RNA id: XM_043260722.1


Basic Information

Item Value
RNA id XM_043260722.1
length 5101
RNA type mRNA
GC content 0.41
exon number 5
gene id fam8a1b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16232972 ~ 16239506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGACTTCGTCATCACAAAACGAAACTGTCATGGCGGAATTAGACGAAAACGCTCGTGATAAGGAAAAATCGTTAGCCAAAAACAGTAGAACTGAGGACGGcgaaaacatgaaaacacagaTTCACAAGCCCCGTTCCCAGGGCAAGAAAGACGCGTCCGCCGCTGTTACCACCACGGAGTACTGCGAAAAATTACAGGAATGGATGTGGCAGTACTACTACAGCTATATGAACTGGCAGAGCTGGATAGCCATGTCTGCGTTTTCCTTCCCACCGTGTTTCCCAACGCAAGGAATAAATGAAACGCCCGGGGCGACGACATGGGGTGCGGATATGTCTAACGGAGACCCTCGCCACTGGTTCAGCAGCCCGTTCGGGTTTCCCGCTGCGGCGGCGAGCGTCGCGGCTCCGGCTGCCGAAGCGAGTCCTCGAGCTCAAGCCTCAGCAGCCGCGCAGCTGCctcagcagcaacaacaacagcagcagcagcctaaTGGGAACGCTCAACAGCCAGGTAGGGAATATTCTATTCCCTCTCCTCTTCAAAGATTCTTGGCAGAAATGGTggatttctttattctttttttcatcaaagcTACAATCATCCTCAGTATTGTCCACTTCAGTGGAATGAAGGACATCTCAAAGTTTGCCATGCACTTCATCGTAGAGGAGATCGATGAGGACACGTCGATGGAGGAACTGCAGAAGATGATGCTTGTGGCTCTAGTGTACAGGATATTAGTTTGCTTTTATGAGATCATATGTATTTGGGGAGCTGGTGGGGCGACACCAGGGAAGTTCCTCATTGGCTTACGAGTGGTCACATGTGACAGCTCCGTCCTGGTTCAGCCAAACCGCGTTCTCGTGGTACCGGCGACCAACGTCACGCTTTCAGCGTCGACAGTGAGAGCATTAAACAAGAACTTCTCCATCGCTTTCTTCTTTCCAGCGTTCATCACgcttcttttctttcagcacaACAGGACTGTGTATGACATTGTGGCCGGCACCATTGTGGTCAAGAGAAACAGGCTTAGATGACTGTCACTGAAATCGATACCAACTCAAAattgtaatgcaaaaacaagCTCATAGACAAATGAGAGCAAATCAGCTGGAGTGACACGTACTGAACTGAACTAAAGCTATTGGCCTCTCGAagaactgtcactttaagagctgaaCACGGTATTTCCAGTATTTCTCACCCATCTTCTCTGGACACCTGGTCTTAAAAGCATGAACTGCTTTCTCAgaagtattttttaatcatttgtggtgacatctttaaatatttttcttgtgcCAAAAAAGATAATTTATAAATGAGCTGCTTCACAATACTTGAACTTCCTCTGGTACATGCATTtcatctctgtttctctctgtttgttaATGTATGTGAATTATGGATCTGGATATTTACTATGAATATTCTTTGACTAATGGAATTCGAAAAAGAATTAACGTTTCTCCGAATGCAATATAGTTTGGTTATATATCCTAATCTACTGACTGGATTTGTATTacagatgaatgttttgtaCCTAATTATTCGTCCCATTTTATGGCCTTTAAcatctaaaaaaatttttttagctgttttgCATACTGTAAGTTTCACTGCATGCCTTTTTCAGCTCTGAGTTCTGTGCTATTCTAAGCTTGAGCACTTTAAGTTGCCTCattctttttcagtttgtttttccttttggaTTGTTTAGATGTGGCCAgatcataaataattaaatgatgtcCCAGAGAAAGCCTACTGTGGCGTCTCTGTTTATAAATGGACCATTTATACCAATAACAATCCTTTCAATAGACACGTTTAAACAGGGATCTATAGCACATGAATAAGGGATTCGTTTTTTTGAAATTGGGTTTACATGTGCAGATGCAGAGTAGGTTGCATTAGGGTCGTTTCCAAATATCTGTAAGAGTCAGAATGTGGACAAACTGAGTAAGCAACTATTTAGATGCCTGTTAAAACATATTccatacaaatttaaaatagttcatttttCATAGGACTGGACCGTAATAAACCTCTGAATGATGGTCAtacatgtaaagaaaaacaattaatttaaaagaatgatgctctttaaatattttgaaataaatacttaaCCTAACCAATATGGTACTGATATATTGTGTATCACTATTGTTCAGCGGATAGTCTGCTTTTAAATTACGTGAATTGAAGAAAGGCAGTGATCATTTGTATTGTGTTGGACAGATAATGTGTATAAAAGTGACTGGCATCTGCTCGTAACAGGTGTTCTCGTCAGTTGAAACGATTCACCAGTAGATGGCGGGAGAGCGCTGATTTGCCATGGAAACTGCCTGTGGATACTGAAGTCATGGCGtgtatatttaaagacaaaatgtttataaaacgGGTGGTTACAGCTAGGGTTTCTGGTTATTAACAACAGCTACGAAGTGTGCGCTATATAACTGCACGCCTTCTATAATTTATCGTTTTATCCGGAAGTGTGTCAGAATTCCAGAGTAGTTCTCCCCACACTGACCATTCTGGGAATTTTGTACAAATCTACCCATCATTAAATGTTATAATCCTTCACGTCACGTTTTATAGTGGAGCTTAAAATACTACCTCTTTGGTTACCTGCAGTCTTCAGGATATCTACTTAATGGGTCCCACAGAATGGGTCGTGAACGATATGatggtgagtaaacgatgacggaattttgggtgaactatccctttaatgcatACTAAAACAACGTTTTCGTTAACGTTCATGTAAATTCGATATGGACCGCCAGAAAACAGTTTTTGTCCTACCTGTGAATGCCATAGGTTAATTACAGCTGtcttgaaatataataattcatttgtaTTACATTGTTTAAACTGGCCTTTCTTTGTCATTTCCactgagagtttttttttttttttttcagggcatatgatttatttgcaaaagcatAATAAATGGTTGACTGTGTTCCTGTAGGCCCAGCAGAAGGCTTTCTCCAACACAGACCCTCATCGCTCAAGTCAGATATTTTCCTTTGCTATGCACCTTTCAGTTTGACCCAGCCGACTTTGAACCTTTTGACCCTTTCATTATCAGAATGATAGCACCGATGTTGCACTGCAGTTATCAGTGAGTAGTGCCCAGCCACGCTCGCCCTGACTTTGTTTATCTCTCAAGTCAGACTGAGAATGCTACGCCAACTATATGACGTCATTGTGATCCAGGGCTCTGTGTGGGGGAATCCAGTCACTTTCATGTTGCTATTATGATAATGCTGGctcattatatataatttgttagaaaaaaaaataatccctTCTGTAGAAGGACGTCAAGCTAAAGTGTTCAGCAGGTGTCTCTCTGATCTggtcttttaaaatgtctggcaatgaatgtgaaaatgttgGCAGGTACTATAAAAGCGCATTCATGTATACACGCTCGtgcaagttttgctgttttGAAGTGGTCTGAAAGGTGAGAGAAGGAAAGGACACAGTCGGGCTCTAAGGCATGTTGTCAGGGGCTCCCAAACAACaagctgattggctgattgcACAGCGTTCTGTCATTAATTGGTGATGTGTTTTACTTTCTGTAGTAATGATGTCATCAGTAGCCAATCAAAGTGCCATGGTGACTGTGATTGGTGTGATCTGATTGGCTATTCCGTTGAAAATAAGATGGGGTTGGGTTTCTCATCATCCAAGACTGATGTTCACTCTGAGCTTTTGCAAAATGAGTCTGCTCTTCCGAATCAATGATCAAAATGACAATAGCGGGGAACAGTGCTCTCAAAACAGCAGTAAAATCGTCATTggcatttttactttattaccCCAAGACAGCAGCATACAGTGTTGAATTGTAACTTAATGTCGTCGTCTTGTACTGTCGAGAAACGAGGGGATTTCCTCATCCTTTATAGACAGTTGTTAAAGCCATATACTGCTTAATAGAAAGTTAGCACAGTGAAACATGGAAGTGCAAGAAAAAACATTGGTTTGTGGAGGTAGATTTGATTAGTATATGACTTTAATTATACCAATGGGAAGTTAAATCGCAATGCCATGTAGCACACTTTACATGCTATAGAAATGTATcgaaatatacagaaaaacatatagtaaaaatacatatattccTCAGTTTGAGGCCAGTCATCCTCTGAATTTAGCACAGACTGTTATCACAGTTCAAAAGTGCTGACCAACCTTGTCAATGTCCCCGAGTCTGTCTGCAAGGATATTAATGTTTAACACCTCCCAGGTTTACACACTGACAGGCGTCTAACTATGTTTATGTGACTCATTGCTCTCTGGCAGACGTTTTAATTAGTGATCCAGCTGCAAGAGAATGGAGACTTCAATGTCCATTATAACGGAAGGTGCTGAGATGAGAATGGATGGGGGGGTTAATCTCAGAAGGGACAGATTTGGCGGCAACACTGTGGGAGAGGCAGCAAAGCATGTCTGTCATTCATGACTATATGTTGGACTTTCTGTCTGCTGTGTGATGACTTGATTTAAAcctgtaattaattattaaaatccTGACTGGGGGCTTTATTCAGTGGCAGCTGCTGGTGAATCACAGGGACTGACAGCTTGCCAGAGCTTCGGTATACTAGAAGATAGACTACAAGATCATAGGGGACAGCCATACAGTCCTTGTCTAAACAGCATGATCAAATTTGTGTATTCAAATAGGCCATTCCACTGGAAAGTTATGTTTGTAGGTTGGGAAAGTGACCACTAGATCGTTGACTTACAGTCATACTCATTTATGGCCCAATTACTTTGAATGAACATTTGTTGACATGAGGAATTCTTGAATCTGGTCCTCGGTCATTCGGGAATAGTGAACTCAGTCATGCTGCACAAAGGGGAAATTGTCTGCCCGGCAACAGTATCAGTGTTTACTAAACAATTCAGGCACAGCAAATTCACAAAATCAGGAAGTtgtgctgaaaaaaatgtatttcaagcAAAATAGATATAGAATAATTCAATTGAGATGTTTAGAAAGAGTGGATTTTACTATCAATgttctattttataataaaaatcattgcaTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167287 lncRNA downstream 36295 16120326 ~ 16196677 (-) True G113281
TU167286 lncRNA downstream 37076 16194029 ~ 16195896 (-) True G113280
TU167319 lncRNA downstream 40283 16190862 ~ 16192689 (-) True G113300
TU167254 lncRNA downstream 91737 16139412 ~ 16141235 (-) False G113267
XR_006252851.1 lncRNA downstream 165427 16066166 ~ 16067545 (-) True LOC122361072
TU167356 lncRNA upstream 112764 16352270 ~ 16356916 (-) False G113325
TU167358 lncRNA upstream 112764 16352270 ~ 16357623 (-) False G113325
TU167360 lncRNA upstream 112764 16352270 ~ 16357623 (-) True G113325
TU167361 lncRNA upstream 112764 16352270 ~ 16357623 (-) False G113325
XR_006252836.1 lncRNA upstream 248612 16488118 ~ 16494739 (-) True LOC122360769
XM_043260868.1 mRNA downstream 4506 16218661 ~ 16228466 (-) True atxn1b
XM_043260160.1 mRNA downstream 22339 16197719 ~ 16210633 (-) False dtnbp1a
XM_043260161.1 mRNA downstream 22339 16197719 ~ 16210633 (-) False dtnbp1a
XM_043260159.1 mRNA downstream 22340 16197719 ~ 16210632 (-) True dtnbp1a
XM_043262055.1 mRNA downstream 78584 16152504 ~ 16154388 (-) True LOC122361096
XM_043260723.1 mRNA upstream 448 16239954 ~ 16243472 (-) True zgc:110410
XM_043260724.1 mRNA upstream 16976 16256482 ~ 16264542 (-) True derl1
XM_043260721.1 mRNA upstream 27532 16267038 ~ 16272470 (-) True tomm40
XM_043261015.1 mRNA upstream 33774 16273280 ~ 16280228 (-) True ddx61
XM_043260864.1 mRNA upstream 41381 16280887 ~ 16301782 (-) True bcl3
XR_006252800.1 other downstream 4506 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 91737 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 219221 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 371079 15857599 ~ 15861893 (-) True G113220
TU167155 other downstream 413886 15816979 ~ 15819086 (-) True G113203
TU167506 other upstream 440691 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 750796 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 2117911 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 2253120 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 2253120 18492626 ~ 18520287 (-) False mroh1

Expression Profile