RNA id: XM_043260654.1


Basic Information

Item Value
RNA id XM_043260654.1
length 5741
RNA type mRNA
GC content 0.47
exon number 21
gene id mib1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8005718 ~ 8053185 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACTGGCTAGAGCTCTGATTGACAATAATGGCGACGCATTCGTCTTGAGTTGCACCTCAATGAAACATTTCTCAAGACCTCATTTTCACCTATTCTTTGATATTACCTACGCTTAAAGGTCGGCTTTGAggatatctttcagaaataacCTCCGAATCTTTTTTCGCAAGGAAGTATTAAGTTCTGCTGGTGGAATTATTGGGAAAGCACTAACAAAGGTCTCCTCATCCGTGGCGATGTGGCTGCTGTTTACAGACCCGCGCGTGCATTTGTTTCGGGCATGAAGAACCGCGAATACTTCACCTACAGCCATTCATTCAGACGTTACACCGCCGTTTAGTAAAAACCGGGACGCTTTGCTGAAACTGGCTTAGTTGCGCTGGAAGCTTTTTGCAGGAGCTTTTCGCGGACGGCAGCTCGCGCAGATATTCTGAATCGCGTCACGCAAAGTTGGACCATCTGTTGAACGCACAGCAAAGTTCGCAAACCATTTTTACATCTCGCGATAAAACGACGGTTGTTTTTTCTAAATCGAGTTTTTCTGCTGTTTCGCTAACGCGGAATAAACGCTTACAACTTTGAGAAGGCTAGCTATAGCTGGTTAGCCATGACTTGCTAACTGGcctttgcttaaaaaaaacagccgTTAGAAACTGAAATGTACCGATTGCCACATTTACCACAAAATTGTgtcctaaataaataattaaaacctaAATTTGTTAACTCTTTCGCAAAAACGCCTTACacgtatacatttatttgttcgcAACTTGTACAGTTAAGTACGTACTTCAGATTACTTCTGTCGTCGGTATATCATACAATTAATTGTATGACTTAAGAAAACTAGGTCATCTTTTTACTTGTCCAAACAGCTAAACCGCCCTCCTTCGCTTGCTGTTGACCCAGATGTAAGACAAGACGAGTCCGTTCATTTAAAACCTCACGTTTTCTGAGCTGTCTTGACGGCTCGCTAAAAGTTACTTTCGTTACAATATTTGCTCGTTAAATGACCACCGGTAGGAATAACAGAGTCATGATGGAAGGAGTTGGTGCTCGAGTTATCCGCGGGCCTGACTGGAAGTGGGGTAAACAGGACGGTGGAGAAGGGCACGTCGGCACCGTCAGGAGTTTTGAAAGCCCGGAGGAAGTGGTGGTGGTGTGGGATAACGGCACCGCCGCAAATTACCGCTGCTCCGGAGCTTATGATGTGAGGATTTTAGACAGTGCTCCCACAGGAATCAAGCATGATGGCACCATGTGTGACACCTGTCGGCAGCAGCCCATCATTGGGATCCGATGGAAATGTGCGGAGTGCACCAACTACGACCTCTGCACCACCTGTTACCATGGTGATAAGCACCACCTGCGCCACAGGTTCTACCGTATCACCACTCCCGGAAGTGAGAGGGTTCTTTTGGAATCTCGACGCAAGTCAAAGAAGATCACCGCCCGGGGCATCTTTGCAGGAGGACGGGTGGTGCGGGGAGTGGATTGGCAGTGGGAAGATCAGGATGGCGGGAATGGAAGAAGAGGGAAGGTGACGGAGATCCAGGACTGGAGTGCTGCCAGCCCCCACAGCGCAGCCTACGTCCTCTGGGACAATGGGGCCAAGAACCTCTACCGAGTGGGATTCGAGGGCATGtCTGATTTGAAGTGTGTGCAAGATGCCAAAGGAGGCACTTTTTACAGAGACCACTGTCCAGTGTTGGGTGAGCAGAATGGAAACAGGAACCCAGGAGGGCTGCAGATTGGAGACTTGGTCAACATCGATTTGGACCTGGAGATCGTTCAGTCGCTGCAACATGGTCACGGAGGCTGGACTGATGGCATGTTTGAAACGCTCACCACCACAGGCACCGTCTGCGGCATTGATGAAGACCATGACATTGTCGTGCAGTATCCCAGTGGAAACAGGTGGACATTTAACCCAGCGGTGCTCACAAAGGCAAACGTTGTACGTAGTGGAGAGGTGGCGGCTGGTGCTGAGGGAGGCAGTTCTCAGTTCATGGTGGGAGACTTGGTCCAGATCTGCTATGACATTGACCGCATCAAACTACTCCAGAGAGGACATGGAGAGTGGGCTGAAGCTATGCTGCCAACCCTTGGGAAGGTGGGAAGAGTGCAACAGATTTATTCTGACAGTGACCTCAAAGTCGAGGTTTGTGGGACATCCTGGACATACAATCCAGCGGCTGTCACTAAAGTTGCTCCTGCTGGATCTGCTGTTACTAACGCTTCTGGagCAGTGTTGACAGAGAGTCCTTCTATGCCTACAGAGCGCCTGTCTCAGCTCCTCAAGAAGCTTTTTGAGACGCAGGAGTCTGGAGACATTAATGAAGAGCTGGTGAAGGCCGCGGCCAATGGTGACCTAGCCAAAGTAGAGGACATCCTGAAGAGACCCGATGTGGACGTGAACGGGCAGTGTGCAGGACACACTGCCATGCAGGCAGCCAGCCAGAATGGTCATGTGGACGTCCTCAAACTGCTGCTGAAACATAATGTGGACCTGGAGGCTGAGGATAAGGATGGAGACCGCGCTGTCCATCACGCAGCCTTCGGGGACGAAGGTTCTGTCATCGAGGTGCTGCATCGAGGTGGGGCTGACCTGAATGCCAGAAACAAACGCAGACAGACGCCTCTGCACATCGCTGTCAACAAGGGCCACCTACAGGTGGTGAAGACTTTGCTCGACTTTGGCTGCCACCCCAGTCTGCAGGACTCAGAGGGAGACACGCCTCTGCATGATGCCATCAGCAAGAAGAGGGATGACATGCTCTCTGTGCTCCTGGAAGCGGGCGCAGATGTCACAATCACCAACAACAACGGATTCAACGCACTTCATCACGCAGCTCTGCGAGGGAACCCCAGTGCCATGCGTGTGCTGCTATCTAAACTGCCACGACCATGGATAGTAGATGAGAAAAAGGATGATGGTTACACCGCTCTTCACCTGGCTGCCCTCAACAACCACGTGGAGGTAGCAGAGCTCCTAGTCCACCAGGGAAATGCCAATTTGGACATACAGAATGTTAACCAGCAGACGGCACTGCACCTTGCTGTAGAACGTCAGCACACACAGATAGTGCGACTTCTGGTGAGAGCTGAGGCAAAGTTGGACGTGCAAGACAAGGACGGAGACACGCCACTGCACGAGGCTCTGCGTCACCACACTCTGTCCCAGCTGCGCCAACTTCAGGACATGCAGGACGTCAGCAAAGTGGAGCCCTGGGAGCCCTCCAAAAACACATTAATTATGGGACTGGGCACTCAAGGTGCGGAGAAGAAGAGTGCAGCTTCTATTGCTTGCTTCCTAGCGGCCAATGGAGCTGACCTCACCATTCGTAACAAGAAGGGCCAGTCTCCTCTGGACCTGTGCCCCGACCCCAGCCTCTGCAAGGCCCTTGCTAAATGCCACAAAGAAAAGACTAGTGGGCAGGTTGGCTCCCGTAGCCCGTCTCTAAACAGTAATAATGAGACTCTCGAGGAATGCATGGTGTGCTCGGATATGAAAAGAGACACGCTTTTTGGCCCCTGCGGTCATATCGCTACCTGCTCTCTCTGCTCGCCTCGTGTCAAAAAATGTCTCATTTGTAAGGAACAGGTCCAGTCCAGAACCAAGATTGAGGAGTGTGTGGTTTGCTCTGATAAAAAGGCAGCAGTGCTTTTCCAACCCTGTGGTCACATGTGCGCCTGTGAGAACTGTGCCAGCCTGATGAAAAAGTGTGTACAGTGTCGGGCCGTGGTGGAGCGCCGCACTCCCTTCGTTTTGTGCTGTGGAGGGAAAGGTATGGAGGATGCCACTGATGATGAGGACCTTACCAGCGGAAATATCCCAGCCTTGCAGAGGGACAAAGACAACACTAATGTCAATGCAGATGTACAGAAGTTgcagcagcagctgcaggaTATCAAAGAGCAGACCATGTGCCCCGTGTGTTTGGATCGCCTAAAGAATATGATCTTCATGTGCGGTCATGGCACTTGTCAGCTCTGCGGAGACAGAATGAGCGAGTGCCCCATCTGCCGCAAGGCCATCGAGCGTCGCATCCTACTTTACTAGAGCGCCTGGCCGTGGCAACATCCCAGTTTTCCAGCCACAGAGTGTGCTGCTGCTCTCATAAGCACCTTTCCTGTATCCGCAAGGCTCTCTGTGTCCACGCTAAGCTAAGACTCATCAGTGTTATATcatcatctttattttatcttttaggCTCGATGTTCGTTCAGTTAACTTGCTCGGATTACGTTCAGCAAGAGGAGGACTGCTTCATCTTGCCATTTTCATCATGCAAGtgcccactttttttttttttgtctgccaCGAGCAGTCCAGCAACACCCGTAAGGACGTGAACTGACACTGTCAGGGTCTGCTTATGTATCATCTTTTATTATGTCAGCGTATTATGCTCATATATCCTGATGCAAACATTTGTATCTACAGTATCCGTGTAGGTCACGATGCAGCATGGTGAAATGCAGAACGTGACTGAACTGTCCCACTGAATCTTTGGAAATTGGTTTTAAAGTCTCATTCTGCGTGACGTAGCGCTCGGTTTTAAATATGTGTAACTGTAAAGCATCTGCATTTACTGGCAGAAGAACGTTTGTCGTGCTcaaacagtgaaataaaacattcaccTTTTAGCAGTACTGTTAGTATAACATTGCATGTTCCTCTTCTGAATTGCTGCTGTactacagtatacacacacacacacacacacacacacacacacaagagtaTTATTGTCACCCATGTTGATAATCGGCTCGTCACCCGATCAGTGCAGGACGGCGCATATTTCCATGCAACTGATTCTTGTTGTCTTTAaaagtttattcattttctatAGAACCATCATTACTGGATTTTTCTCCAGCAGTCCTACTTTATGCATCATATTGTCTTGCCagatatttaatacaaaaaaacaaacaaaaaaacaatagaaatcgCTGGTCCTATGCcattgttccaaaaaaaaaagtgctgtttaTCTTTAACTTACTagttaatttatgtattttacctTTTTCTTCTAAATCTAAAAGAATATACTATGGAATATCACCTTTAAGCTGTGATTGTTAAACGGGGCCTTACTTTAATTAGGCCAAATGAGCACCTGACCAAAAAGAATTTACAATTGAGGACTGCTCATCAAAATAGTCTTTCATGAGCAACTTGACATCCATCTGTGCTCcactaaatatttgttttcctgcGTCCTGTTCCCACCTTGGAGGAGGTCTAAAGTTACGTctacatttgtttcatttcagtgtGATTTAACGCTGCGAAGCAGACATTTTTACTGGAAGCAAAGTACTTTCatactttaaattttaaagatttGTATCACACATCTtttatggtctttttttttttttttccagtattaGTCTTTTTGTggtcattttaacatttaaaaactagatGCACTAATATACCTTAATGGTAGACTTGTATTGTCACGGTTACTCGAACATCctgttttgtactttattttcagtaagcaaaaaaaaactgcccTGGTTTAagaaacacctttttttttctttctttttttttttttttattattgaatgaatgtttaatgtatgATGTACAACATTTATCATAGGAGAAATTCTTTTTTTGCCCTGTATTgcaatttgctttgaaaatgcaTTGCTGAATAAAGATCTAACAAAATGGAGCGGGCTGCTGCATTTTCCGCTTTTGTTTCAA

