RNA id: XM_043260701.1


Basic Information

Item Value
RNA id XM_043260701.1
length 3850
RNA type mRNA
GC content 0.43
exon number 16
gene id csf3r
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3729142 ~ 3743612 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGTTCAGGATGGTAAGAAAGAAATGGCACGGAAGGACTGACAGCAGTGTCTCCTTCTCAGAACAGCAGCTGgattttatttcacagaaaagCAGACCTCGCTGGGCAGTAAAATACACAGACGTTTAAATGTGAAACAGAGAACCTTCAGATGCAGAACACGTCAAAttgtGATAACCATGGCATCCATCTGGATTGTGCTTGTGCTGTGGATATTTGTTAATTCCTTGATAAAAGTGATTCAAGCATCATCGTGTGCTACGATTCACACTCCTGCCACACTGGTGCTCGCTGGATCACCCGTGTCAGTGTCCTGCTCCATCGACGATGACTGCCCGCTGACCAAAGGAAAAAACTTTCATGTGGCGTGGAAAATTAACAAGCATTTTCTACCCAGCAATCTCTCCTATCAGGAGAGCAACAGGACGTATGGGGTAATCATCCCTAGTCTACCAGAACCGGACACATTCATCACTTGTGCTGTGTGTGAAGAGGAGAACTGCCTTATTGTCAACGGAGTGCAAGTGAAAACAGGATatCTTCCATCCGTTCCTAAAAACCTAAGCTGCTCTTTGAATGTAACATCCAACGAAAGATTACTGTGTCAGTGGGATCCTGGTCAGACAAATCTTCCTACAAACTATACGCTTCGCATATTTGGGGTCGCGTCAAAAAAGGTTACATCTAAGAAATATTTCATTCCATCTAAAGCACATTTCTTCTTGATTCCACGGGGATCTTATGCTTTATTATCAGAGGTGGAGATAAATGTGACAGCAGTGAATGTCTTAGGAAACTCCACCTCTGAAACCCTGAGGCTGATACCAATGGAAACAgCAATATTCGACCCTCCTGAGATAACCAGGATTGAAGAAGATGTGCCGGGCTGCTTAAATTATAGTTGGATTCTTGCAAAAGCTCAGCAATGGTTGACGACTGCCATCAGTTTAGAGTTCAGACTGAAAACAGTAAATGGCCAGCAAGACAAAGAGATGGTTTTGCCCTTCACGAAAAAACATGGAagcaaaattaatgtttgtgaCCTTTTTCACGGGACAAATTACAGCGCCACAGTGCGAGTGACGTATAATTCATCGAGTAAATGGAGTAAATGGAGTAAATGGAGTGATCCGAAAACAGCCACCACAGTTATGCAGGctccaACTGGCGGCCTGGAAACATGGCTTAAAGTGTATAATCAGAGTGCAGAGCTATACTGGAAGCCCTTAGAAAATTTTCGTGCCAACGGCTGGAATTTGTTCTACACTGTCGAatcaaagaaaccaaaaaagaCTTTGTGTATTACACAAGAAAGCCACTGCTTTTTCAGTCTCATCGATGAGGCCGACAAGATTTACCTGAGAGTTACTAATGCAGCAGGGAGCTTGGGTCATCTAGAAGTACCAGTGTATCGGAACAAAGGACTGGGCGCTGTCTCTAATTTCAGTGTTCACCCCGAGTCAGACACATCTGTGCTGATCATGTGGGGGGGAACACCGGCGTCCCTCAGTGTCACAGGATACGTGCTTGAGTGGAGATCTTTACTTGAGAAGGCAGCCCTGTCCTTCACTGTGATGGACAAAAACATCTCAAGTACTGTAATAACAGGGTTGAGTCCTTACGAACCCTATGAGATGTCTATTTATCCCAAATATGATAAAGGGATTGGAAGTCCACACACATTAGTGGCATACAGCAGACAGAAAGCACCAGAGTCGGCCCCAAAGTTGAAAGTGGTTTTCATTAATTCGTTTGTCAAACTACACTGGGATGAAATCCTCCTTAAAGACAGAAATGGAATCATTCGAGGATATACCGTTTacatttggaatgacatgaagaataTTAAAGTTATAAAGACTGAAGAGACCAGCATTGTGTTGAAAGATCTGCAACCGGTGACTAATTATGAAGCCCTTTTGACAGTTCATACGATGGGAGGAAGTTTTAATGGATCGGTTGTGCCCCTAGTAACTGGACATATtggtggAATTGAAATGGTCTTGTTTGTTATCCCAGCGTGCATTGGGTTATCGCTTCTCGTCATCATTGTTGTGTTCGcctattttggaaaaaatgaacGggtgaaaatgtgtttgtggcCCATAATTCCCGATCCTGCCAACAGCAGCATTAAGAGGTGGACCACCGCTGATTCAATGCAGGGCATGCCTTCCTTTAAAGAAGACAAGGAGCCCGTGCTGGTGTATCTGTCCCACTTCAGTCTTCTCGATCTGGACGAGAAAGAGCCGTTCAAGAGCGACTATGTCAAGGAGAACCAGTGGTCACACGTCATCGACGGTCGTAATGAGAGTCATTCCTCAATCCAGACCTCCGACAGATACGACTCGGAGCACGACAGGGATTCTGTCCCTTACGCCACAGTTGTTTTCGGTGGTCCGTATCAAAACCATTCCACCTGTCCTCCAACCTACGTTCGCTCCGAGTCCACGCAGCCTCTGTTAGGAGCGGAAGACCCCGGCAGCCCCCCGCCGTATGAGAACCTGCCACCAAGCGGCAGGGCTTCATCCAAAGTACAACGCTTCACCACCTTCCCTCAGAATTCCCCTGAGAGTGAGGAGAACGAAGAACTTTGGGAAGAATTTCCGATGCTCAGATCTTTAGAGATCAGGGATACCGAACACATCTAAACTCCAATTCAGTTCCAGTTTACGTGCTTGTTTTTAAGGATGTGCGTGAAGGAAACATTCGAACCGCAGCTGAACGTGATCTAAACCTGACTGTTTTGGCTCACCAGACGGATCTGTTTTTTGCTAAACCGATAAGCAAACCTAATCTCTTTTTGTGCGTTTAAAATGCCCACtcaagtttgtttttgcttttgttgtatTAGTAACTTTCTGCAGTATAGCCAGAAAATGTATATAGGTTAAACAGACCACTGGGGTTACACTGAATGGGAGAAAACAATACCCATTACGGCAGCTCTTAAAGTAAGTCCTTTTTCAGGCAATAGAGTAAAATCACTGCCTGGTTTTTATGCGAAACTTGTTTCAAGAAATTGTTGCGCTGCCCTtccatgtatatttttataacgtTTCGACAGAATGTCTATTTTTGTGTCCTTGGCTTAAAAAACGTATGCAagcatatatatttgtgtggGGGGCTGTATAAGAAAACAAGGGGGTGTTTAAAGTAGACTATCAAAGCAAAGCGTAACCatgtttaatgttcattttcttCTCACTTACCTATTCGCCACGTTATATATTCATctgttgtttcagttttttggaTTGTAGTTACATCACGCAATGTGACAACACTTCCTCTGGAAAGGACAAAATAAGAGTTTCTCCATTCATGATTTTATACCAGGACGTGTGGTGGTGCAATGTTTctagtattgtttttttttaagctcggCATGATCTCGGTGAGCTTTATAAAAAGGTGTTGTTGTGTTGCAAACCAGCATGAAAAGTGCAGTCCAGAGCGTTTGACTTCATTACTTCAATTTCCCGTAactaaatataatgaattaattgcGTCTTGCAGATGTTTCAAGTCGATGTCCATTAAATGTCATTCAGAAATGCCACAaacgcactttttttttttttgttaacatttaatttaatttcttgcCGCTTACAGTTAAGTGCCACATcccatcatcctcctcctcgtcctccagTCAATTCATATTTCGGAGCTTTCTtcgagaaaataaatatttgaactgCAATGCATCAAACACATAATATCCAAAGTACCGTGCAAGAAACGACGCATGAAGATGCATTTCCAGAACAACCCGGTTTGCTGGTTTAACAGAAAGTGctttgctattaaaaaaaataaattcatccTCTTCTAAACTGA

