RNA id: XM_043260612.1


Basic Information

Item Value
RNA id XM_043260612.1
length 2366
RNA type mRNA
GC content 0.44
exon number 17
gene id ptpn6
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23122351 ~ 23139126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTAATGTACTTTAACTGTCAGCTTCGATGACACCCGGCCTGCAAAATCAGCCTGCAAGGAAAAAGGCATAAGTAAAAGATGATTAAcagggagaaaaagaaagattaaataaattcagaaagCCACTGGAGAGAAGCAGCAGTAAGAGAGGAAAAAGCCACAAAAAGGAAGGAAGAAGTTTGTAACATTGcatgagagagtgagagagagagagggagggacaTAAGACAGGCTTATATACACTGTCAGGACGACCTTGCTCTTCAAACCACCAAAAACTGTTTACATTTCGAGAGAGAGGAGAAGCACAGAGGGCAGAGGAACATTTGAAAAAGGAAGATGGTCCGGTGGTTCCACAGAGATCTGTCTGGATTAGATGCAGAGTCCGTTTTGAAGAGCCGAGGTGTCCATGGCAGCTTCCTGGCCCGACCGAGCAAGAAGAATGTGGGCGATTTCTCCTTGTCTGTTAGaGTGGGAGACATAATCACACACATTAGGATTCAGAACACGGGTGATTATTATGACCTGTATGGAGGGGAAAAGTTTGCGACGTTGGCCGAGTTGGTGGAATACTACACTGGAGATCATGGAACTCTACAAGATAAAGATGGAACCATTATTGAGCTCAAATACCCTTTAAACTGTTCTGATCCCACCACTGAGAGATGGTACCATGGCCACTTGTCAGGTCCAAATGCTGAAAAGCTGCTCCGAGAGCGTGATGAGCCCGGGACGTTCCTGGTGAGGGAGTCGCTCTCCAAACCGGGAGACTTTGTTCTGTCTGTGCTGACCGATGATTTGACCAGTTCTGGTAGGAGGGTCTCCCATATCAAGGTCATGTGCAACaatgaCCAGTACACAGTTGGCGGTAAAGAGATTTTTGACACTTTGACAGACCTTGTGGAGCATTTCAAGCGCACTGGTATTGAAGAGTTGTCTGGGACGATGGTTTACCTCAAACAGCCTTATTACTCCACAAGGTTGAACGCAGCTGATATTGAGAGCAGAGTAAAGCAGCTCGACCAGACTGCAGATAACATGGACGGGGccgataaaaaaataaaagctgggTTCTGGGAAGAGTTTGATGCGCTGCAGAAGATGGAAACTAAGGTAACGAAGAGCAGAGACGAAGGAATGAGACcggaaaacaaaagcaaaaacagatatAAGAACATCCTTCCCTtTGATGACACTAGGGTTACCCTGCAAAACGCAGATCCCAATGTTGTTGGCTCGGATTACATCAATGCCAACTACGTTATAAACAAATTAATGGATATTAGGTACCAGAAAGTTTACATTGCTTGTCAAGGCTGCCTCGCAACAACTGTAAATGATTTCTGGCAAATGGTATGGCAAGAAGAGACACGAGTAATCGTCATGACAACGAGGGAGGTTGAGAAAGGACGGAATAAGTGCGTGCCATACTGGCCTACTACTGAAGGAGAGTCAAAGGAAGTAGGCAGATACGTGGTGACGTTACACACTGAGAAGGATGCCACTGATTACAAGGTCAGAGTGATGGAGCTCAAAGCAACACACCGGAAAGAGCCACCTCGCACCATTTGGCACTACCAGTATTTGAGCTGGCCGGATCACGGCGTGCCACAAGAGCCCGGTGGAGTGCTTAGCTTTCTGGAGCAGGTCAATATTAAACAGCATGAACTGTCTTCGACTGGACCCATGATCATCCACTGCAGTGCTGGTATTGGGCGAACAGGAACCATTGTGGTAATCGACATGCTTATAGATAACATTGACGCTAAAGGTCTGGACTGTGACATCGACATCCAGAAATGTATTCAGATGGTTAGAGATCAGCGGTCTGGCATGGTGCAAACTGAAGCCCAGTACAAGTTCATCTACTTGGCTGTGCTGCAGTATATAGACTCAAGGACGGTCACACAAAGGGCTGTCATGGAAACAGAAACCGAATACGGAAACCTCTCAATTCAGCCTAAACACCAGAAGGCCAGCCGCAAAGCTTCAGCAAAaaaaaatgaAGACGTTTATGAGAATCTGGGAGCAAAGGGAAAGAAAGATGTCAAAAAGCAGAAATCGGAGGATAAGAAGGGTGGATCTGTCAGGAAACGATAAAcgtagataaaaagaaagatgaaatttaattttgctTCATGTTTGTAcagcttatttttaatttttttccgcggttttaaagaaaactgagCCAGCAATGCCAAAGTATTTGACCTTCTCAAACAAATCCTtctatgtttttgttaatatgtatttgttaattgtttaatatttagtacagcatttttaagtaaattcaCTAATTTGTAATTGATATCAATCATCCACTCGTTCtcagttttaataaaagttttgttcatGTCA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05697 PTPN6, SHP-1; tyrosine-protein phosphatase non-receptor type 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170608 lncRNA downstream 44481 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 44481 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 48901 23072259 ~ 23073450 (-) True G115611
TU170664 lncRNA downstream 65821 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 70076 23050307 ~ 23052275 (-) True G115599
TU170695 lncRNA upstream 26067 23165193 ~ 23167940 (-) True G115621
TU170714 lncRNA upstream 45924 23185050 ~ 23189650 (-) True G115631
TU170758 lncRNA upstream 187082 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 676771 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 677774 23816900 ~ 23817100 (-) True G115911
XM_043260617.1 mRNA downstream 1142 23117498 ~ 23121209 (-) True rbp5
XM_043260610.1 mRNA downstream 12468 23103170 ~ 23109883 (-) True LOC122360201
XM_043260608.1 mRNA downstream 19649 23097267 ~ 23102702 (-) True LOC122360198
XM_043260604.1 mRNA downstream 25700 23089957 ~ 23096651 (-) True LOC122360196
XM_043260337.1 mRNA downstream 32757 23081229 ~ 23089594 (-) True LOC122360042
XM_043260606.1 mRNA upstream 1941 23141067 ~ 23158902 (-) False chd4b
XM_043260607.1 mRNA upstream 1941 23141067 ~ 23158901 (-) False chd4b
XM_043260605.1 mRNA upstream 1941 23141067 ~ 23158901 (-) True chd4b
XM_043260463.1 mRNA upstream 30392 23169518 ~ 23175441 (-) True cdc42l
XM_043261105.1 mRNA upstream 70433 23209559 ~ 23221351 (-) True rbfox1l
TU170599 other downstream 188384 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1033297 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1153816 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1318547 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1417392 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 380682 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 449059 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 530772 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1187581 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2528693 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile