RNA id: XM_043260557.1



Basic Information


Item Value
RNA id XM_043260557.1
length 1007
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122360168
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14506183 ~ 14508585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAAAGGCTAACTGTAACAGAAAATGGCTGATAAGTGTTGTATGTGTTTGCTGGGACTGATCATTCTCTGTCTGCTTTTCACAGGAAGCAATAAAGCAGAAGTGACTAATGTGTTCAGCGGTTCTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTCTTTCTGACTGTACATCAACTACTTGGACCTAcagcaaacaatcaaatacAGTTGAACTGATTGCtggaggaaaaaagaagaaagacgtAGAGAGACATGAGAGACTGAGTCTGGGCTCTGACTGCTCTCTAAACATccagaaaatcacagaaaaagatCGTGGATTTTACACCTGCCAACAATATGTGAATAGCCCACCAAGTGATGCACTTGTTTATCTGTATGTTCTCTATGtctCTTCATCATCCTCTCAGTCTGAGATCAGTCCAGGCAGCTCTGTGACTCTCTTCTGTCAGTTGTTTTATGATGGAGTCTCTTGTGATGCTTTGGTCCGTACTGAAGGAGTTGAGCTGATCTGGGTGAATGAGGCCGGTGTGAATCTTCAGACAGACTCCAGATATAAGATATCACCATCAGAACACTGCTACAGCTCTCTGACTACAAGACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCAGGTTACTCAGAGAAATGAAGTGAAGACCTCAGCCTCATATACTGTCAAGTATTCAGGTTTAATGGATTCAACAACACATATTCCAGTCAGCAGCTCAAACCCTGAGAAGATATCAAGCCAAACAACAGCAATACAAGTGATTGTGATTATTGTTGAGGTTGCAGTGTTTGCTGCTCCTACTGTGATTCTTCTTCAGATCATCTATGCAAGAAGAGCTGGAAAGAAGGACTCCAACTACACAGAGGAAACAGAAATGCCTACAACGTTAgaataacattacaataatacTCTTTACAACAGGCAATATTTATATTCGTGTTTATGgatattataaacatttgtaCACAGCttctaataaaatttta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166305 lncRNA downstream 7439 14498526 ~ 14498744 (-) False dicp3.3
TU166260 lncRNA downstream 177980 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 202648 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 209611 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 295244 14210693 ~ 14210939 (-) True G112474
TU166339 lncRNA upstream 73894 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 73894 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 73894 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 82777 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 124629 14633214 ~ 14638332 (-) True LOC122359963
XM_043260562.1 mRNA downstream 3047 14498263 ~ 14503136 (-) False dicp3.3
XM_043260561.1 mRNA downstream 3047 14498263 ~ 14503136 (-) False dicp3.3
XM_043260559.1 mRNA downstream 3047 14498263 ~ 14503136 (-) True dicp3.3
XM_043260560.1 mRNA downstream 3047 14499900 ~ 14503136 (-) False dicp3.3
XM_043261505.1 mRNA downstream 23039 14476615 ~ 14483144 (-) True LOC122360687
XM_043260555.1 mRNA upstream 2240 14510825 ~ 14515708 (-) True LOC122360167
XM_043260556.1 mRNA upstream 2240 14510825 ~ 14515668 (-) False LOC122360167
XM_043260558.1 mRNA upstream 9476 14518061 ~ 14524116 (-) True LOC122360169
XM_043260545.1 mRNA upstream 18260 14526845 ~ 14533075 (-) False LOC122360164
XM_043260547.1 mRNA upstream 18260 14526845 ~ 14533071 (-) False LOC122360164
TU166030 other downstream 204564 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 822274 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3094406 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3219751 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3639755 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 400740 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 959895 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 959895 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 959895 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 984236 15492821 ~ 15496375 (-) True rps19

Expression Profile