RNA id: XR_006252796.1


Basic Information

Item Value
RNA id XR_006252796.1
length 1463
RNA type transcript
GC content 0.48
exon number 7
gene id vegfaa
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5232211 ~ 5245558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTGCGGCCGACCAATCAGCGCTCTCCCGCCTGTGCGCCGATACGCTCAAGACCTGCTGAGAAGTGACAAGACCTCATACTGCCAGATAACATCCACAACGTTAGGACACAACAGAAACCAAAGCAACAGCGGGAAAAAAGACGAGAAAAAGAAGGACAAATCTGCCGCGGTTTAACCAGGGATTGCCACAGGATCACTTTACACGTAGCGCCTCGCTCTTGATGATAAGCGTACGCGCAGGAGCCGTTCTCTGGCCCCTATAGAGGTTGCGCTTGGAAGTGTacgaaacttttttttttttttttttttttgctattttttgcCTGTGACCTTTTGGAATCAGATTTATTAAACGCCGACCTCCCGTTATACCGTGGATCCTAAGGGCGAAAAAGGGAGGACCGGTGTAGTGTGGAATTCCTCCGCTTTCTTTTCTCTGccgttcttttttttattttgctctcGCTGCGTTAAACTCTGTTTTCCGGAGGAGCGCGTGCGTTCGAGAAGTTGAATTCGACGCAGGTGCTTCGGTCCCGAAGGGCATAATGGGATTGTTACTTTGACCCGCGATATCACGGTTCGTTCACATCCAGCAGCTTCGCTTTTAATTGTTTCGAGAGCCAAAGACTGTTCAGTAACACACCGCTGGAATTACAACCATGAACTTTGTTGTTTATTCGATACAGTTATTTTTCGCGGCTCTCCTTCATCTGTCTGCTGTAAAGGCTGCCTACATACCCAAAGAAGGGATGAAGAGCAAAAACGAGGTGATTCCCTTCATGGATGTGTACAAAAAGAGTGCGTGTAAGACGCGAGAGATGCTGGTAGACATCATTCAGGAGTATCCCGACCAGATCGAGCACACCTACATCCCGTCCTGCGTGGTTCTCATGCGCTGCGCAGGCTGCTGCAACGACGAGGCCCTCGAGTGTGTCCCTACAGAGACCCGCAACGTCACCATGGAGGTACTGAGAGTCAAACAACGTGTATCGCAGCATAATTTTCAACTGAGTTTCACAGAACACACCAAGTGTGAATGCAGGCAAAAGGTAGAAGTcaaatcaaagaaagaaaaAAAAGCCAGAGTGGGGAGGGTTAAAAGccgaaagagagcgagagagggagaTTCGGGCGATCTCAGCGCCTCGGCTCACCTGCGCTCAAGCAGTATTTTGCTCTCAGTCGTTGGCTTTATTTCAGGGCAGCTTGTTTGCTCTTTGTAATCTCACTTGTCCCGTTGGCTTTAAGCCccagtctgcatttatttgtactcTAATTCACACTGTTGGCCCACGGCCCGCAAAGAGGAAAGCAACCAAAGCCACTGTGAGCCTTGCTCAGAGAGAAGAAAGCGCTTGTATGTGCAGGACCCCCTCACCTGTAAATGCTCCTGCAAATTCACACAATTGCAATGCAAGTCCAGACAACTTGAGTTAAACGAAAGAACTTGCAGGTTTG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0048793 pronephros development biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0048844 artery morphogenesis biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0051894 positive regulation of focal adhesion assembly biological_process
GO:0030878 thyroid gland development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0043491 protein kinase B signaling biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0035477 regulation of angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005576 extracellular region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252732.1 lncRNA downstream 28227 5198791 ~ 5207419 (-) True LOC122359853
TU162406 lncRNA downstream 44296 5190781 ~ 5191350 (-) True G109907
TU162405 lncRNA downstream 44941 5190350 ~ 5190705 (-) True G109906
TU162384 lncRNA downstream 58111 5177331 ~ 5177535 (-) True G109891
TU162380 lncRNA downstream 146342 5088901 ~ 5089304 (-) True G109887
TU162416 lncRNA upstream 1778 5247238 ~ 5321296 (-) True G109914
TU162462 lncRNA upstream 100945 5346405 ~ 5347559 (-) True G109942
TU162481 lncRNA upstream 150670 5396130 ~ 5396354 (-) True G109953
TU162484 lncRNA upstream 151837 5397297 ~ 5397517 (-) True G109956
TU162464 lncRNA upstream 190372 5435832 ~ 5437067 (-) True G109944
XM_043260019.1 mRNA downstream 58834 5173650 ~ 5176812 (-) False rrp15
XM_043260018.1 mRNA downstream 58834 5173650 ~ 5176812 (-) True rrp15
XM_043261461.1 mRNA downstream 65016 5138694 ~ 5170630 (-) True tgfb2
XM_043260153.1 mRNA downstream 140051 5090511 ~ 5095595 (-) True lyplal1
XM_043261415.1 mRNA downstream 188765 5027170 ~ 5046881 (-) True adcy3a
XM_043261275.1 mRNA upstream 110527 5355987 ~ 5360418 (-) True ppp1r8b
XM_043260026.1 mRNA upstream 121872 5367332 ~ 5379962 (-) True rpa2
XM_043261998.1 mRNA upstream 173013 5418473 ~ 5420640 (-) True tpbgb
XM_043260677.1 mRNA upstream 263157 5508617 ~ 5559896 (-) True bckdhb
XM_043260675.1 mRNA upstream 315021 5560481 ~ 5570782 (-) False ttk
TU162095 other downstream 1140142 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2105667 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 4352894 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4602749 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4940661 294867 ~ 294985 (-) True LOC122361256
XR_006252935.1 other upstream 114050 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 571604 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 698761 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 783748 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 851215 6096675 ~ 6099927 (-) True G110215

Expression Profile