RNA id: XM_043260585.1


Basic Information

Item Value
RNA id XM_043260585.1
length 4028
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122360189
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8067575 ~ 8074304 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGCGGAATGACTATTGGTGATGAGGAAttgaatgacaaaataaagctCGAATTCTCATATCTTAATATTGTCCGTCGGCATATGATCCCACTGACGGCTTGATACCGAGAAAGCATTGCGTAACCCACGAGGTGTACACATCAGTTATCTCTGCGGTAGCCATGGTGTCCTGCATCACAGACTGCGTTGAAAAGCCCGTCCGGCTTTGTTTTGAAAGTATCGGTAAGTTCGTAGGGCTTCATCCGTGGTGGTTCATCACTTTCCCGCTGGCGCTGTCCGCGGGCCTCGGGGGAGGATTTTACTTTTTGAACGACCTGAAATCCAACGACATTGTGGAGCAGTTCACACCGAAAAACGGTCGAGCCAAAGCGGAGAGGCGGTTCTTTCGAGAAACGTTTCCACCGATTGACACGCAATTTTCGGTTGCGCGATTGAACACCGATGGCGTTTTCGCATCTTTGCTGTTCTCCTGTCGGACAAACGTACTCGGCGTCGACGAGCTGGAAGAGGTCATCCGCGTCGACGGAGAGGTTAGAAGAATCACCGCGGCTCACGACGCACGGCGGCTTGCGTTTTCGGATGTTTGCGCCGCTGCGAACGGAACGTGCAACTCTAACGTGATGCTTGACGTTCTGGATTACAATGCCAGCAACATCGATTTTGTCAAGGTAACGTTTCCTGAGTACTGCCCTTCCGAATTCAACTGCATCCACATGGGAAATATCATCGGTGAGGTGGAGGTGGATAGCAGTGGAGTTGTTCGAAGCGCCAAAGCAATGAGACTCTTCTATTATCTGCGAGAGAGCAATAATACACTGGAAGATGCGTGGCTTCGGGGATTTTTAGACTTGCTTTCTAATGTAACGACCTCTAAAACCGAAgtGTCCTATTTCACATCCATGTCAAGACAACAGGAGTTTGAAAAGAGCACCCAATCTGTCACTGAACTGTTTGCTATTACTTATTTTCTCGCCATCTCATTTTCAATAATATCTTGCCTAAGGTTTGACAACGTGAGGAATAAAGCATGGGTGGCTTTTCTTGGAGTTTTCTCCACTGCGCAAGCAGTGCTATCCAGCTTTGGGTTGCTGTTACTCATAAAGGTGCCATTTGTTATTACTGTGGCATCTTCTCCATTCCTAATTCTTGgaatcGGTATTGATGACATGTTTATCATGATCTCCAGCTGGAAACGGACCAACATTCAAGACACAGTGCCAAAACGCATGGCTGATACCTACAGAGAGGCAGCCGTTTCCATTACTATCACCACCCTGACTGATGTTCTAGCCTTTTACCTCAGCTACGGCAATCCCTTCGGCTCTGTTCAGTCGTTCTGTCTGTATGCAGGCACGGCTGTCTTGTTCTGCTACTTCTATAACATCACTTTCTTTGGAGCCTGTTTGGCTCTGAATGGCAGGAGAGAGGGGGCGAACAGACACTGGTTAACTTGCATGAAGGTCCCAGACGAGGTCCCACCAGGACGGTCTAAAGTGTATACCCTCTGCTGTGTTGGAGGATCGTACGACCATAACACAGGTACTGAGGAAGAGCACCCAGTAACACTGTTCTTCAGGAAGTATTATGGACCGTTTGTGACAGCAGCTTGGAGTAAAGCTTTAGTAATCTTGATTTACTTAACGTACGTTGCCGTTAGCATTTATGGTTGTTTGCAACTCAAGGAAGGCATTGATCTCAGGAACCTAGCACTTGATAAATCGTACATCATCCAGTACTATGAAGCTGAAAAGACATACTTTGATTATTACGGACCAAATATAATGTTAGCTATCAATGGCACATTTCCATACTGGGAGGAGAGTAAACGGCAGCAACTCGAGTCGTGCATTGTACAGTTTCAGGAATTGAATTTTGTCAAGAACTTGACACTGACATCTTGGCTTCATTCCTTTGAAAAGTATGCTGAGGAACGCGGTAAGAACATCAGCACAGAAGGTCAATTTAAAAGACATCTTTATGAATTTCTGGACCACCAACCAATACTCAAACAGGACGTCAATATAACCAATAACGACATAGCTGCTTCACGTCTGTTTCTGCAGACAGTTGTGCAAAATTCAACCGAGAAGAGTATATTGATCTCACTAAGGAAGACAGCAGAGAGCTGCCCATGTCCACTGTTGGTCTACCATCCAGCGTTTATATACTATGATCAATATACAATGATTGGGCATATCACTCTTCAGACCATCATTGTGGCAACCCTAGTTATGCTGCTCATCTCCCTTGTGCTGATTCCAAATCCTCTTTGTGCCTTGTGGGTCGCCTTTGCCATCGCTTCAGTCATTTTGGGAGTCACTGGGTTTATGGCGCTGCTAAACGTAAGTCTTGATTCAATCTCCATGATAAACCTGGTCATTAGCATCGGCTTTTCTGTGGACTTCTCTGCTCATATCTCCTATAGTTTTGTGTCCAGTACGAAGGCCGATGTGAATGAAAGAGTTGTGGAGGCAGTGACACACCTGGGCTACCCCATACTTCAGGGGGCTCTGTCTACAATCGTGGGTGTGGTTGTGCTTTCAGCTTCCAGCAGCTACATATTCAGAACGTTCTTCACCATTGTGTTTCTAGTCATTAGTTTTGGGCTGCTTCATGGCcttatttttattcctgtaTTTCTAACGTTCTTTGGATTTTGCCACAAATTACGGTAGCACCGAATTCGAAAATCAAACATGCTTTTTCTTCAAGTACTCCTTTTCGATATACatgtaaaattaacattttattaaataaactaagtAAAAAGACAATTTCTTGTTTTAAAGGTCTGTTTACCATATTTGATGGGattatatacactactgtttaaaagtttcaaTCAGTTGGTTTCTTCTGCTCATAaaggctttatttaaaaatacacaaaaaattgtaatatttaaaaccatatttatttctgtaatgcaaagctgaatttcagcattattactcatGTATTTAATGTCATGTTGATAATAtagactttttgttttaaaatattttaactttacattctgatcttttaaactttttattcaaacaaatccAGGAAAAATATTAGTTTCCAAAAACTGTTCCCAGCAATCATAATAAATTgacatatcagaatgatttctgaaggatcatatgacactgaagactggagtattgctgctttgatcacagaaataaatagtattttaaagtataataaaaccaatatttgaatttttctgtatttgtgatcaaatagATACAGCCTTGAGGAACACAAGAGACTACATTTAAAACTCAAACACACGGTTTTACAGATAAGGCTTAAGCTAGTCACAGACTAAAATACATGTTTGAGCTgtctcaaataaaaatatcttgctctgacatatcttaaaatatatcagtgtcatTGTTCTCTGTCGAGACGCACACCTGTAATGTTTACTTCTAGggcatttttgtaaaagttgcctaaatatcttaatttaactGAGGCCTAGTCCTGGCATAAGCTAAGCCAAGCCGCTTTTGTGGAACAAGGCCTAAAACTCTTTACTGATCCCAAGCTTTTGAACGGCAGCGTATGCGTCTACTTTGTAAGTCGATTTggataaaatgactaaaatgtaatgtagaCGCTTTTGTCAGCCTTAATGTATGAATGCAGACAATTCTATGAAAAACAAACCACTTTAATTCAAGTGgaattattttataatctatTTATGAACCTTTTGAACTATCAGAATGTTGGGagaattaacattaaaatggaGAGGCAGGAATCttgaattttataaaaaatacctACATTTGTGCTTCAAAGATAAACCAAAGTCTTGAAACATCCGAAGTGTGAGTATTTGATGTCTAactcaacacaaaaaaaagggtGTTATTTTATCGGTGTGGCTTCAAGAGGAAAGTTAATGACACTTCCAAGCAAAGAAACGGGATTGGATGAAAATCCCTAGACTTTAAATTTGGACCAATAAGCAACCACAACACACTCATCAACATCCACACACCACCCCTTAACAATACGC

