RNA id: XM_043260681.1


Basic Information

Item Value
RNA id XM_043260681.1
length 5139
RNA type mRNA
GC content 0.48
exon number 5
gene id erfl3
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14060753 ~ 14103280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGCCGTTACCCTATCCGACCTTTACCAGCCTCAGCCTAACCTGACCCCTCCTGACCCCACTTCACCCGTCCTCACCCTGAGTGACTGGACACCCTCCATCCTCTCTGCAGCCCTTTCAAATCACTTCTTGATTCTAGAGTATGCCAATCGCATCAGATTGTGTGTTAGATTGAGAGTGAGGATGCTGGTGAATCTCAACTCAGACCTCAAGggtTTGCGTTCCCAGACTGGGCCTATAAGCCCGAGTCCAGTCCTGGCTCCAGACAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCTGAGGAAGGAGGAGTATCATGATGTGATTGCCTGGCAGGGAGATTACGGGGAGTTTGTGATCAAAGACCCTGATGAGGTGGCCAGGCTGTGGGGCGCCCGCAAGTGCAAACCTCAGATGAACTACGACAAACTCAGCAGAGCTCTCAGGTATTATTACAACAAGAGGATTCTACATAAAACTAAAGGAAAACGCTTCACCTACAAGTTCAATTTCAACAAGCTGGTCCTGGTCAACTACCCTTTCATTGACATGGGGTCTGCAGGAGCGCCTGTTCCTCAAAGTGCTCCACCAGTGCCTACAGGTCCCCATTTCCGTTTCCCTCCATCCACTCCATCGGACATGCAGGTGTCCGAGGTGCTGCGCTCGCCCAGCAGCGAGGAGCTGCGCAGTCCGGGGATGTTCAGCGGCCGCCGCATCGCCCGTGGCTCCGTCTCCGACTGCAGCGATGGGACTTCTGTCAACTCTGAGATCGAAGACGGGAACGGAGGCACGGCCGAGGAGAGAGTGACAGAAAGAGTGGCTgagagaggaggaggtggaggtggaggtggtTTCCGAGGGGCCGTTCACCCTCGTCTGTCTCACGAGGCGATGTTCAGGATGTACGGTGGACCAGGAGGTCACAGAGGTCATCGGGTGTCAGAGGTTGGCGGGCACAGGGTTCATCCTGAGCCTCTCTCGCCGTTCACCGTGTCGCCTCTGCCCGGTCCCGGAGGCCCAGGCTTGTTGGCTCCACCTCTCTCGCCAGCGCTCTCCATGACCCCAGGCTCTCACCTGGCCTACACACCCTCCCCTACCCTGTCGCCCATGCCTGGCTCCATCTTCTCCTTCAACCCAGAGGACATGCAGCGCTACCTGCAGGCTCACACCCAGAGCGTCTACAATTACCACCTGAGCCCTCGTGCCTTCTTTCATTACCCAAACATCATCGTTCCTCAGCCTCAGCGGCCCGACAAGGGCATGCCCGGACCCCAGGGCTGCGATCGCGGTCCTGCCGAGAGGCCCTCTGTGCTCAACAGCCATCACTCCAGCCTCCCGCCTCCTCATGCTCACCCTATTCACCATCACCTGGGGGAGGAGCAGCACCACTCGCCATTCAAGTTCAAGCTCCAGCCTCCCCCGCTGGGCCGAAAACAGCGTGACAGTCAGGGTCGACAGGGCTCGCTGTCCTCCTCATCTACATCCGGTCTGGGCTCCTCGCTGTCGTTTGGGAGTGACCTCAGTTCAGCCAGTGGATCAGGACTGGTGTCCAACTCCTCCTCAACTGGCTCGCTAAACAGCGCTGGGCTGCCCAAGATTAAGgTCGAGCCTATATCTGACATTGAGTCAGAAGAGGAAGTCGAAGTAACTGACATCAGCGATGAAGAAGCTGATGAAAGAGATGAAGAGTTTGACGTTTTCCCCTCTCACTACCATAAACACCGTCATCATcagcagcatcatcatcatcatcatcgtcatcaccATAATCATTACCCTCACAACCAAAAGCACCAACAGCCCAACGGCACAGATGCCGCTCTCCACCCAGATGAGGACTTGGAGGAGGAGGTGTTCAAAGCCCCCGCCCCTCCACCCTTCTTCCTCCCTCCCACCTCTTCCTCGGGTGATAGCCGGCGCGGTACCACCGTTGTAAAGAGCGAACCCGTGGAGCCGGCGGACATACAGCTGCCCTCCGGTGGCCCGCCGCAACCCAACTCCCAGTGCATCCCACTGAAGCTCCGCTTTAAGCGGCGCTGGGACCAGGACCAGCACATGGAAGAAGCGGAGGACAAGAAAgtgagaggagaagagagggggagagagaggaaCGGGATGGCGGAGGAGAGCAGCAGCGGAAGCGGGAGCGGGAGCGGAGAGGCAGAGAGCCCGCCTCCTCTCGCTCATCACAGAGTTAGTGCCGAGCTCCACCGAGCCACGGCACAGCTGTCACTGGAGAACAAGGAGTGCTGATACGCATCGACACACACAGACGACTGCTGATACACAACTCTACAACTGCTGATGGACCCACACTCGCACGGGACTCTTCTTAGATCAATGACTGCTGATACAGACAACAGTAATACTGACACATACACTGCACACTTAGACTAACTGACCCTTGCTTAATCGAATCCCGTTCCCCAGGCTACCCTCAGGAGTCAAGAACTTTGACCTTTGGCACTagagaatattttatatttttagaaaagaattttattttgcaaagtgCCTGTGAGCTGTCCCTCAGAAACCCTCGAAGAGAACTTAGAGACGGGCCTCAGAAAGACCGGTCTGGTTCGAGGGACCTGATCTTCTCCTCCAGCAGCCCAGCATTATTTTCCTCAGCGACAGACTGTGATCAGTCTCCATGTGATGTGGTGGGATACAGATGCACAGAAAGTCACAAACAGACACTGTTCTAAAACCAGCCTGGTCAGACGTCCGAACCCTCAGGGACAAAAtccctcaacacacacacacacacacacacacacacacactcgcgcacacagACATGATCCCGTTCTTATTCCCTGTATGAAATGTTTGTCTGATTCGAGAttgattgtttgtgtgtgtgtgtgtgtgtttcagaaatCTAGCTGTGTGTAAGTTCTCAGGATATCTCCCTCCTTTCCTTTTCTATCCAAACCAGCTCACCTTAAAACTCTTgctatctctttttttcccctctgggACCATTCCTGAATCACTTTTATTCCGTTAGGGACGAAATGACTCGGGCATAACATGCGGTTCAGAGACCATGCTCCTAAATCTCTTAAACGGCTAGTTGCTTAGTTGGTTAGTCTTTAAAATGACGATTTGAAGGTAATACACATTAGGGAACTTATAACAAGCTTCCCTTGTATAGTCAGTCTTTTAGCGTGAACTAAaccagcatcacacacacacacacacacacacacacactcacaagctTGTACAGTGATACTAGACTCAATTCTTAACTATTTTGGCACTTGATGATGTACCCTTTAGAACCAAGTGCTGATTCTTTGTCCTGATTAACTGTTCTTCAGCCATAAAGAACATCCGCAGACTCCTGGGAGGGGTTTCGATAGCAGTTTCAATCCATAATACCAGAATTGAAATACTAACTTAAGTATAGAAAGACAGTAGAAGGCATGTTGCCAGAAGttgcactcacaaacacacacacacacacacacacacactgcctctATTGCCTTGTTTTAATAGCATGTCTGAAAAGGAAatacaaaaatcttaaaaacagtATACACTCAATATACCTTTATATATTATGCGTTACACATACTATAAACGGAAAGCATAGCATTAACAGATGTATCAGTTTGAGGGGGTTTTGTAACAGATTTAGTTTTGAGGGGAAGGTTGACTCTTCTCCTCAGGGATAATGTGGCTATTCGGGTAAGGGAGCCTTTTCTTATCAAGTTGATAAAAGGTGGGGTAGATGAGCAAAAGACTAAATTGTACCCAAGACTCTAACAAAGCGAGCACGAGAGCTTTGCACCACAGATGATGTGGCACATTCGGTTCTTTAACCAGCACGCACCTCGTCAACATCCTGTTCCTACTGCCAcaactgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgacagaggCTGCAGGTCTCTGTGCATGTATGTCATACCACACCCAAggctgtaattattttaaaatcttgcatCATGAACCTCATAAACCTGTGTGCACTAAAGCCCTGTGGACGTTGAGCACAGGACTTGAGACATCAGCGGGGTGGCCAGTCGGACACTAGCCATGATATAATGGTTTTCCAGTGACAGGAAGGAGTTATGTCATGGCTGAGGTGTCTCTAATACCTAAGATAATGCATAAGACAAAATTGAACTGGTGACGGTGTCACCTCCTCAAGGTTTTGAACTCTTTTAGCTGCCTTATTCCCACTTTAATCAGATTTGATTATGTTTAAGATCTCCTCGAGTCTTTAACTGGGGTGCACTTGTTTTTACGCCCGGGCATACCTCgaaattgaaaacatttgagATGGGGTGAACAGTATTGACCTGCGTGGTCTGTAAACATTAGTTTGGGCACAAAGTGAGTGCATCGTTTCTCTTTAGGAGGGACGTTATTTGTTTTCTCTTAGGCTGCTCTCGTTGGTTATCCCAGGATGTCACTTTTTcgagttttattttgtttatcacCCGAACTGCTCATGTTGATCTGCTCTCTGATGTCAATGTTGCTGTTCatcctaattattattattagttattatcattattttgttgACATTTTCTCCTCATGTTGTAGTCATGATAACATTGTATACAATACTGTAAGAGATCCTTTTACGAATGTTTCCCCCAGCCCTGCCTTCCCGCGAGCAACCCGACAGTGTGTTtagtgtaacattttaaaatttttgtaaattaacgTAAACCTGTAACTTTAATATAGCTGGTTATTGTGGAGAGATATAGGATGGAGGAAGGGCATTCAGGGGAGGATCAGGCTTTTGATTTGAACTCAAGTCATGTCATGTAATTGTTATTTTGTAGTGTTACTGATTTCTTGCTCTTGTAAATTTTTTTCATCGGGGGATTGTATgattttaaaagatatattgtgtattgttttattgtgtaaaagtctctatctctctcactttctttctcaaaatttatttctgtggttccataattcataataacagGTTTTAATACCatgatgtaacattttaattccttctttattcatttttgtgttctttttcagaattgtaattaaaatgtaatcaggGTCAATTAAACTGGTTAAAAGCCA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165979 lncRNA downstream 151017 13909324 ~ 13909736 (-) True G112449
TU165978 lncRNA downstream 159140 13901137 ~ 13901613 (-) True G112448
TU165977 lncRNA downstream 159677 13900864 ~ 13901076 (-) True G112447
TU165937 lncRNA downstream 274300 13785015 ~ 13786453 (-) True G112426
XR_006252773.1 lncRNA downstream 279171 13780620 ~ 13781582 (-) False LOC122360145
TU166006 lncRNA upstream 31682 14110148 ~ 14110462 (-) True G112464
TU166021 lncRNA upstream 129930 14208396 ~ 14210533 (-) True G112473
TU166022 lncRNA upstream 132227 14210693 ~ 14210939 (-) True G112474
TU166033 lncRNA upstream 214273 14292739 ~ 14296572 (-) True G112479
TU166037 lncRNA upstream 224658 14303124 ~ 14303535 (-) True G112483
XM_043261355.1 mRNA downstream 2564 14020963 ~ 14058189 (-) False cicb
XM_043261354.1 mRNA downstream 2564 14020963 ~ 14058189 (-) True cicb
XM_043261392.1 mRNA downstream 49083 13998237 ~ 14011670 (-) True gsk3ab
XM_043261428.1 mRNA downstream 64481 13977757 ~ 13996272 (-) True znf574
XM_043261945.1 mRNA downstream 89527 13910503 ~ 13971226 (-) True grik5
XM_043261841.1 mRNA upstream 38071 14116537 ~ 14152861 (-) False pou2f2a
XM_043261837.1 mRNA upstream 38071 14116537 ~ 14152861 (-) True pou2f2a
XM_043261842.1 mRNA upstream 38071 14116537 ~ 14152860 (-) False pou2f2a
XM_043261839.1 mRNA upstream 38071 14116537 ~ 14152860 (-) False pou2f2a
XM_043261846.1 mRNA upstream 38071 14116537 ~ 14152859 (-) False pou2f2a
TU165859 other downstream 376844 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 2648976 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2774321 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 3177542 10861951 ~ 10883211 (-) False LOC122360812
TU166030 other upstream 156088 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 830859 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1390014 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1390014 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1390014 15468480 ~ 15495722 (-) False rps19

Expression Profile