13659470 (-) True G112390
XM_043260540.1 mRNA downstream 1641 13473475 ~ 13485710 (-) True cacng6b
XM_043261089.1 mRNA downstream 167588 13306028 ~ 13319763 (-) True pitpnc1b
XM_043260047.1 mRNA downstream 282754 13201382 ~ 13204597 (-) True josd2
XM_043261894.1 mRNA downstream 316367 13162930 ~ 13170984 (-) True flcn
XM_043261898.1 mRNA downstream 324567 13158802 ~ 13162784 (-) True zgc:174888
XM_043261305.1 mRNA upstream 12400 13506631 ~ 13516502 (-) False epn1a
XM_043261306.1 mRNA upstream 12400 13506631 ~ 13516501 (-) False epn1a
XM_043261304.1 mRNA upstream 12400 13506631 ~ 13516501 (-) True epn1a
XM_043261975.1 mRNA upstream 52049 13546280 ~ 13548312 (-) True aicda
XM_043261974.1 mRNA upstream 58309 13552540 ~ 13555963 (-) True nat14
TU164609 other downstream 2075574 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2200919 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2604140 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2620923 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2739051 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 159829 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 740323 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1415094 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1974249 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1974249 15468480 ~ 15496375 (-) False rps19

Expression Profile