Function

GO: NA

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252839.1 lncRNA downstream 74708 7988950 ~ 7992867 (-) True LOC122360778
XR_006252846.1 lncRNA downstream 107200 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA downstream 107537 7959291 ~ 7960038 (-) False LOC122360975
TU163204 lncRNA downstream 166567 7883932 ~ 7901008 (-) True G110452
TU163295 lncRNA upstream 8596 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 9065 8083369 ~ 8083825 (-) False mkxb
TU163329 lncRNA upstream 160604 8234908 ~ 8235793 (-) True G110546
TU163331 lncRNA upstream 163454 8237758 ~ 8239176 (-) True G110548
TU163610 lncRNA upstream 473478 8547782 ~ 8551552 (-) True G110753
XM_043260655.1 mRNA downstream 14390 8005718 ~ 8053185 (-) False mib1
XM_043260652.1 mRNA downstream 14390 8005718 ~ 8053185 (-) False mib1
XM_043260656.1 mRNA downstream 14390 8005718 ~ 8053185 (-) False mib1
XM_043260654.1 mRNA downstream 14390 8005718 ~ 8053185 (-) False mib1
XM_043260651.1 mRNA downstream 14390 8005718 ~ 8053185 (-) False mib1
XM_043260483.1 mRNA upstream 8602 8082906 ~ 8092455 (-) False mkxb
XM_043260482.1 mRNA upstream 8602 8082906 ~ 8092455 (-) True mkxb
XM_043260404.1 mRNA upstream 30922 8105226 ~ 8143954 (-) True mpp7b
XM_043260193.1 mRNA upstream 120797 8195101 ~ 8200339 (-) True adipoqb
XM_043261660.1 mRNA upstream 165027 8239331 ~ 8256537 (-) True LOC122360799
TU163187 other downstream 236858 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 448990 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 448990 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 866194 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 984051 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 16347 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 141725 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 224485 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 237961 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 559046 8633350 ~ 8636222 (-) True wu:fj39g12

Expression Profile