Function

GO:

id name namespace
GO:0030223 neutrophil differentiation biological_process
GO:0030224 monocyte differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161994 lncRNA downstream 12059 3709267 ~ 3717083 (-) True G109638
TU161958 lncRNA downstream 99725 3628808 ~ 3629417 (-) True G109615
TU161957 lncRNA downstream 104130 3624642 ~ 3625012 (-) True G109614
TU161947 lncRNA downstream 310537 3343930 ~ 3418605 (-) True G109607
TU161940 lncRNA downstream 600226 3113842 ~ 3128916 (-) False G109600
TU162009 lncRNA upstream 147526 3891138 ~ 3891823 (-) True G109650
TU162087 lncRNA upstream 197345 3940957 ~ 3941639 (-) True G109716
TU162114 lncRNA upstream 410105 4153717 ~ 4155712 (-) True G109729
XR_006252809.1 lncRNA upstream 436795 4180407 ~ 4181293 (-) True LOC122360497
TU162129 lncRNA upstream 643789 4387401 ~ 4387701 (-) True G109743
XM_043261376.1 mRNA downstream 30072 3684118 ~ 3699070 (-) False hace1
XM_043261375.1 mRNA downstream 30072 3684118 ~ 3699070 (-) True hace1
XM_043261378.1 mRNA downstream 33319 3684118 ~ 3695823 (-) False hace1
XM_043260891.1 mRNA downstream 664564 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA downstream 664564 2938991 ~ 3064578 (-) False ascc3
XM_043260881.1 mRNA upstream 415875 4159487 ~ 4160521 (-) True LOC122360352
XM_043260882.1 mRNA upstream 460069 4203681 ~ 4243342 (-) True LOC122360353
XM_043261771.1 mRNA upstream 768362 4511974 ~ 4614017 (-) True LOC122360932
XM_043261763.1 mRNA upstream 1052198 4795810 ~ 4799825 (-) True LOC122360926
XM_043261296.1 mRNA upstream 1145871 4889483 ~ 4894107 (-) False smpdl3b
TU161934 other downstream 599163 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 2846390 882459 ~ 882752 (-) True G109287
TU161498 other downstream 3096245 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3434157 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 3450668 278356 ~ 278474 (-) True LOC122361163
TU162095 other upstream 351145 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 1488599 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1492034 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1615898 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 2073452 5817064 ~ 5818362 (-) False ndufa3

Expression Profile