RNA id: XM_043260584.1


Basic Information

Item Value
RNA id XM_043260584.1
length 2411
RNA type mRNA
GC content 0.38
exon number 5
gene id si:dkey-79d12.5
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15754181 ~ 15759667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCGAGCCCAGCGCGAACGAAGAAACGTGGAGCACTAGTGTACTACAACAAGGAAGCAACGTGCTTACTCAGGCTATTAGTCTGCTTGGATATAACCGTTTTGAGGAACTATCGCTGAAGAGCACGATAAACAGCCAGTCGTTTTGGATTCAGCGTATATCGTGGTGAGAATGAAGAAGGAAGTGAGTGCTGGAGTGAACTTTCTAAAAGGTTTGGCAGTGGAGCGTGGAGGTGTGGATCAAATTAAAGCCAAACTTTTCGCTGCTAAGTTACAAGAGCTCCTGCTTAAAAAGTTCAGAGACCACTGGTACCCAGACAATCCTTGCAAAGGACAGGCATACAGATGCATCAGAATAAATGACACAATTCCCTATGACGAATCAGTATCTCAAGCGTGCATGGACAGCGGCTTAAAGCCAAGTGAGTTGGGCTTTCCTCGTGAGATCACAATCTGGATCGATCCGTCGGAGGTGTGCGTACGGTCTGGGGAGAATGGCAGATATTTTACAGTAGCTCAGTTTGCTGAAGTTGAGGATGAGGAAAAGGATGATACTTTTAGCCAAGTGGATTCTGTGAATCTAGATACATCCGACTACCACTCAGCGACTTCGTCTGATTGCGGCTCAGCGGTCTCAAGTGATACAGAGGAGGAGGTGAAAGAGCACCGAACAAAAAAAGGAGAGGAGAGAACAGTGAAGAACACATGTCACGCGACAAGATCTAAAACAAGGGAGCCTAAAGGGCCACGCAAGTTTCCTCCAGCTCAGATCCCTGGCCCGCAGTACTTTTATAACCCGGCACAGATATGGCCCAAGTACAAGAAGAAGAGAGGCGTGTTCTTCACGACTGTATGTGCACCAGCACCTTCTCCATTGTTTGCTTACTACGTCGTACCCAAAGCACCTCCTCAGTTCATTGTGCCTCACGCTACCCTCCAAACCTGGGGGACAGTGAAAGGGTAACCAAAGCCTGTGTATCTGTAATGTAAGACGCATCTGCCAATCTGCAGGGAACTTtatagcatattataatgaaatcATAAACTTGAAATATAGCGTCAAGCATGTTGACTTTCTACATTTTTCACTGATTTTGGGCCTATATATTCAAATCAACTTTAAGCTTTTCATTCCACCTATttaccattatttattttttctttaaggtTTTTAGCTCTACGTTTTTTTATAtgctaaaaatatgtttaaacttCTCTTCCACAAAACAATGGCTTTGTTATAACTTGGATCATAATCGCACACAGCTATTATTTCTCAACTTTGCCAAAGTTGGATGCGTACTTGCGTGGACTGCATACTTGAACTTTATTAGTCGTAGATATGAAAAGCACAGCTTTTCTAGTAGCTTTTGTAAtgagtgtttaaatgttttggtaaCTTTTTATTCATGGTGTACTTGAGTGATATTTAATGAGGTAGAGTTGGTTTGAGTGAATGTAATTATTCACTGAAATACTCAATGGACGCACATTCCCAAATTTGACCAGCGGTTCAGCTCAGGTGTAATAGTTCATGAAGTTACCTCTAAAACAGCAAGCATCTTATACCTTTTCTATTAAAAGTAATAGAATTTACTGAAGCCAAAGAGTGCTGTGTgagtgacattttaaattagtttctgCATATAACGCTCCTGACTAATGGAAAATCACCTTTAAGAAGAATCACATCTGATGTGGGGAGGACtgcattaacaaaaacattaatattaattaattatattaaattctgTGCACAATATTACCATTTACCTAAGTGTACTGtaattgtactgtatttttttccaatACCACTAGGTGGTAGTATACATCGCCTCAAGCCATAATTTAATTACAAGCcatatttctacatttcattATCTTGATATTGTGATTGTACATAACAGATTTTCTTCTTGtagtatttgttttgtaaaaaaaaaaaaactgcctgtAAAAGTGAACAGTGTCATCTCACGATTGTCACAAACTATTTTAGAATTTGCCTTTTTAGATTGTACCTTTGCTATatcatgaatattttttatataaattaattgtgTGCAGCTTTGTATGTTAAACTTATAACCTATGCTGTGTTTACAAAGTGTTGCCTTTCTGTCTCAGTCttcacatgcatatttatttttgctttcttttaaatgttttgctgttaCGCAATCACTgtaaatttgcatttgcaaaagaaaaataatgagcTATGTCTAACGGTtgttaagaatatatattttattgctgaAACAGTAACCGATTTATTGtttctatttaatttgattatggTACCATAAAAATGTCCCTGAATTGTATCGATTTGGCTGATTCTGAATTGCCGAATTGTGCATTTCACAGTATTCTTCGTAGattgaaaataaacacttttcgtACTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167117 lncRNA downstream 36295 15709738 ~ 15717886 (-) True G113168
TU167130 lncRNA downstream 48122 15705823 ~ 15706059 (-) True G113179
TU167112 lncRNA downstream 82062 15665236 ~ 15672119 (-) False fxyd6l
TU167110 lncRNA downstream 83170 15665236 ~ 15671011 (-) False fxyd6l
TU167138 lncRNA upstream 3802 15763469 ~ 15763745 (-) True G113187
TU167205 lncRNA upstream 146566 15906233 ~ 15906830 (-) True G113232
TU167204 lncRNA upstream 147432 15907099 ~ 15908673 (-) True G113231
TU167216 lncRNA upstream 151645 15911312 ~ 15946683 (-) True G113236
TU167209 lncRNA upstream 169555 15929222 ~ 15958664 (-) False G113234
XM_043260583.1 mRNA downstream 271 15735273 ~ 15753910 (-) False kcnn4
XM_043260582.1 mRNA downstream 271 15735273 ~ 15753910 (-) True kcnn4
XM_043262060.1 mRNA downstream 29852 15722112 ~ 15724329 (-) True LOC122361102
XM_043261694.1 mRNA downstream 33058 15719163 ~ 15721123 (-) True negaly6
XM_043261581.1 mRNA downstream 50001 15699733 ~ 15704180 (-) True LOC122360743
XM_043260368.1 mRNA upstream 39419 15799086 ~ 15804702 (-) True has1
XM_043260373.1 mRNA upstream 107637 15867304 ~ 15869211 (-) True prss1
XM_043260718.1 mRNA upstream 176980 15936647 ~ 15938890 (-) True lratd2b
XM_043260914.1 mRNA upstream 200002 15959669 ~ 15963708 (-) False prelid3a
XM_043260913.1 mRNA upstream 200002 15959669 ~ 15963708 (-) True prelid3a
TU167048 other downstream 257806 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 257806 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 257806 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 258459 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 840535 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 57312 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 97932 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 253297 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 379652 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 458994 16218661 ~ 16228466 (-) False atxn1b

Expression Profile