RNA id: XM_043260540.1


Basic Information

Item Value
RNA id XM_043260540.1
length 2659
RNA type mRNA
GC content 0.41
exon number 5
gene id cacng6b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13473475 ~ 13485710 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tccctccttctcctcctctctcagcTGAGTTTCATGTATCTAGTCATCagatctgcacacacacagaacaggttCATCAAAAAGAGGAACGCTTCGTTTCGTGGCTCTTTAAGGCCTCAATCCAGCGTCTCTCATCGAGTCGTTCTTTTCATCTACCCATTATTCCTGTCTAGTTTCTTATCAAACCGTCTCTCGTTTGTAGACGTCAGTTAATTCCCACTCGGCGCTCTTCAGAAATGACCCCCTGTCACTTGAATTTCTCGCACGCTGGATTCCTTTTAAATCACAGAACATTGTAATTCGCTATCATTTCCTGTTCCTTTTTGAGCTTTCTATTAATACACTTCTCTGCGTTCTCATTATCTGTCCGTCCGCCCCTCCAAATTCCAGACTAATCTCTCTAGTCTCTAGTCTTCAGTTATTTGTTTGTCCCCTTTCCTGACCTCGCCTCTTGGAGTTTTTCCCCTCATCTCCCAAGTATTGTGGCTGTTATGTGGTCCAACTTCTTTTTGCAGCAGGATGACGACGGGAGAGTGGGTACGGGGGCTTTGGGTGGAGTTGGTAAGAGCGGGCGCTCAGGTAAACGGTCGAGGCCCCCTCGAATGAGTGACAGCCAGGAAGGCAAGATCAAGCTGGCGTTTTTCATCGCTCTCATAGGCGTGACTCTGACCGTGCTTGGCATGGGCACGGAGTTCTGGGTGGAGCTATCCCAGCCAAAACACTTCAGGAACAACCAGACGTGTGAGATGGCACATTACGGCCTTTGGAAATCATGCGTTCGCACGCTATGGGTGACAGATATTgacccagagagagagagctgtggACCTGCAGAACTGCCTGGAGAATCAAACTGCACATTCTTTAAACTCTACACTTCTGGAGAGAATGCTGTCATATTTAAGAAAACGACAGAAAAAAGTTTGCATATAGCAGGTGCAATGTTGGCTTTGTTGAGTTTGTTTCTGATGATCATGGGCTCTGTGTGTATCACTATGTCTCTCAGTAAAAGCGTGCCCTTCTTCCTCAAGCCTGCTACCATCTGCTTCGTCTTCTCAGGTATCCTGGTCCTTCTGTCCATCATAGTTTTCCACCAGTCTGTGCTGGCGTTATTGGCAAGCGATCACAGTATCCCTCTCCATCACGAGTTGTCCTGGTCAGTGGCGTGTCTTGGCTCGGCTGGGGCCATTCTCATTTTTGGAGGGCTTATGTTCCTGTTGCTTTCTCTCCCCTACAACCCCCTGGAGAAATGTTTTCGTCAGCAGAGCAGTAGTGATGCCTAGCTGTCAGAGGACTGCCAGCGAGTTAAGTAGCACAAGATCTTTTAtactgttttgctgcttaatgttAGGAAGGACTCTCAAAAGCTAATGGTTTGCAATAACTAGCATTAGTCTGCTCATCGATAAAATGATAGACCTTAATGCTCATACACCGACTCTGAAATTTGTACTGATATTTCTACGATGGTTATGTACATAAAATCAGTGACCAACAGATCTGTTTACTGTCTTGAAAGGCTTCATTTACACAATATGCTGTTCAGTTATGcactgtctctttttttgcatttgtatagGAAACCTTATTGATTACAGACATATGCTGATTTATCAGGTATCTGTGGGTTGAaagtgttgatttttttaacacacCATCCTATCATTGCTGAAAGCCTGTTCAGACCAAGAAAGATAACTATATTAGTGTCACATaacattctgtttattataagaGCACACTGCAGTTTTTTGCCTAAATGCTGGAGGTCTTTAAATTTGAATGGGTTCTAATTGGCAGTCAGTGCTTTTATCATTCatcagatggaaaaaaaaatattatgaaaataattccATCAATGCTGTTTCTTTGTGGCATTTTCATTATAGCTACGGTGTGGACTTTTCTCATATAATTAGAATGACTATTAAAACTTGACAGGTGTAGTTGCCATTATAGTTACCGTCCTTGATGCGAACAGGCAGCTTCAATGCTGTTGGCTTAAACTTGGCATGTGATCTTCATTGACCAGAATTATGTTGTCAACCAGCTTAACTAGTCTTGGAACCAGCAAACTAGCATCACAACGTAATGGTGGTGACCAGCTACAGTGATCCCAAAAAGAAATCTatggatacatttaaaaaagtgtaaaaaagtatttttatatacttttttgaaTATAATTGGAATGTCTTTCTAccattttctttcaaatcaaTGCTTCTCAGTTTGTTGATTAACTGTAAAGTGAAATATTTGAGATCACTATGTTTTTTCTGCTTGGTTTTCAGTGAATAGCCATCAACCGACTAGATATCATGGATTTCGGTGCATAGATTTAATGGGatggtttattatttatataaatgtatattgatGCTTAATACTGCGCATACTGTACGAAAAATTATGTACGAAATTGATTGATGTGGATGATATTGGACCCACCGTTGAGCCACATTTCTATGTAAATactgtgtgtttatattgtgcTCCAGCTTTTCTTTATCCTTATCCTGAAGACCCTGTCCTTCACTgaactttcttcttctttctttcacgTCTGCTCTTCACTTGGTTGTTTGTGTCACTCTCTATTCGTCACGCTCTTTCTCGTTCGCCGGTTTTGCTTGAGGATTAAATCTCTTTCACCTAA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165793 lncRNA downstream 1789 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA downstream 11750 13455557 ~ 13461725 (-) True G112339
TU165802 lncRNA downstream 26297 13440670 ~ 13447178 (-) True G112336
TU165763 lncRNA downstream 39180 13431144 ~ 13434295 (-) True G112315
TU165746 lncRNA downstream 181052 13289205 ~ 13292423 (-) True G112299
TU165828 lncRNA upstream 49011 13534721 ~ 13543311 (-) True G112350
TU165843 lncRNA upstream 120921 13606631 ~ 13609334 (-) True G112361
TU165864 lncRNA upstream 132977 13618687 ~ 13619336 (-) True G112377
TU165875 lncRNA upstream 162917 13648627 ~ 13736231 (-) True G112385
TU165880 lncRNA upstream 173295 13659005 ~ 13659470 (-) True G112390
XM_043261089.1 mRNA downstream 153712 13306028 ~ 13319763 (-) True pitpnc1b
XM_043260047.1 mRNA downstream 268878 13201382 ~ 13204597 (-) True josd2
XM_043261894.1 mRNA downstream 302491 13162930 ~ 13170984 (-) True flcn
XM_043261899.1 mRNA downstream 310691 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA downstream 310691 13158802 ~ 13162784 (-) True zgc:174888
XM_043260533.1 mRNA upstream 1641 13487351 ~ 13494251 (-) False u2af2a
XM_043260532.1 mRNA upstream 1641 13487351 ~ 13494237 (-) True u2af2a
XM_043260536.1 mRNA upstream 1641 13487351 ~ 13494231 (-) False u2af2a
XM_043260534.1 mRNA upstream 1641 13487351 ~ 13494231 (-) False u2af2a
XM_043260535.1 mRNA upstream 1641 13487351 ~ 13494231 (-) False u2af2a
TU164609 other downstream 2061698 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2187043 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2590264 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2607047 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2725175 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 168350 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 748844 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1423615 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1982770 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1982770 15468480 ~ 15496375 (-) False rps19

Expression Profile