RNA id: XM_043260779.1


Basic Information

Item Value
RNA id XM_043260779.1
length 3128
RNA type mRNA
GC content 0.41
exon number 3
gene id pnrc2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23811951 ~ 23815789 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACAAACTGGAGAAGGAGAATAATACCATTCCGCTGTAGACTCGGATTTGAACAAAGATTCGCATATCGGGAAATATTTTCTCCATAAACAGCTACAGCTGACATACTAGACCAAGGGAAGACGAAGGGCTTATTCCATCGAAGCCTAAGGAAGTCGATTCACGGCTTCTAGAGCACCGTGCGCCGAGGTGAATTCATGTTCAGCTCGGTTACACGACAAAACAACGCTCATTGGCACATGAAAACTTCAGATCTTGCTGGACATAGATGTGCAGCGAGAAGTAGATCAACTACTTCGAGGACCTGGAGCCCGATTGGTGAAGAGAAATTAAAAAGTGAAGAGAACCACGCACTCAACTTTTCTACAACAGAGAGGTGACATCCAATCAAAGCAGTATGGGAGGTGGCGAGAGATACAACATTCCAGATCGCCCGGCGCCCAAGAAGAGCCACCAGATCAGCAGGGGCAAGCAGAGAAGTCGAGACCAGAATGGAGTGGTGCATTCCGCCTCCTCAGGAGCCTTAGGGGTGCCCCATCACCACAGCCATCGCAGGGGTGAGAAGGGCACCAGCTATTCTTGGTCTCCTGAGGCGCGGCAGGCCGCGTCTGTAGACAAGAAAAATGCCTCAGTTCGTTTTGCCACACCTTATGATCAGAATTGGGAGGGTACCGTGTCCCAACTGAACAAACTTTTGTCAGCTCAGTGTGGTCAGAACTATGCTGGAGCCAAGTTTAGTGAGCCCCCATCCCCAAGTGTGCTACCCAAGCCCCCGAGCCACTGGGTGTCTCTTCCCATTGGCGCTTGCGATCATCGTGAGATGATGACCTTTCAGTTAAAGAGCCTCCTGAAGGTTCAGGCCTAAGAAGGTCACTCACTGCTGCTCTCTTAAGCCAATATATGAACGAAGGCTCCGCTTGGGCGTCTTGCCCTCCTCTTGAATGCTCCAGCTgcgtaatatattttacagctatttttaGATTTGCGTCTTAATAAGGTGATGACCATTAGGCAGGCAGATGTTTCTTCTGATGTTCACCacctaactttttttaaaaaacaactcaTGGTTATTACGTTGCTGTAGCCTTGAAGAGCGGTCGAGAAGTTTTAGCGGAGCCGTATGCCATGACAAATGATGAACTGGATGTCCTCCTTAATAACTCATTGCTCTGTTAtgctcttgttttgttttgttctttttttgatgGCTGTTTGTGACGgtcagtgtgttttttcttctcaaCTAGGCCTAGGAGTAGACAAAATCCACAGTTTCCTTGCATTGTTTTTCGCTTGCTGAGGTTTGCTGCATACTCTCGGCTTGAGTTTTAATCATGCAGGGAGTGTCAGAAACCTCTTGGTGCTAAGCACAGCAGCATTTGTAGCGTTATAGTGCATACTGCATTTCCAggtatctatttttattttgctttttgggAAGTAAAAGCCACTCGACTTCGTTCTGCAGGGAGACCCAAGCGAACAGAATACGAAGGGGAACAAGCTTAAGTGAACATAGGTCATTTGACTAACCTCAAGCCTAATGAGGTGGCACAACGGACCTTGTGCTTTCAACAcctgtacttttttttccccttcctttttttttaaatggcgcTGTGCGCATTGCACTATAGGTGTTGAAATTCTCTAAGGTTCACAAGCTCTATTGCAGCgttaaactttcttttttgcatCCCTTGTTTTAGCTTAGAAAACTAAGtgtgattttaatgtttacCAAAGCTAAGAAATCATCAATTTTCAGTTGAAACCCCCTTGCTTGACCAGATCTGGTTACAAGTGCCATAAATCATCGGGTAAGGCATTAGCGTATATCAAGGTTTTGGTTGACAAATcatttttggaatttttttttttcttctttcaactTGGCTGTACTTTTGAAATGATCACAGAGCAAATATGCGGAGGAGGGTTATGATGTGAGAACATAGATATTTTCTGTGATCTCATCTCGTAGCCTTGTTTGCTATGTGATTGTTTTGATACAGGTGTTATGTTATGAAATGTGTGTATTATGGCACGGGGGAACTGAGAAATAGGGCGCAAGTCCGGTAAGGACATgtttacattattgtttttattagaaGGCAGGCAGCcgacattatacacacacacactgccctTTCTCACTTGTTGTTATTCTTGCACTGCTGTTCATTTGTGTTCAGACGTTTCAGACAATGTTGCTCTTTCAACTGTGGATATGTGATGAAGCACCCCTTCCCACTTAGTAATGAGTGTGGTGGAAACTACCTCTCTCGCAGAACGTGATGTTAATAGCTATCTTAAAGATGACAAAACAAAGCTGATGAGTTTTGATATGTGTAATAGAGccatgtaaataatgaaatgtataaaatgttgtAGCATATTGTACATTTGTGCGGGATTGTTTGAAACCTGCAGATAaagtatttttagtaataaCACTGAATGTAAAAGCCACGCTAAGGACGTggcttgttttaaaaatgctgaagaatattttgtttaaaaaaaaaaaaaaagaaaattttgcATATAGTGCGTCAAAACCCCTGCACTGTGTGATTTGTTGCCAGTGATCTtgcacataatatttttttgtataatgcaCCATGTAGGGGCAAAGCGAGCTTTAAgtgcaagttaaaaaaaaaacattttgaaatcgAAAGggacttttatacattttgtttttgagttgcctatgcaaatagatttttaattttttttttttgcattgatatAACCCTCATTATTTTGCCCTTTTTCCAGAGTACATAAAGCAGTGTTGCATTCGCCCCAAGTCATTGGTCTTTCCTCCTTCGTCCAATGCTTGAAGccagcaaagctgcattttacCTCCAGAATGCCAGAAAgaattttaaccttttaaagtaataagtaaaaaatttttttaatagaatgtgTAAAAGTCCTTTTCCTAAATTTGGTTATCTTGAACAATTGGCTGTGAATTTATCCCAACCTTTAAAATGTCACTTGAAATGGAAACTGAAAGCCCTTTTGGTAAGAATTGAACTAAAATTGTACTCAAAGACTGTTTAATTTggttgtctaaaaaaaaaagaataaaatcctTTCCCTTCCCCCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K18751 PNRC2; proline-rich nuclear receptor coactivator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 484058 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 622301 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 644011 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 734081 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 108 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 1111 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 4730 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 4730 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 5063 23820852 ~ 23822288 (-) True G115914
XM_043260767.1 mRNA downstream 276 23789106 ~ 23811675 (-) False dop1a
XM_043260768.1 mRNA downstream 276 23789106 ~ 23811675 (-) False dop1a
XM_043260766.1 mRNA downstream 276 23789106 ~ 23811675 (-) True dop1a
XM_043260777.1 mRNA downstream 24249 23758581 ~ 23787702 (-) False snap91a
XM_043260775.1 mRNA downstream 24252 23752336 ~ 23787699 (-) False snap91a
XM_043260240.1 mRNA upstream 268698 24084487 ~ 24087339 (-) True utp11
XM_043260043.1 mRNA upstream 319094 24134883 ~ 24154422 (-) True rspo1
XM_043261532.1 mRNA upstream 380908 24196697 ~ 24198654 (-) True dnali1
XM_043260102.1 mRNA upstream 495700 24311489 ~ 24316132 (-) True rcc1
XM_043261588.1 mRNA upstream 501693 24317482 ~ 24339788 (-) True phactr4b
TU171098 other downstream 136653 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 202110 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 287569 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 877984 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1722897 22087649 ~ 22089054 (-) False eny2
TU171232 other upstream 510918 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 1852030 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2563883 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 2991331 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2994528 26810317 ~ 26812909 (-) False G116632

Expression Profile