RNA id: XM_043260547.1


Basic Information

Item Value
RNA id XM_043260547.1
length 1570
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC122360164
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14526845 ~ 14533075 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGTGTGAAAACTGTTGGAAGTGACAAGCTGGAGAAGAGCTGATGATAGGAAGAAAAGTCTTACAGATACAACTATGGCTGAAAAGTGTCTCATGTGTCTGCTGCGACTGACCATTCTCTGCTCACTTCTCACAGGTACCAGTGGAGCAGAAATGACTTATGTGTTCAGCAGTTCTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCACTTTCTGACTGTACATCAACTATTTGGACCTACAGCAGACAATCAAATACAGTTGAACTGATTGCtggaggaaaaaagaagaaagacgtAGAGAGACATGAGAGACTGAGTCTGGGCTCTGACTGCTCTCTAAACATCcagaaaattacagaaaaagatAGTGGACTTTACACCTGCCAACAATATGTGAATAGACCACCAAGTGATGCACCTGTTTATCTGTATGTTCTCTATGtctCTTCATCATCGTCTCAGTCTGAGATCAGTCCAGGCAGCTCTGTGACTCTCTTCTGTCAGTTGTTTTATGATGGAGTCTCTTGTGATGCTTTGGTCCGTGCTGAAGGAGTTCAGCTGATCTGGGTGAATGAGGCCGGTGTGAATCTTCAGACAGACCCCAGATATAAGATATCATTCTCCTCAACATACTGCTACAGCTCTCTGACTACAAGACTCCTGAGTGAAGATCTCAACAGAGAGTGGAGATGTCAGGTTACTCAGAGAAATCAAGTGAAGACCTCAGTCTCATATACTGTCAAGTATTCAACTCCATTTGAGACAAAGACAGTGGCTCCTGTCACCAGCTCATTGACTACCACAGTAACTTTCACTCCACCAGCTCCATTTGAGACAAAGACAGTGACTCTAGAGACAGTCTCTAACTCAATGACAACCACACCAGTAACTTTCACTCAACCAGATGGTAGAACAATACCAGTGATTCCAACCCACATCACATTCTGCCATCTTACACCAATTAAAGTGATTGTGATTATTGTTGAGGTTGCAGTGTTTGCTGCTCCTACTGTGATTCTTCTTCAGATCATCTGTGCAAGAAGAGCTGGGAGGAAAAACTCCCACCActcagaagaaataaagttgtcttcaatttgagaaaaaaacattcaaatagcAGGAATGTCTTTCAATGTGTTTCATTTagacatataataaatacataatcagTGTATGATAGTATGCTGGGGATTTTGTACATCAACAATTTTGTCCATTGCTGCGGCCACCATCATCTGGAGCTGGAGTAACCTGGTTTTCCACTAGAGAGCACTCCTCCTCACATTATTGTCATTCCTTCACGGGCTTCATCTAGCATTAGACTTGGTCTGGACTCTTCAACCATACCTGCTCTTGTCAGTCATCATTAAGTCGTAGATGTTAGTTCAGAGTGTTTGTATCCTCTTCTAATgtcttggggtttttttggtctTCTGACTGTGGAtttctgtgtttgtctgcaTCTAGGACTTAAACTAATCACTGTTTGCTGTTTGGTTGTGTGTGGCCTGTGTCtggttttaaattgtttatggATTATTCTTCTAATAAATGCTCCTCAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166305 lncRNA downstream 28101 14498526 ~ 14498744 (-) False dicp3.3
TU166260 lncRNA downstream 198642 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 223310 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 230273 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 315906 14210693 ~ 14210939 (-) True G112474
TU166339 lncRNA upstream 49408 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 49408 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 49408 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 58291 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 100143 14633214 ~ 14638332 (-) True LOC122359963
XM_043260558.1 mRNA downstream 2729 14518061 ~ 14524116 (-) True LOC122360169
XM_043260555.1 mRNA downstream 11137 14510825 ~ 14515708 (-) True LOC122360167
XM_043260556.1 mRNA downstream 11177 14510825 ~ 14515668 (-) False LOC122360167
XM_043260557.1 mRNA downstream 18260 14506183 ~ 14508585 (-) True LOC122360168
XM_043260560.1 mRNA downstream 23709 14499900 ~ 14503136 (-) False dicp3.3
XM_043260549.1 mRNA upstream 7144 14540215 ~ 14544742 (-) False LOC122360165
XM_043260548.1 mRNA upstream 7144 14540215 ~ 14544739 (-) True LOC122360165
XM_043261381.1 mRNA upstream 11776 14544847 ~ 14557065 (-) False setdb1b
XM_043261380.1 mRNA upstream 11776 14544847 ~ 14557065 (-) True setdb1b
XM_043261481.1 mRNA upstream 35243 14568314 ~ 14581242 (-) True otoa
TU166030 other downstream 225226 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 842936 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3115068 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3240413 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3660417 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 376254 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 935409 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 935409 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 935409 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 959750 15492821 ~ 15496375 (-) True rps19

Expression Profile