RNA id: XM_043260691.1


Basic Information

Item Value
RNA id XM_043260691.1
length 4903
RNA type mRNA
GC content 0.45
exon number 12
gene id stk40
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25053698 ~ 25071225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGTCAGGTGGTGCTGCTATGGAAAGATGTGATCAGTTGTCCTAAGAAGGCTTTTCCCTCAAAACCCCTATCGGTAAACGTGAAATATCTCCAGTTCGCTTGAAACAAACCGCGTCGTGGTGGAGTGTAAATGTCGGTGCACCCCTGCTGAACATTTAATCGGCCAGAAATGAGTGGGAATTAGTGTACGACAGAGGATTCCCTCGGCGGTTTTGAAAAACGTCATGTTTGAAACAACACAACTAATGACAGTTTTCTGTTTACTGATGTGGGCTTCCTGAGAATTCCGTTCAGCAGCTCTGGATTGGAATCAAGATTatCTGCAGAATGTCTAAACGGCGTGCTTCGGAACGAGGGGCCGGAGAGTCATCCGGCAGACCCAGCAAGCTCCTTTGTCCTGGGATATCTGGCAACAATGCTAAGAGAGCCGGTCCCTTTGTTTTAGGCCCACGGCTGGGAAACTCTCCCGTCCAGAGTATAGTGCAGTGTCTAGCCAGAAAGGATGGGACGGACGATTTCTACCAGCTAAAAATTCTCACCCTGGAAGAACGTGGAGACACAGCAGGAGAGACACAGGAAGAGAGACAAGGGAAAATGCTCCTGCATACAGAGTATTCTTTACTGTCACTGCTCTCCAACCAAGAAGGAGTGGTGCACCATCACGGCCTCTTCCAGGACCGCTCCTGTGAGATTGTCGAGGACATGGAGGCCAACAAAGTGAGGAAGATGAAGAGACGAATCTGTCTAGTGCTTGACTGCCTCTGTGCCCACGACTTCAGCGACAAGACGGCCGACCTAATCAACTTGCAGCATTATGTCATCAAAGAGAAGCGACTGAGCGAGCGCGAGGCCATCGTTATTTTCTATGATGTGGTGAGAGTGGTGGAGGCATTGCATAAGAAGAACATCGTGCATAGAGACTTGAAGCTTGGAAACATGGTGCTTAATAAAAGGACCCATCGGATCACCATCACAAACTTTTGCCTTGGCAAGCATTTGGTGAGTGAGGAAGATCTGTTAAAGGACCAGCGAGGCAGTCCAGCCTACATCAGCCCAGATGTCCTGAGCGGTCGACCATACCGCGGCAAACCCAGTGATATGTGGGCACTCGGTGTGGTGCTGTTCACAATGCTCTATGGCCAGTTCCCATTCTACGACAGTATACCTCAAGAGCTCTTCCGCAAGATCAAAGCAGCAGAGTACTCCATCCCTGAAGATGGGCGTGTTTCAGAAAGTACAGTGTGTTTGATCAGGAAGCTTCTGGTGCTTGACCCCCAGCAGAGGCTCACTGCCACCGAGGTGCTCGAGTCGCTGAGCGCCATCATCGCTTCCTGgcaATCTGTGTCGTCACTGAGCGGCCCTCTACAAGTGGTGCCAGACATAGACGATCAGCTTAACCACCCCGAACATCTTCAGGAGGCAAAAGTGACAGAGGAGTCATCTCAGTACGAATTTGAGAACTACATGAGGCAACAGCTTTTGTTGgcagaagagaaaaacactATTCATGAGACCAAAAACTTCCTCAGCAAGAGGCACTTCGGTAATGTGCCTCCGGTGAGGCGCCTCGGCCACGATGCTCAACCCATAAGCCCTCTGGATGCCGCAATACTGGCCCAGCGCTTCCTCCGAAAGTAGCGCTGTCATTCTGTCCGCAAGCAGGGGTCACCAGGAGTGGAGCAAGCCACGGAACTGGGCGCTCTCTTTTATGTACATTtgcgtgtgagagtgtatgtgtatgtgtgtgtgagcatgcaGCGTGAGTCTGGCAGACGCAAACATGGGCCAAGGAACAGCTCAGCGCTCCGTTGCTCCATTCATCGGCCCAGAACACAGACTCTGAAACCAGGTCTGATGAGACTCTGACCACCACCTCCACCATGCCAATCCTTGCCCaaatctgacacacacacacatacacacgcacacacattttcagcaaTACCCCAACAGAATCATGTAGCAGATCACACACAACCACCCTTTTTCCATCCGCCTCTCCCCCAGCACTTTCTACAGGAACGCCTCGGATCACATGATCAACCCTTTTGTTCTGTTCCCCTCAACCAGTTTGTCTGTTCTTCTCCCATCTGTATCTATGACTGCAAATCTACCtcttaccatttttttttctatctctcTATTTCCTCCTTTCTTAGTCGGTTTTTAACAACGCTCTCCGTTCTTATGAAAGCAGGACTCATTATGTTGAGGGGAGACAAGCACAGGCTCAAGAGCATTAGCATTGTGGTTGTGTAACTATTCTGTGTCAAAACCAGTGATTGGTTTTTCCTTACAATCTAAATAAGCTCCCCCCTCTCCTCTCTTACTAAAACGGTAGCATTTTAAGTAAggttattctttttatttccattgAAGATGTTAAGTTTTACAAGTTAGAAAGCTAAAAACCTCATATTACTGAAATCATAGCAGCACGTATTTCTCCTCCTCTATTTGAATGGGTTTCTGTTGGCAGCTAGCATCTGTGTCTGGATGCATACAACCAAAAGCATAACTTGTCATCCAAACCGGATGATATGGTACGTTATTCTCCCCTATTGCTTTCGTCCAATCAGAAGGCAGCAGAAAGTGCAAGGCCGCCACTTCCCGTGCATTCGACCAAACGGAAATGTACTTTTAATCATGTGATGTGCCACTACAGAGGACTCTCGAGAGCTGAGCTAGGTGGTACTTTTGTGCATTCGGCTGTGTGTCACACAGGGACTCATTGCGGGACTGTGCTTGGAAAAAGACGAGGTACGGGACAGCTGGTGATGGGATGAAACTGTCAGGAAGCAGGGCGGCTGAGCCGGCAGTCATGCGGAAGTCTAAGCCAAGATAAGCCCCGTAAGCACAGCCCTTAAGCCCTCCTTTCCTTTTGTGTCCCTCCGTCTAGAGCGCTCGCCCTCTGATAGCATGCCAAGCCATCAAAGTGCATCTTCTGCCATGTCCTGTATCTCCGGTGCTTTTGTTCCCCACACAGATTTCAGCTGCAGCTCAGGGATCGAGGATTGGCCGCTAGGGAACGTTTCTGGCCACAGTGATACAAAGAAACCCATTTCTTAGGggattgtttctttttgtttttcttattctcTTACCTACCGCTCATTTCCACGTATGGTTAACTACTTCACGATCATCAGGAAGGAAATGCCATGAAACCCACTCCTCTCCATCTGTTTCTTGTGTGAGAATATTGCAAGGAAACAGATTCTTAATGTCATTCGACTTTTTTCAGTCCCGTTTTAAGCTAGCCCATGTGTATAAAGCATAACTGTGGGATATCTTGCCTTAGATTATCAACAGATTCTCAACTCAACCGTGAGCAGTGAATATGTACTTTTGATGCTAGAATATATCTTAGTATACTAGGCGGTTGGCTTGCATCGACCTGTGGACCTGTGGCTTAGTTTGCAATGCCTTTATGTCTGGCTCCACTCATGTCATTTAGATGAAAAGGTCATTCAGTACTGTAGATCTCTGAGCTCATGACTAGCAGCTTGGCTTGTCCTTTTAATCTCCACTTTGATTTCCTCTTTTGAAGACGTACAGCCTGGTAGTATATCCGTACCTTTtagttttccttttaatttatttgctgtttttaattcatCTGCCATGGTAAATGTAGAGATCATGTATCACTCAAAAGCATTGCTGTGATCtctcacgtttttttttttccttctatcTTCAGtgaaggttttgttttattgtctctttccctcttttttttttttttttatattcttgaaTAATTATTGCAACAATCCTGTCGGTATATTAAGCTACACTAATTAGGTGACTGACTTTGCATAGCTCTATTTTAAGTAAACTAAATTATCGTGCACATTAGCATGACATGTAGAATCGGTGTAGAGTTTATCTTGCAAGATAGAATGATACTGCACTCTGGCCAGTGTGAAAGACATCGTAATGGCGGATAGGCATCAATAGTGCAAAACCCAGTGCGgggtattattattttaaagaatcgCACCAATCTTTCCACACAAGCCACCATCGAAAGCATTAGTTTTTCCCACCTCAATGTGAATATATTTGGTTGTAAAGCAGTATTGTAGTGGATAATATGCGTGATTTGATGGAGAGGGACTTTTTGTGAGCAAATCAAAGTCTTTCCCTTGTATTCAAAAAGGAGTGCCTCAAGGCTATATCCTAGGTCCACGTAGAGTTCTCACAAAAGCCATTATATCATAGCAAATTTGTACAGTTGCAATATGGCTGCTGTTGATGTGGTTGTGTAGTCTGTACCCAAAACCTAGATCAAAGAAATtagtaaatatgtttaatatgcCCCCCCTGCACAAGTGACTGCAAACCCCCCGGTCTCCATTGCATAGACAGTTTCGTGACGTCCAAAATTCTGTCTGCAGCATGAGAAGTgtacgttttttgttttttttttgagctctgTATACAATTTCAAAGCAATTAGTGCATGATTCTAATTAGCAAGACGTGCCAGAAGATGCAGCAGAAATTGGAGTGGATGTGGGTGTTTTGCAAATGATGAATACTTAAAGATTGCAAGGGAAGATACTGAACATTTAAGTTTAActtagattttcttttctttttaggcCACTTTGTGCAGATGTTTCATAATTTGGGAGATCTCTCTTTAGAATTGTTAcctttttttgcatcttttattaaaactggaaaatataaatctggtgtaaaacaaaacacaatgaaaCTGGTCAAAAGCCTGAACGTTTGATGTCGTAAGCTGCTCGGTTAGAATggtgtcaaagaaaaaaaaaactgggtaATTGTacagagatgaaaaacaaatttgtatAAAAGACATATTTTTGTACTTCATCAAATCTCTACATGCATGTCAGCAATAAACTTTGATATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171502 lncRNA downstream 218334 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 219740 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 230288 24821501 ~ 24823410 (-) True G116174
TU171248 lncRNA downstream 580333 24414226 ~ 24473365 (-) False serinc2l
TU171572 lncRNA upstream 8883 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 107068 25177452 ~ 25178607 (-) True G116242
TU171609 lncRNA upstream 141009 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 141009 25211393 ~ 25557473 (-) False G116237
XR_006252863.1 lncRNA upstream 594335 25664719 ~ 25702534 (-) False LOC122361130
XM_043260010.1 mRNA downstream 20357 25020716 ~ 25033341 (-) False eva1ba
XM_043260009.1 mRNA downstream 20357 25020716 ~ 25033341 (-) True eva1ba
XM_043260493.1 mRNA downstream 147186 24892846 ~ 24906512 (-) False LOC122360137
XM_043261047.1 mRNA upstream 2495 25072879 ~ 25080305 (-) False oscp1b
XM_043261049.1 mRNA upstream 2495 25072879 ~ 25080305 (-) True oscp1b
XM_043261051.1 mRNA upstream 10073 25080457 ~ 25082777 (-) True LOC122360438
XM_043261050.1 mRNA upstream 12529 25082913 ~ 25089706 (-) True mrps15
XM_043261776.1 mRNA upstream 37014 25107398 ~ 25118453 (-) True capn7
TU171232 other downstream 725725 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1378400 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1443857 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1529316 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2119731 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 597435 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1309288 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1736736 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1739933 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1739933 26810317 ~ 26812909 (-) False G116632

Expression Profile