RNA id: XM_043260687.1


Basic Information

Item Value
RNA id XM_043260687.1
length 3345
RNA type mRNA
GC content 0.42
exon number 6
gene id si:ch73-341k19.1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1648367 ~ 1654527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTGACGTACTGAGGAAAATAGGAAAGGAAGGGTAAAAGAAAGTTGAAGTGAACGCGGCGGTTGTTGAATTCAAAAAGGGTCTCAGTGAACGACTAAAGTGAACGAGAGCGTTTCAGTCACGTACAGAGTCGTTAAACTACAAATTCGTTTGATTTAATCAGAAAAAGGGAGACACAAGGACACAGATAGCATGCCGATGATGATCGTGAGGAGGCTGTTTTTGTTACGTTTACGTTATACTTTGTTAGCTGCCTGGTTACTTGCCTTAATGTCGTGaaatataattctaataatttgcGTTAACTAGCTGTTTAGCCCACGTACATATTTGTCTTTTTAGCCGTCGTGACAACGATAGGTGTCACATTGTAATTGTGTTTAAAACTGTAGCTCTTGAGTCCCAACCTAGTTCGCTAGATTAGATTTACATGCAGGCCAAAGAATAAAATTACAAGCGATACaagtttaatatgtttttttccccatacattatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcaagtGCAACAGTATgtatgtcaaaaataaatcagtcaGAACAGCTTACTCATAAATAAGTCAGGCATGTTTAGAACAATAATCGATAGATGACATTAAAAAGGATCACAGTGCAACCTCAAAATACAAATGAACCCATTTTAAATCTTGGCCACAGTCCTTCAAACCACTAGTTTTTATCCATTAGTCAGCAATACGCTTTTAActattcaaaatacagtaatagaACAAATGTTGTATGATGAGTATTCATACCAATAATTACAGGTCAGAATATGCTGGTTGTTTTATTACAGGCCGTATCTGTCAtgatgcagtgtttttttcatcTATGTTTTAAGCTAACATTTCCACAAAAGTTATTTGAagcattaaagtaataattaaagacatcacgcatacatatattatgtaaacaattttttttatttggtatgaagttatttttatttttattgtaatcgTTTGAAAgcacatatataaaacatgtatatatgtattgaaGAGAATGCATTTTGGACTGACActttgtatacatatataagatatttcagatttaaagtTATAGACATTTTCTCCTGAATGTAACTGATATAGTTCTTGTCTATTAAGCACATTACAATCAAGCAGAAAGGACAAGAGCCTCGACCGCGACGCTGCCATGCAGACGCTACTTTATTCACATGCCCTTTCTGCACAACTGACGTATGCAAACCAAGACAGTACCATCAAATAATGACCCATATAGCTGGGCATAAACTGAGAGCGGTTGAATACGCAGGTCATATACAGCTGTAACATTGGCTGTGATAAAAAGGCCAGACATTTTCACTGCTGCCAGTGCCCCAAAATTTACATGAATAAAGACGCCATAAAAAAGCATCTTTGCAGCGCTCATCCAATAGCTACCCGCGCTCCAGAACCACAACCTGTAAGTCACACGCTACGAGAACCTCCTTCACAGCGAGCAGAATCTCATCCACCTCCAGAAACTCCTTCACAGCAACAAGCAGCACCTCCAACAGCTGAGAGAGAGCGGGTCTCTTCGGTTCAGTGTCACACTAGGCACATTACAATCAAGCAGAAAGGACAAGAGCCTCGACCGCGACGCTGCCATGCAGACGCTACTTTATTCACATGCCCTTTCTGCACAACTGACGTATGCAAACCAAGACAGTACCATCAAATAATGACCCATATAGCTGGGCATAAACTGAGAGCGGTTGAATACGCAGATTTTGTCATATACAGCTGTAACATTTGCTGTGGAAAAAAGGCCAGACATTTTCACTGCTGCCAGTGCCCCAAGACTTTCATCAATAAAGGTGCCATAAAAAAGCATCTTTGCAGCGCTCATCCAATAGCTACCTGCGCTCCAGAACCACAACCTGTAAGTCACCCGCTACGAGAACCTCCTTCACGGCAGCAACCAGCGTCTCAAAAACAAGACCTCGATTTGCAGCAAGCGGAACCAGATCCACAAGAATTAGCAGCTTCTTCAGCGATTGAGAATAAGGACATCTCTGTTCAGGTTCCACGTGGGCACATCACAGTTAAGCAGAAAGGGCAAACGCCTCAACCACAACTCTGCCATGCAGACGCTACTTTATACACATGCCCTTTCTGCACAACTGATGTATGTAAGCCAAGACAGTACCATCAAATCATGACCCATATAGCTGGGCATAAACTGAGAGCCGTTGAATATGGAGattatgtTATATACAGCTGTAACATTGGCTGTGGTAAAAAGGCCAGACATTTTCACTGCTGCAAGTGTCCCAAAACGTACTTTCATAAACGCGACCTAAAAAGGCATCTCTGCGCCGCTCATCCCATAACTCCTCCAGAAACACCTTCCGTACAGCAACCAGCACCCGGTCCGCTGGAATTACCAGCTCCTCCAGTGACGGTGAAAAGCAGGAAAATCTCAGTGCAGTGTCGTCACTGCGGGCTCAGTCTTAATTCCAaaaatttaaagaaacacattgAGAGAAGGCACCGCGAAGGCGCGCACCCCGTCACTTCAGTTCTACCAGCGCAGTGTGTCGATAAAAAGAATggaatatttgttgttttggaaTCATTTTCTGAGCCCTGCGCCCCCATCCATGTGGTCAAAAGATTCTGGGGTTCATCCCACAAGGTTAAGTGTGAAATGGATAATTGCAACAGTCGTGTTGACGTGGCACAAAGAAGTGGATTATTGGTTACGCAGTGTATGCATTTAACCTCAGTAGACTGCACCGGTGCCGTCGCACCGAGCCAGGATTTATCAGAGCGTTTGTTGACTGAGATGGTGGAGCGAAAATGGATCGGACGGATAAGGAAAAACCAATGCCTTAAGCTGCAAAATCAAGCTAAGCTCAAAGGTGCCACATTTACTAGCCTTGTTACCATTGGAGGCCCTGattacatgcattatatatcaatatatgaGCCAAAGTTGTCAAGTTACAGTAAATTGGGCAGAGTCTTGGTGGATTACGACGCCAAGACAAACACTTGGAACTGCCCTTGTGGCAAAGGGGGAAAACCATGCCTGCACAAGAGTATCGGAAAGTGGTGTCTCTATCAAATGAAGAAGCAGCTCTTCAAAAACCTGCTTGAATCGGAGGAAGGAACCGAATCGGTGCAAAATGAGAATCTGTCTAGCCAACAATTGCTGTCCAGCGACTGGTTGGGATAACGTACTGCCACTTTAAATCTGTGGTTCCACCGATCAGTTAACAAAGACAGCGTGAATGTAAAAGGaagaacattattaaattattggcGATTATTAACGTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 2218 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 2218 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 4194 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 5324 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 7055 1640777 ~ 1641312 (-) True G109440
TU161743 lncRNA upstream 81661 1736188 ~ 1997189 (-) False G109460
TU161742 lncRNA upstream 81760 1736287 ~ 1997307 (-) True G109460
TU161744 lncRNA upstream 81760 1736287 ~ 1997189 (-) False G109460
TU161747 lncRNA upstream 86593 1741120 ~ 1964161 (-) False prdm1a
TU161750 lncRNA upstream 162735 1817262 ~ 2078943 (-) True G109465
XM_043260624.1 mRNA downstream 98436 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA downstream 98544 1545287 ~ 1549823 (-) True pmvk
XM_043260038.1 mRNA downstream 137933 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA downstream 139056 1496586 ~ 1509311 (-) False LOC122359849
XM_043261994.1 mRNA downstream 356054 1282311 ~ 1292313 (-) True LOC122361052
XM_043261004.1 mRNA upstream 2021 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA upstream 2021 1656548 ~ 1659893 (-) False nt5c3a
XM_043260251.1 mRNA upstream 30377 1684904 ~ 1704721 (-) True foxo6a
XM_043261290.1 mRNA upstream 63508 1718035 ~ 1720115 (-) True med18
XM_043260182.1 mRNA upstream 86701 1741228 ~ 1750972 (-) True prdm1a
TU161510 other downstream 765615 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1015470 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1353382 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1369893 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1370288 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1473534 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2440230 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3577684 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3581119 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3704983 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile