RNA id: XM_043260772.1


Basic Information

Item Value
RNA id XM_043260772.1
length 5069
RNA type mRNA
GC content 0.48
exon number 28
gene id snap91a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23752336 ~ 23787702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCGGCTGCCCGTTATCGCTGCGTTTCATCCTAGTTCTTCAGCAATTGTCCGAAACCGGACATAGCCACGGGGTGAAGGAAAAGGAAGGCGAGCGGTTTTTTTTAGAGATGAGGAGAACAACGCAAGCCGTTTGAAGGTTTGGGTGACTGCACATCCAGCGGGGTTTGTGAGGAAGATTAATCCTTGATCTGGAGGAGGAGAGAAGGACGACTGGTCGAGCCGAGCATCATCGTAACATCCTCTTCCAATACGACGCGCAAATAACGAGGATTATCTTTTAAGACTTTATAAAAAATTGTCTTTTATAACCCTAACGCTCACCTTTTACTCTTTGTAAATTACTATTTGCGGTTGAAATACTCGTTACGCATCTCTTGTGTGCTCCCGCATCCCCACGAGGCGAATACACGGCGCAGGCGTTGACCTGaaatttatatgatattatagtAAACACAGAGtctctctttgtatgttttagtATTGCCTTAAATATGCCCGTTGCTCGTTATCCATGATAAAGTCTTCGTCTCGGCTTGGTCTTGATAACAATTGCATCAAATTGATATCGCAAATTGAGCTCGAGAATCCATTTTAAAGGGCCTCATCCTTGTGGACGCTTTGGAACAACTCGACGCGTCTCTTCGCACGGGAATAAGGGCGTTTGAAACCGCGAGAGAAGGAAGATGTCGGGTCAGACTTTGACGGACCGCATCGCCGCGGCGCAGTACAGCCTCACGGGATCCGAAGTGGCTCGTGCGGTGTGTAAAGCGACCACGCATGAGGTGATGGGACCTAAAAAGAAACATCTCGAATACTTGATCCAGGCAACCCAGGAGTCCAATGTCAATATTCCTCAGATGGCTGATACCCTGTTTGAGAGAGCAGGAAATGCCAGCTGGATTGTGGTTTTCAAGGCTTTGGTCACCACTCACCACCTGATGGTTCATGGCAACGAGAGGTTCATCCAGTACCTGGCCTCCAGGAACACTCTATTCAATCTTAGTAATTTTTTGGACAAAACCGGCTCTCATGGTTACGACATGTCAACGTTTATCAGACGCTACAGCAGGTATCTGAACGAGAAGGCTTTTGCCTACAGACAGATGGCTTTTGACTTTGGCCGAGTGAAGAAAGGTGCCGATGGTGTGATGAGAACAATGTCTACAGACAAGCTCTTGAAAGGCATGCCCACGCTGCAGAGTCAGATCGATGCTCTGCTGGAGTTTGATGTTCATCCAAAAGATCTTGTCAATGGGGTGATCAACGCCGCCTTCCTGTTGCTTTTCAAGGATCTGATCAAGTTGTACGCCTGCTACAATGATGGCATCATTAATCTCTTAGaGAAATTCTTCCAGATGAAGAAAGGACAATGCAAAGACGCGTTGGAAATCTATAAAAGGTTCTTGACACGAATGACCAGAGTCTCAGAGTTCCTCAAAATTGCTGAGCAAGTGGGAATTGACAAAAATGATATTCCTGAACTTACGCAGGCCCCCGAGAGTCTTCTGGAATCTCTGGAGACACATCTCAACACGCTTGAAGGGAAGAAAGTgTCACCAACTAAGAAGGGATCTCCAACAAATAATGGAACGCCTGCTGGTACCCCTGCAAAAAGCGCAGAGCCCACCTCTGCAGCAGCTGCCATTACTGAGACCACCACAGCAGAGCCTGCAAAAGCAGCACCAGCTACAACCACCATCAACAGCGGCTTTAATGATCTCGTGGATTTTGATCTGTTGGCTCCAACTGCAGGGGCTTCAGCAGCTCCCACAGCATCATGGGGAGATCTGCTtggtgaggACTCTCTGGCTGCTCCTGCCGCTGCTGCCGCTAGCTCTGAAGCGCCCCTCTCTGAGGCTGACTCTGCCGCCGCAGCCTCTGCTACCGAACCAGCAGCTGACGCCATCGCTGCCCCGGCCGCTGCCTCGCTGCCAGTGCCTGCCCCCGCTGCCACCATGTCAGACATGGATCTTTTCGGAGATGCGTTTGCGCCCTCCCCAGGCGATGGTCCGAGCGAGGGTGTGACCCCAGCAGCTGCTGCAGATGCATGTGCCGGATCTGACCCCTGGGCTCCATCCGAGGGGAGTGCAAGCATTGCCCCAGAGCTGGACCTCTTTGCCATGAAGCCGGTAGAGAGTGTCGCTACCGCAGCGTCTCCTACCAGTGCCGAGCCGAGCATCTCGCCAACAGCGACCCCAGATACCCCTTCTCCTCCCACCACTACTGCCACCATCACCGCAACCGCCACCACTACCACAACCACATCCGCTACAACTGAGTCCGCGGCCCCGCCAACACTAGACCTCTTTAGTGATATGTTTGATTCTATGCCTGAGCAAAGCTCCTCCACAGAGCCCAAAGCAACCACTCCTAGTGTAGACCTTTTTGGTGCAGATCTTCCCGCTGTCTCACGCGGGCCCTCACCTTTACCTGAGGCCAGTGTGACTGGTGACCTCTTGTCTGACTCATTTGTTGCTCCAGCTGTTGCTCCGGTGGCTCCTACACCTGCTGCTCCAGCTGCTCCTGTCTCTCCTCCTAAGGCTGAACCTGCACCTGTGCTGGACCTCCTTGACACATTTGGTGACACTACCGGGGAGACTCAGTCCACTGCTTCCGGAGCAGCATCAGGTGACCTGCTTGGAGGGTTGATTTCACCGGTCGCCCCGACGGTTACACCGACCCCAGCACCAGTGCCATCTTCGGCCCCGGCTGACCTGCTGGAGTCAGCTTTTGATGCCTTTGGCTCTGTGCCGGTCTCTGCCacaccagcagcagcagacaTAACCCCTGCCACCGCAGCGCCCTCTGGTGGCTTCGATGCATCAGTGTTTGACGGATTAGGAGACCTTCTGATGCCAGCCATAACGCCTCAGAGCACAGGTGGGACCCCCATGGCTGCAGCGAGCCCGCCGTTGGCACCTGGGATTGTGCCCACCGCTGGACCAACAATGGCTCCGGCCATGGCTCCAACAATGGCCCCAACAATGGCACCCACAGCTGCCCAACCAATCAAACCTATCGGAGGAGACTTGGACTCTTCTCTCGCCAATTTAGTCGGAAACTTGGGGGTGGGAAGCCAAAAGAAGGACAACCAGTGGAATGAGAAGAAGCTGACAGGAGGAGCTAACTGGACCCCTCAGGTCGCCCCTACTAGCTGGGGCACACCTGGCGCTCAAATGTCTGGCTCCGCTCCTGGAGCCCCCGGAGCTGCTGCCCCACCTGGAGCAATGGGAGCACAGCCTGGCTTTGGCatgGCTCCAGCAGCAGGTGCTCCCATGATGCCCCAGCCTGTGATGATGGGACAGCCCATGGGTCAGCCCATGATGAGACCACCATTTACAGGGCCAGCAGCAACAGGAACACCCGGAGCACCATTGTCTCCAGGGCCAGCTGCTCAGAGCCCCAAAAACCCTCCACCAAGGATCCCCTTGCAGATCTGAATATCAAGGACTTCTTATAATTTCCCAGTATTTGTTTTCTCAAAGACTGAGCTCCAGTGAGAGAAGTCTGCTGTCTGTTTACACCCCCAGACGCCCGAGGAGCCTGCAGCTAGATATCCACTGACCCCGCCCACTCCGCCCCGCCCCGCCCCGCCCAGCCTTCCTGTGTCATGTTGTAGCACAAACTGTGAAGTGAATCATAGAGAAAACAAGCCGAAAAATGAAGATGTGCTTATTTCGATGTTATCCTTTGTTTTGAACGAAACAGAATAAAATTACTacgaaaaacacaaaaatgaaaacgagCGATTCAAAAAAATATGCGTACGTATGTCTTTTCCAGTGTTTAAGTCTGAAATGAATGATGTGTGTATGTGGATCCCCTCAACTTCTCATTCCTCTAGGACTCCCTTTTTGGGGTCAGAGGTCCTAAACAGGTTGTTGAAGCGCTTTCTGTTGTATGTTCATTTTGGAGCAGTGTGCAATGTATCATGATTCGCAAGAAGGTAATCTGTGTATATTATCCTCATTGACCAAAAAAAGGTCTCTCCTCTGCTCAAATTTTTATCTGTGTACAACTTATTGATGTGAACCTGGTATTCGGATTATAAGACATGCTGTTTTCATCTCCCATCATTGATtgacatttgtttgtttacaaataataaatatatgaattctaaatatatatatgaattatgtataaattaataacatatcCAGGCTCCTCTATCCTAGATAAACCTCTTGGTGTTTAcatgtcatttttgtattttaactggtatttatttttctgatatatacatatattttttgattcTTTAGTTGagactttgttttaatttaaatgtcagtTCGCGGTTTACATAGTTTCCCCATGAGAATAACCTCAAAATTTGACTTTAATTCACCAAATCTCAGTGCTACAAATCTCAGATGCTCTATAAGAAAGGCCTTTTGCGGTATCTTGacataacaaatgtacagtGACTTGTTAAACCGGTTacccccacccaccccaaaaAGGAGAAAATCCCCCTCCCCAAAAATTTCACAGTTGTAGTCAGTGGAATGCTGTGTTTGAGTCTCATAGTTACTTGTGCTTGTATGAAATCCAAATTGAAGTTGGTACATGTAgtgttattttgtataattgtaGAAAAACCCATCCACATGTTCGGTTCTCAGTCTTTTCCAGTCATTACATTATAAACCCTGACCCTTGTTTGTTACACGTAACAGTTGCTTCCTCTGTTGGTGAGTGGTGGTATTGTAGTTTGCACAGCAAAATAAGATTGTGGAGAAGATATATTAGATGAAAATACATAGAAAACAGAGTGTAAGTTCATTAGCAGAGATAAACCCTTAGATCTGTACAAGTTTTCAGGAGGTCACTGTTAAACAGTGTTACAGAAAGATCTAATTGGCAGCCCTGTATAGCAAAGCCTCTGTAACTCACTTTCCCTGTTAGATCTCTCATGAAAATAACAAAGGCAGATCTTCGGATCTCTCTTTTGCAATTctcttgaaataaaaactattttgatttattgattcatATCTGACACCCCTACATAGTGCATGTAAGCCCTCTGAGATGCAATAAACACTGATGGGAAGAATTGCC

