RNA id: XM_043260610.1


Basic Information

Item Value
RNA id XM_043260610.1
length 2276
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC122360201
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23103170 ~ 23109883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTGCAGTACCATCACGGGGAAAAGAGGGCTGGACATGATGATGCACGAAGAGCATGAAAGTGAAAGTGCAGAAGGAGAGGGCGGGCTGCGTTTTAACACTTGTAATCATGATTGTTTTTTgTGTTATTGTCCTCCTTCTTCCTGTGTGTGGGTCAGTGGCTTTGGCTGGATGGGTGCAGTCACCTGGATATCCACGAGGGTACGAGCCCCATTCTAACATGACCTGGAAAAAGTGTGCTACGACCGGACACAAAATCACGCTCACTCTCATACATTTGGACCTAGAAGAAAGCTTTGATTGCGAGGACGATGCCTTGAAGCTATTTGCAGATGAGATGCTTCTTTCAAATCTATGTGGACGGAAGTCCATGAAGGAGCTGCAGgcatctgtcaatcctttcctcCACTCTTCCTCTGGTGGTTGTCTCTCTATTTCCTTTCTTGCAGACTACTCGAAcagtgagagacacactggaTTTATAGGCTTTTACACAATACAGGATGTTAATGAGTGTATGGACCCTGAAAATGAGTGCACCCAACTCTGCAACAACTACATTGGAGGCTATCGCTGTTTCTGCAGGCCAGGTTACAACCTTGACTCTGATAAGCACACCTGCAAAGTGAGCTGCAGTGAAGATCGCACAGGGTCACAAGAAGGTGTGTTGTTGTCACCTGAGTGGCCTGAGCCGTACCCAGAAAACTCTTTGTGTTCTTACATTCTGGCCGTAGAAGAAGGTCTGCAGTTTGAGCTGACATTCACTGGAGTGTTTGATTtggagaagaaagagaatgGAGAATGCATCGACTCCTTAACCATAAAAACTCCCTTTGGTCACGTTGACACATTTTGCGAAAGGGATGTCCCTTCGTCCCTGCTCACAGGGTCTCAGCGTGTTGAGATTATCTTCAGGACAGACCATAAAGGAGCAAACCGAGGTTTTAACCtctattacaaaacaaaagTAATGAAATGTACTGGACCTGTGACACCAAAATCTAGTCTGAACCCGCAGCTTTTGGAATATTCCACAGGCGACAAAGTGACCGTGAAATGCGACAAAGGACATGTATTGAAATCACAGGTATCAGCTGAAGTTCAGTATAACGCCACATGCCAGAAGAATGGACAGTGGAGTCCTGTTATTCCCTGCGAACctGTGGATTGTGGCATTCCGGAGCTTCCTGAATTAATGGAGCTATCAGATGAAGATCCTTCAACAACGTATTTGAACCAGATCAGTCTTAAgtgtgcaaataaatattatcaaatgGATAATAATGGTAATTTTACCTGTAATGCTGAGGGTAAATGGGAGTCTGAGAGTGGTCAAAATGATTTGCCTAAATGTCAACCAGTGTGTGGAATTAATACAGAGGCCTCTTTTGATGGCAGAGTCTTTGGTGGGAAGCCAGCCAGATTGGGACAGATTCCCTGGCAGCTCCTTCATAGGCAAAATCCCAGAGGTGGTGCATCTCTGATCAGTGATTACTGGGCCCTTACAGCTGCTCACGTAGTGGATGGATATGAAAATGGGGCCATGAATTGGTTAGGTGGAATAATTGATGGTCAGGACAAAAACCCAGTCACTATTGAGACagaaaaaataatcattcatcCAGGATACCAAAAAGTAGGACTGgggaaaaaccaaacaaactatGATTATGACATCGCGCTAATCAAAATGTCTAAAAGAGTGTCTCTAGGTACAAACTTAAGGCCAGTGTGTCTGCCTAAGCAAGCAGATGAACCTGTGAAAGAGGGCACAGTCTCAGgttttggaatatttaaaagaaatacagtTAGTAGACGTCTGCTTTATGGACATGTCCAGATACATCCACTTGATGAATGTAATTCAGTAGGTTTGCCTGTCACTGATAATATGATCTGTGCTGGAGGAGACGAAGTAGACAGTTGTCAGGGTGATAGTGGTGGTCCTTTGTTTTCTCCTGTTCTGGGCTACGGGTCTCTAGAAAAGCCCTATAGTCTTACAGGCATTGTATCATGGGGCCCTTCTGGATGTGGGCATGAAGGCTTTAAAGGCTACTATACTAAAATCCAAAACTGCCTGGATTGGATCAAGGAAACCATGGAAAACAACTAATATGAAATCACTGAAATAATATACACCTACACCTGTTGTTAATTTTACCATCTGCTGTATCTGATTAACATATACCCATCTGCTATTTTCACATAATCACattgaattttaaaacttttgtaTTAAGTTGTTTTATACTAACCAGTAAAAGAGTTTACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170608 lncRNA downstream 25300 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 25300 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 29720 23072259 ~ 23073450 (-) True G115611
TU170664 lncRNA downstream 46640 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 50895 23050307 ~ 23052275 (-) True G115599
TU170695 lncRNA upstream 55310 23165193 ~ 23167940 (-) True G115621
TU170714 lncRNA upstream 75167 23185050 ~ 23189650 (-) True G115631
TU170758 lncRNA upstream 216325 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 706014 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 707017 23816900 ~ 23817100 (-) True G115911
XM_043260608.1 mRNA downstream 468 23097267 ~ 23102702 (-) True LOC122360198
XM_043260604.1 mRNA downstream 6519 23089957 ~ 23096651 (-) True LOC122360196
XM_043260337.1 mRNA downstream 13576 23081229 ~ 23089594 (-) True LOC122360042
XM_043261710.1 mRNA downstream 30981 23064745 ~ 23072189 (-) True LOC122360867
XM_043260164.1 mRNA downstream 120279 22977925 ~ 22982891 (-) True LOC122359931
XM_043260617.1 mRNA upstream 7615 23117498 ~ 23121209 (-) True rbp5
XM_043260612.1 mRNA upstream 12468 23122351 ~ 23139126 (-) True ptpn6
XM_043260615.1 mRNA upstream 12468 23122351 ~ 23139120 (-) False ptpn6
XM_043260613.1 mRNA upstream 12468 23122351 ~ 23138865 (-) False ptpn6
XM_043260611.1 mRNA upstream 12468 23122351 ~ 23137555 (-) False ptpn6
TU170599 other downstream 169203 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1014116 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1134635 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1299366 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1398211 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 409925 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 478302 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 560015 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1216824 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2557936 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile