Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043260655.1 |
| length | 5708 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 21 |
| gene id | mib1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056714.1 |
| NCBI id | CM032083.1 |
| chromosome length | 28146790 |
| location | 8005718 ~ 8053185 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0021521 | ventral spinal cord interneuron specification | biological_process |
| GO:0045747 | positive regulation of Notch signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0060113 | inner ear receptor cell differentiation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0002090 | regulation of receptor internalization | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0001885 | endothelial cell development | biological_process |
| GO:0021986 | habenula development | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045685 | regulation of glial cell differentiation | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0021519 | spinal cord association neuron specification | biological_process |
| GO:0021520 | spinal cord motor neuron cell fate specification | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006252839.1 | lncRNA | downstream | 12851 | 7988950 ~ 7992867 (-) | True | LOC122360778 |
| XR_006252846.1 | lncRNA | downstream | 45343 | 7958881 ~ 7960375 (-) | True | LOC122360975 |
| TU163265 | lncRNA | downstream | 45680 | 7959291 ~ 7960038 (-) | False | LOC122360975 |
| TU163199 | lncRNA | downstream | 101125 | 7849679 ~ 7904593 (-) | True | G110449 |
| TU163204 | lncRNA | downstream | 104710 | 7883932 ~ 7901008 (-) | True | G110452 |
| TU163295 | lncRNA | upstream | 29715 | 8082900 ~ 8083300 (-) | False | mkxb |
| TU163299 | lncRNA | upstream | 30184 | 8083369 ~ 8083825 (-) | False | mkxb |
| TU163329 | lncRNA | upstream | 181723 | 8234908 ~ 8235793 (-) | True | G110546 |
| TU163331 | lncRNA | upstream | 184573 | 8237758 ~ 8239176 (-) | True | G110548 |
| TU163610 | lncRNA | upstream | 494597 | 8547782 ~ 8551552 (-) | True | G110753 |
| XM_043261491.1 | mRNA | downstream | 21429 | 7977629 ~ 7984289 (-) | False | gata6 |
| XM_043261489.1 | mRNA | downstream | 21429 | 7977629 ~ 7984289 (-) | False | gata6 |
| XM_043261490.1 | mRNA | downstream | 21848 | 7977629 ~ 7983870 (-) | True | gata6 |
| XM_043260903.1 | mRNA | downstream | 54633 | 7928529 ~ 7951085 (-) | False | cables1 |
| XM_043260901.1 | mRNA | downstream | 54634 | 7928529 ~ 7951084 (-) | True | cables1 |
| XM_043260585.1 | mRNA | upstream | 14390 | 8067575 ~ 8074304 (-) | True | LOC122360189 |
| XM_043260586.1 | mRNA | upstream | 15815 | 8069000 ~ 8072880 (-) | False | LOC122360189 |
| XM_043260483.1 | mRNA | upstream | 29721 | 8082906 ~ 8092455 (-) | False | mkxb |
| XM_043260482.1 | mRNA | upstream | 29721 | 8082906 ~ 8092455 (-) | True | mkxb |
| XM_043260404.1 | mRNA | upstream | 52041 | 8105226 ~ 8143954 (-) | True | mpp7b |
| TU163187 | other | downstream | 175001 | 7828820 ~ 7830717 (-) | False | LOC122360680 |
| TU163145 | other | downstream | 387133 | 7610629 ~ 7618585 (-) | False | cdkal1 |
| TU163147 | other | downstream | 387133 | 7610834 ~ 7618585 (-) | False | cdkal1 |
| TU163032 | other | downstream | 804337 | 7195490 ~ 7201381 (-) | True | LOC122360222 |
| TU163014 | other | downstream | 922194 | 7081962 ~ 7083524 (-) | True | G110303 |
| TU163302 | other | upstream | 37466 | 8090651 ~ 8092353 (-) | False | mkxb |
| TU163327 | other | upstream | 162844 | 8216029 ~ 8216595 (-) | True | G110544 |
| TU163340 | other | upstream | 245604 | 8298789 ~ 8302245 (-) | True | G110554 |
| TU163343 | other | upstream | 259080 | 8312265 ~ 8316685 (-) | True | G110556 |
| TU163623 | other | upstream | 580165 | 8633350 ~ 8636222 (-) | True | wu:fj39g12 |