Function

GO:

id name namespace
GO:0048268 clathrin coat assembly biological_process
GO:0030118 clathrin coat cellular_component
GO:0005545 1-phosphatidylinositol binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 424443 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 562686 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 584396 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 674466 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 28199 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 29202 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 32821 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 32821 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 33154 23820852 ~ 23822288 (-) True G115914
XM_043260941.1 mRNA downstream 15699 23676990 ~ 23736637 (-) True me1
XM_043260942.1 mRNA downstream 15716 23676990 ~ 23736620 (-) False me1
XM_043260465.1 mRNA downstream 76991 23668065 ~ 23675345 (-) True mchr2a
XM_043260939.1 mRNA downstream 142502 23582993 ~ 23609834 (-) True usp45
XM_043260063.1 mRNA downstream 172455 23572971 ~ 23579881 (-) False pnisr
XM_043260767.1 mRNA upstream 1408 23789106 ~ 23811675 (-) False dop1a
XM_043260768.1 mRNA upstream 1408 23789106 ~ 23811675 (-) False dop1a
XM_043260766.1 mRNA upstream 1408 23789106 ~ 23811675 (-) True dop1a
XM_043260779.1 mRNA upstream 24253 23811951 ~ 23815789 (-) True pnrc2
XM_043260240.1 mRNA upstream 296789 24084487 ~ 24087339 (-) True utp11
TU171098 other downstream 77038 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 142495 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 227954 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 818369 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1663282 22087649 ~ 22089054 (-) False eny2
TU171232 other upstream 539009 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 1880121 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2591974 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 3019422 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 3022619 26810317 ~ 26812909 (-) False G116632

Expression Profile