Function

GO:

id name namespace
GO:0021521 ventral spinal cord interneuron specification biological_process
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0001756 somitogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0071599 otic vesicle development biological_process
GO:0061195 taste bud formation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0002090 regulation of receptor internalization biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001885 endothelial cell development biological_process
GO:0021986 habenula development biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0045685 regulation of glial cell differentiation biological_process
GO:0021508 floor plate formation biological_process
GO:0021519 spinal cord association neuron specification biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252839.1 lncRNA downstream 12851 7988950 ~ 7992867 (-) True LOC122360778
XR_006252846.1 lncRNA downstream 45343 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA downstream 45680 7959291 ~ 7960038 (-) False LOC122360975
TU163204 lncRNA downstream 104710 7883932 ~ 7901008 (-) True G110452
TU163295 lncRNA upstream 29715 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 30184 8083369 ~ 8083825 (-) False mkxb
TU163329 lncRNA upstream 181723 8234908 ~ 8235793 (-) True G110546
TU163331 lncRNA upstream 184573 8237758 ~ 8239176 (-) True G110548
TU163610 lncRNA upstream 494597 8547782 ~ 8551552 (-) True G110753
XM_043261491.1 mRNA downstream 21429 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA downstream 21429 7977629 ~ 7984289 (-) False gata6
XM_043261490.1 mRNA downstream 21848 7977629 ~ 7983870 (-) True gata6
XM_043260903.1 mRNA downstream 54633 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA downstream 54634 7928529 ~ 7951084 (-) True cables1
XM_043260585.1 mRNA upstream 14390 8067575 ~ 8074304 (-) True LOC122360189
XM_043260586.1 mRNA upstream 15815 8069000 ~ 8072880 (-) False LOC122360189
XM_043260483.1 mRNA upstream 29721 8082906 ~ 8092455 (-) False mkxb
XM_043260482.1 mRNA upstream 29721 8082906 ~ 8092455 (-) True mkxb
XM_043260404.1 mRNA upstream 52041 8105226 ~ 8143954 (-) True mpp7b
TU163187 other downstream 175001 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 387133 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 387133 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 804337 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 922194 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 37466 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 162844 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 245604 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 259080 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 580165 8633350 ~ 8636222 (-) True wu:fj39g12