RNA id: XM_043260635.1


Basic Information

Item Value
RNA id XM_043260635.1
length 3891
RNA type mRNA
GC content 0.49
exon number 20
gene id arnt
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5834157 ~ 5850214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTCTGCTGCTTACCGAAAGATTACGGGCGCCATCTTGGATCAGGGGAGGTTTTTAAACTGGAAAAAGTCAAAgagcaggaaaacaaaaaaacaacaataaaacatcgGCAAAACACGTCCGTTCGGAGCGGCGGCGAAAATGACACTAGGTTTGAAGTCATGACATCTGTTTTAAAGGACTTTTTCGAAACTCGGACGAAGTAAAACGTCAACAAGCGGCGGAGCGGGAGACTCCTCTCGTCAGCTGGGAAAGTTGTTTTGTACATGTTAGCTCGTTCGCGAACACCTCTATCTGTCGGATATGGCATCGGCCAATGCAGatatGTCTGAGGTGGCATCAGCTGGATCTCATTCAAAGACCAACAACAAACGACAAGCCACCTCAGACTATGAAGACGACGAGGGAAGCAAGCTGTTCAGGTGTGATGACGACGGAGGCGGATCCAACGACAAGGAGAGATTTGCCAGGGAGAATCACAGCGAGATCGAGCGCAGGCGGAGGAATAAGATGACGGCTTACATCACGGAGCTGTCGGACATGGTGCCCACCTGCAGCGCTCTGGCGCGTAAACCGGACAAGCTGACCATCCTGCGCATGGCCGTGTCTCACATGAAGTCCCTGAGAGGCGGCGGCGGCAGCAGCACCGATGGAGCTTATAAACCCTCCTTTCTCACAGACCAGGAGCTCAAGCACCTGATTCTGGAGGCGGCTGATGGCTTTCTGTTCGTAGTGTCGTGTGAAACGGCCCGCGTGGTTTATGTGTCGGACTCGGTGACGCCGGTTCTGAACCAGACTCAGTCGGACTGGCTCGGGTCATCTCTGTACGACCAGCTCCATCCGGACGACATCGAGAAGCTCCGAGAGCAGCTCTCCACCAGCGAGAACAACAACGGCGGTCGGATGCTGGACATGAAAACAGGCACGGTGAAGAAAGAGGGAGGGCAGGCCTCGGTGAGGATGAGTATGGGCGCACGCCGCTCCTTCATCTGCAGGATGAGGTGTGGAGTGTGTCCTGTAGAGCCGGTGTCTATGAACAGACTCAGCTTCCTGAAAAGCAGAAACAGGAATGGACTGGGTCCTGCAAAGGAAGGCGATCTGCAGTATGTGGTCGTGCACTGCACAGGCTTCATCAAATCCTGGCCTCCTGCAGGAGTCACTCTTTCTGAAGAGGAGGCCGATAACAATCAGGGAAATCGTTTCTGTCTAGTCGCCATTGGAAGGCTACAGGTCACATGTTGTCCGAGCGACACCAACGTTAATAACATCAGTGTTCCGGTGGAATTTATTTCCCGCCACAACTGTCAGGGTCTCTACACCTTTGTGGATCACCGATGTCAGGCGACGATCGGCTACCAGCCTCAGGAATTACTGGGGAAGAACGTTCTGGAGTTTGCCCATCCAGAAGACCAGGGCTTACTGCGAGACAGCCttcagcagGTGGTGAAACTGCGAGGTCAGGTGCTTTCGGTGATGTTCCGCTTCCGCTCGAAATCCCGCGAGTGGATCTGGATGAGAACCAGCTCGTTCACCTTCCAGAACCCTTTCTCCGAGGAGATCGAGTACATCATCTGCACCAACGCCAATGTCAAGcagatgcagcagcagcaggccgAGTTAGACGGAGGCATGGGACGAGACGCAGACTTTGAAACCAGTCAGGTCGCTCTCCCTCAgGTTCCGGTGCAGAGTGTAGTCAGTCCTGATCACAacTCTAAGGCCGTGTCCTCCGGCGGTCAGCAGGTTTACCCTCCAGCAGCGTCTTTCCCCAGCTCTGCTCGTCCAAGCGAGTCCTTCAgGTCAGCTGGAATGCCCCAGCAAATGGTTCCTCACTCGGCGGGGCAGATGCTGGCACAGATGTCCCGTCAGAGCACACCGTCTGGAGCCAGCAACAACCAGAGCCCCATCCAGGCCCAGGTGGGTCCCACGGCGCCTCCTGGAGTCTGGTCTGCTGCACAACCCTTCAACGCACAGCAGATGGCAGGTCAAGTTGGAAAGAGTCAGTCACCTCAGTTCAACATGGGAGGCTTCAGCTCCGCCCCCTCATCCACCACTTCCCCTTCCTTTGGCCAGATGGGCGGGGCTTCTGCATCAATGGCCAACACATCAAATTACCAACAAATGAACAGTCACAACAACCCTTCAACGAATGGATTCGCTGATATTAATCAGATGGGAGCTCAGTTCGGCTCCAGGCCAGCAGAGGCAGTGTCCGGCTGGCAGCAGTGGTCAAATCAACCACACACACAGGGCACGGCTGACACACACCAGCAGCCTCAAAACAACCAGCCGGAGATGTTTCAGgATGTGATCTCAATGTTGGATCAGTCCGGCGGCTTCAGTAACGATGATTTCGCCGAGATGCCCATGTTTCCTCCTTTCCCCGAGTGATCCTGCTTCCTTCGCTTCCTTCACTCCCCGTTGCTCTCTAAGAAATGCGCCGTTTCTTACTCTTTTAACCAAATCTATGGCGGAACCGAGGCACAGAGGGGTCGGAAAAAGAGCGAGAACGGAAGTTATAAGCCATAATGTGAGAATACAGAGTAgcacgcagacagacagacagacagacacgtCGTTGAATTGTGTTCACTTTAAAAATACGCACAATTGCACACTTCAAGCACAAGCGGTCTCACACTGTCTGCCGTACACGCACATGCTTTGATTAATGAGATGGGGATGGGTtcgtagacacacacacacacacacacacacacacacacacaaaggcagTCTGCTCTGTCTGTCTCGAACTGATGTGTACCGATTGCACTGCTTTTGACCCCCATGATGAAACGCGTGAGAACTGAATTGTTGAGTTTGGCTGTGAACGTGCCGGTCGTCTAACGCAGAAGCTgcagcttgttttcttttctttttttatttgaagtctGGAAAATCGACTCCATTTCCACTCACAACTGTAATCGAACTGGTTTATCAGGATGATGAATTTGGAAGCTGAATCGCAAAGTAACTCAATTggaattttgtgttttaaattcgaatgtttttaaaaagcgaCTTTGATTTCGTcagcaacactttatttcacagtgtccttgttacacatgGCGTCTACTTACTTATCATGCAGTTAACCCTAAAAAGACCTTATCGTTAACCCCATGCTAAccctaattattattattactcagtACTTCATGTAATTACACTGTGAGAAGGACtgcttaaaatgaagtgtaGCCTCGCTTCCTTACTCTATTCTGCATCCTGTTTGCTACCTCGGTTCAAATTCAGATGTTTGATGATCTGGCTTCAGTTCATGTTCGGTGCAGTAACACAGACTCCGATGCAGTAAAACTCCTCCGATGTTTTTGCTTTAGATGGACAGATGCATCTCCTCCTCTTTGCGTGCGTTTGACGTGTGAGCTTTCACTCAGGCATGTTTTTGTGAACGCAGTGAAAAAGATTGAGATCAAGCAATAACGAGCAGGTTCTGTGTCCTTCAAAGCCATTTTTGTCGCTATCCTAATAATTGTTATCAAAATGTCTcgttttattataaaagaagAAACCTTTAATGCTTCATCTGGCCTTCGTCTCTTCAGGTTTTCATTTGGAAATCGTTATTCTTGTACAGAGAGTATTCCAGAATTTCTATTGGTGGCGTTGATTATTGCATTTCTTCAGATCgaaagctttttaattaaatgtttgatgtttGCTTTTGAATGTGGGTGTGTCTGCGTCTTTTTTCAGTACTTTTGTGCATTAAATCGAGTGCTcgtttcacctttttttttctcggaTATGAAAGGGTCAGTGCTCCGGTGGCTTTTTTTCTGCtatattttcacacagtttTGAACTGCAGTTTGTGTACaacatagaaaaataaatatatatgtatatgaaatattaaa

Function

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162691 lncRNA downstream 17284 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 20473 5809971 ~ 5813684 (-) True G110100
TU162689 lncRNA downstream 21636 5809971 ~ 5812521 (-) False G110100
TU162682 lncRNA downstream 49928 5783296 ~ 5784229 (-) False si:dkey-283b15.2
TU162680 lncRNA downstream 52194 5778754 ~ 5781963 (-) True G110093
TU162695 lncRNA upstream 2218 5852432 ~ 5852762 (-) True G110106
TU162868 lncRNA upstream 52363 5902577 ~ 6184069 (-) False LOC122359839
TU162879 lncRNA upstream 147407 5997621 ~ 5999361 (-) True G110206
TU162905 lncRNA upstream 268571 6118785 ~ 6119767 (-) True G110221
TU162910 lncRNA upstream 286893 6137107 ~ 6207805 (-) True G110224
XM_043261179.1 mRNA downstream 11307 5820991 ~ 5822850 (-) True mrpl51
XM_043261652.1 mRNA downstream 15539 5817040 ~ 5818618 (-) True ndufa3
XM_043260424.1 mRNA downstream 43623 5782667 ~ 5790534 (-) False si:dkey-283b15.2
XM_043260423.1 mRNA downstream 45155 5782667 ~ 5789002 (-) True si:dkey-283b15.2
XM_043260679.1 mRNA downstream 260357 5571501 ~ 5573800 (-) True dctn3
XM_043261014.1 mRNA upstream 3262 5853476 ~ 5873058 (-) True cers2b
XM_043261140.1 mRNA upstream 26834 5877048 ~ 5900217 (-) False celf3b
XM_043261139.1 mRNA upstream 26835 5877049 ~ 5900216 (-) True celf3b
XM_043261141.1 mRNA upstream 26835 5877049 ~ 5900213 (-) False celf3b
XM_043261145.1 mRNA upstream 26835 5877049 ~ 5900210 (-) False celf3b
TU162692 other downstream 15795 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 474478 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 588696 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 588697 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1738653 4094757 ~ 4095504 (-) True G109724
TU162864 other upstream 94007 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 178994 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 246461 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1231748 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1345276 7195490 ~ 7201381 (-) True LOC122360222

Expression Profile