RNA id: XM_043260780.1


Basic Information

Item Value
RNA id XM_043260780.1
length 9600
RNA type mRNA
GC content 0.47
exon number 21
gene id syngap1b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19095755 ~ 19195429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATAAGCCCAATtatgagcaataataataatagcgaATACGGCTAACGGGctactgcaaaataaaaataaaaaaacattgaaagtgAAATAGTAACAGTCAGCTGGTCTGTACTTTGAGAAATGCAAAAAGTTAATATCTGAGGTTTAAAATTTCGCATTGAGGTTCAGATGAGCCGTTCACTCATTGTGTTTCTCACATTAACATCCGCGGCGTCGCCATGCTATAGTATTTTGGTCACAATGAATGCCATATTCATATTCCCTGATATTTAACAGTCACGTGACTCTATAGGGAAATTATATCACATCGCATTAACAGGCACACACAGTGCATTTAGATCGATCTACGCTGGTaaacgcgcgcacacacacacactcactcgcgcGCGCGCACGCTCCCTTCACCGCCCccttctctccgtctctctctctctctcccttcgttctcctcttcttcatcactCTTGTTTTACGCGTGTGTGATATGTGATGCGATACGCTGGCTGCAACCATCCCAATGGCTCCCGTCGACCGCGGACGATGATTTCGTTTCGGTTTTTCCATTCGCATCGCGGGAATATCGCTCCAGCGTCGACGCAGTCCATGAGCACGAGGGGTTTTTTTTCGCTTCCCGTGACTGCTGAAGGATATTTCTGCATGTCGAGAGACTGAAGAGACGCGGGGAACACGTTCAATGCCGTTGGAACATGTCATATGTTCCCTTTCAAGATGCGAGGTATGCTGTCCCCCCCTCCTACCGACACCAGCCCTCCTTCGCTGCTGCTCCCTCCTACGAGCAACCCGACTGGAATCCTCGTCTGTGTGTGATCAGTGGAAATCAGCTCTACATGTTGGACCAGGAGGAGGTTCACCCTTTGTTGATGCGCGAGCGGCGCTCGGAGTCGCACAGGAACAAGCTGCTGCGACGGACGGTCAGCGTGCCTGTGGAGGGGAGGCACCATCCTGAAATGGACCACGCTCGGCTCCGGCGGAAGAGCATCGCCACCGGGAAGCAGCCAAGCATGGAGATCCCACCCACTGCCCCCCCACAACCCTTCCGACAATCCAGTTTCCTCAGTAGAAGACTGAAGGGGTCCATTAAACGGGCCAAGAGCCAGCCCAAACTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGTTTCCGCAGCGCCGACCAAGACCGGACTCGTCTGATGCAGAGCTTCAAAGAATCACACTCCCATGAGTCTTTGCTGTCTCCCAGCAGCGCAGCCGAGGCCTTGGATTTGACACTTGATGAAGATGCGATCATCAAGCCTGTTCACTCCAGTATACTGGGACAGGAGTACTGTTTTGAGGTGATAACTGCTTCAGGAACAAAGTGTTTTGCCTGTCGGTCGGCTGCGGAGCGAGACAAATGGATAGAGAATCTGCAGAGAGCTGTCAAACCAAACAAAGACAACAGTCGACGCGTCGACAACGTTCTGAAGCTGTGGATCATCGAGGCCCGTGAACTCCCGCCCAAAAAGCGCTATTATTGTGAACTGTGCTTGGATGACATGCTTTACGCTCGCACCACCAGCAAACCCCGAACCGATACCGTCTTCTGGGGTGAGCACTTCGAGTTCAACAACCTGCCAGCTGTCCGCAACCTCCGCCTTCACCTTTACAAAGAGACGGACAAGAAAAGACGCAAGGAGAAGAGCACATACCTGGGCTTGGTCAGCATTCCCATTTCCAGCATCACTGGTCGTCAGTTTGTGGAGCAATGGTACCCCGTCATTCAGCCCAGCGTCCTGGCCAAGGGTGGAGGTGTCGGAGGGGGCAAGATCATCAACGCATCCCTGCGGCTCAAGTCTCGCTTTCAGACCATGAGCATCCTGCCCATGGAGCTGTACAAAGAGTTCGCAGAGTATGTGACCAACAACTACCGAACGCTGTGTGCCGTCCTGGAGCCGCTGCTGAGTGTCAAGAGCAAAGAGGAAGTGGCCTGTGCTCTGGTGCACATCCTGCAGAGCACAGGGAAGGCCAAGGATTTTCTGTCAGACATGGCGATGTGTGAGGTGGACCGATTCATTGACCGAGAGCACCTGATCTTCAGAGAGAACACCCTGGCCACCAAAGCCATAGAAGAGTACCTCAAACTCATCGGACACAAGTACCTCAAAGACGTTTTAGGTGATTTTATCCGGGCGCTGTAcgagtcagaggagaactgtgAAGTCGACCCAATGAGGACCCCTCCTTCTGTGCTGCCTGAACATCAAGCCAACCTCCGGATGTGCTGTGAGCTCGCTCTCTGCAAAATCGTCAACTCCCATTGTGCGTTTCCGAGAGAACTGAAAGAGGTGTTTGCGTCGTGGCGCGTTCGATGTGCTGAGAGGGGAAGAGAAGACATCGCCGATCGACTGATCAGTGGTTCCCTCTTCCTGCGCTTCCTGTGTCCAGCCGTCATGTCACCCTCCTTATTCAACCTCACCCAGGAGTACCCCGATGAGCAGACTTCACGCACACTCACCCTCATAGCCAAAGTTGTGCAGAACCTTGCAAACTTCTCAAAGTTTGGCAGTAAGGAGGAGTACATGTGCTTTATGAATGAGTTTCTGGAGATGGAGTGGGGCTCCATGCAGCAGTTCCTGTACGAGATCTCCAATCTGGACAGCGTGAGCAACGCAGTTGCTTTCGAGGGCTACATCGACTTGGGAAGGGAGCTCTCGATCCTGCACAGTCTGCTGTGGGAAGTCATGGCCCAGCTAAGCAAGGATGCTATCATCAAACTTGGACCATTGCCCCGCCTTCTAAATGACATCAGCATGGCCCTTCGTAACCCTCACCTCCAGCGACAGCCAAGCCATCAGATGGACAAACCGCctccagagagacagacagacaggctgCTCTCCAGGCCCAGCTTCAACAGAGGTGTCTCGTCTGAGTTCCAGAACCTCATGATGAGGGACCTCAACAGTTCAGTTGAGATCACTCGCCTACCCTCTCCGACCTCTGCCATGTCCAGCGGCGCTGCCCCTCAGTCCCGGGCCGGGATGGGGGGCTTCGCGGATCGCGATCATCCTCACCGAGCCTCATCTAAAGACGTTTTCTATGTCGCCCGTCCCCCGCTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGTTCTGATATCACTGATCCGGACCCAAAGGACTCAAGAATGAACAGCGTCTCTAACCTGCAGTCTATGGGGGACATGCTCAACTCTTCCCAGGCCTCGATTGCCGGCCTCGGCAGCTACGGTGGGCTCGCGGGCTTGGGAGGAGGCCTCGGTGGCCAGCTGCGCGCCGGAGGGCGTATGTCGGCCGGATCCGGAGGTTCCAGCATGTCCGGGGGTCTGAGGTTGAGCCAGCTGAGCCAGATGGGGACCACCACCGACTCTCTgtcccagcagcagcagcagcaagcCGCCGCTCTCCGCTACCCCCTCTCCTTCCAGAACCCCCTCTTCCACCTGGCTGCTGACGGCCCTCAGCTTCACCACCAGCACAGTCGAGCTCAaccccctcctcctctcctgcTGGCCCCGGAGCCGGATGCCTCTCACCCCACTTACATCCCGCAGTTCGCCCACGGCGGCTTCTCCCGCAGCGAGGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGTCAGCCGAGCATCATTCACTCGCACAGCTACAGCGACGACTACAGCCGCCATAACCAGAGCGAATACGGCCGACGTCAGATCTCCATGCACATGCAGGAGCAGCAGCAGATGGCAGGCATGGCATCACAGACCGGCACATCTCATTCATCGCTCGCCACGCCTCCCTCCACCGTTCAGCCTGTCCGTCAAagctccatggctcctcccacACAGCGCATGAAATCGCAACCCTCGCATCAGCTTTCTGTGAGTTCTGCCGCCGCCGCTCCTGCGGGCAAAACCCGGCCCCAGAGCGGAAACCTGCTCCAGTCCCCGGAGTCCGGCTTCGGGGGCCGGCAGCAGGGCCCTCGGCAGCAGCTGTCCGTCAAAGACAGCACCCCGCCTGGCCTGCCGCATCAGCAGAGCTCCACCAGAGAGAGCCAGGGATCGCAGGGCTCTCAGGGCGGGACGCCGCAGTCCACGCAGCAATCCAAATCCCATCAGGAACGACAGCAGATCCAGCAACAGCATCTGCTCAAGCCTACCATGAGCAAACAGGGCTCTTCCCAATCTCCAACCACCCTCAACCCCCCGACCCCTGCCTCTGAACGGACGGTCGCCTGGGTGTCCAACATGCCCCATCTTTCTGCTGACATAGAGAGCTCCCGCATCGACCGAGAGGAATACAAACTCAAGGAGTATTCAAAGAGCATGGACGAGTCGCGGCTGGACAGGGTGCGTGAGTACGAGGAGGAGATCAACTCTCTGAAGGAGCGTCTGATGATGTCACACCGCAAGCTGGAGGAGTACGAGAGGAGGCTGTTAACTCAGGAGCAGCAGACCAATAAAATCCTGCTGCAGTATCAGAGCCGACTGGAGGACAGCGAGAGGAGACTGAGACAGCAGCAGATGGAGAAAGACAACCAAATTAAAGGAATTATTGACAGACTCATGGCTGTGGAAGACGAGCTGAGGGGGGGGGTGGTGCCTGAGCACAAGCCCAGGATGTTCGCAGACCAGGAAAAGCAGCTTTCCGCCTTGGGTTCAGCAGACCCCGGTGTGAGTTTTGGAGGAGAATTGACCAGCGCTCCTGGCGTTGTCGGAGTCTCCCAATCGGACAAATCCTCCACCCGATCCCCCCTGAATGGAATCTTGTCCTTCCCATTAGCCTCCCCTCCTCATTCCCGTCCTCACGCACAACTCTGGCCGAACGGAGAACTCTCCGGCAACCAAAAATCAGCAACGGCATCGAGGGCAAGTTCGGAGGGGGAGCAGGTCAATAACAACGCTGACCAAATTTTTTAGGAATTCAGAAGAAAACCTCACGTCCTTTGTCATCCGCATTGAAGGATGAagcttcagttttattttacgCATTAGACTGAGGACAAGTGGGAGGCAGGACACACCATTACTTGCACCACCCAAAACAAAAGGGCTCTCCATTGGATCCGATACGTTATTCCAAAATCACGTTTTCTTTGGATCAAAGTTAAAAGCCCCTTGCACATACAGTACCTCTGCCACCACAAGTCATCCAAACCACTGGAAAGTGCTCAGTTCAGGTTCCACGTTTTTTTGACTGAGCTCCTTCGTATTGGGTAAAAAATTCTAAGAAGCTGAGAACGACTCTAGGAACGGTGGGCAAACAAACCACACTTACGTCTCAAAGTGTATAAAGTTCGAAATTTGACTCACACGCAAGCTTTGTCTTGGGGATTCTGTCATGTCGTCTGGCTTCCCTAGTGCCTTTCTGTATCTCCTGACAGGGTTTTCAAACAAACGCAAGAATAACGACAGCAGAATTACAGAAATGGTTGTTCAAACACCGCTCTCTTCTCGAGATTGCTCACTTAGGAGAGATTGATGTGTTCTTCTGCCTCAATGTAGTGCTGAAAATGTCAAGCTTTGGAATCCGACCGTGGCTCGGGTTTTTTGTGGACAATGTCTGGAAAGTGCTTGTGGTCTTTGAATTGCCTCACTAGACTGAACTTGTGCAATGTTTTCTCTTCTCAATCTCAGAACCTATGTGTATTTAACTGGTGCTATGGATTCTCAAAGCATTGCTCTGTGTCACATCACCGCCTCCCATTCTGTCATTGTCCTAACTGTTCATATGTGTCTTCGTCCTCCCATTTATCTCCTTACAGGCCGATTTCTTTCAGTGTGTGTCTGCAACGTGAGGTGAGCGTGAGGTGATCTCTGTCAGGTCAAAAACCTTTTGTCTTTTAACTAAACAAGATGGTAGGCCAGAATGCAGTCGTTCTCATAGGGTTTTTTTATACAGAAACGTTTTCCTTAAAATAGACATCATGTGAAATGAGCTGATAtttaagctgaatttttttgtgtgttttttggttttaaagtcaacatgaaagcCAACTTGACAGCAGCCAATTTTCTCTCcataatgtgatgtttttgaGAACAATAGgaagaatatattaaaaatggatGATATATGCTAGAATGAAGGCTGATGCCtaaaaaaagagttttctgAAAAGAtagtatttctttaaaagattataaaaacaaacctattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataataatatgcatgcacCAAATAATCATCAATAAGACGACAAAGAATGTAAAAAGTAGTCAATGATTCACACCAAATAATcattacatttgcattcatGGATTTGGCGGATGCTTTTATGCAAAGCAACTTACATTTAggttttttgtttcagttcacACATTCTCTGTGAATCAAACCCATGGCCTACGGTTTAAGCTTAATTGCGAATAATAAGTTATAAGTAAACAGGgtccattttgttttcatgttgactttaaagttGCTCAAGCATCTCTAAAGCAGTAGTTTTTGGTGGTGTTGAATGGTCATTTTAGGGATCTTGTTAGATAACAGATATGGTTtgtaaaataatcagatcttaaGTACTGTACAGAAATATTGCTAGCTATAATTCCTCATTGGAGTATCACTGCCATCTGATACTGATTGTATACCTCATCGTTCactacagtttttgttttattgtttgttttatgattaattGGTTCATTGTCATGTTTCTACAGCCTCAAGACATTCACGTGGCTTTGCTGATACCAGTCATTCATTTGTAACCCAATTCATTTGTTGATTGCCTTGTTGTCGCATTATAATCTACTCAAGTTCTGTATGTAACACAGCTAAACCAATACAGCTGGCCTAGATGAGAGCGAGGAGATTTAAGTTGTAActgcacaataaaaacactgagcTGTACTGTAATATTTATAGATTGGGAAGGCACTAGAGAGGAGAATGGACTGATTGCCATTTTAGCTTTTAAGAGCTTCGAGGGCTATCTTTAAGTGACTTCTACTccatttagtaataataaacaggcAATTTTGTTTATGTCCCAAAAGCGGTTGAGAAAAAGTGGGATAACAGGGTTATCAGCTGATAAATGTGCCATGACATGAATATACCTCAGACGTAGAATCGAATGACTCAGGTAAACATTCAATTGCCTCACAGTTTAACGTAAACtggatagaaaaaaataataattttaagttCAACTGCCTGTTTTGGCAGTTAGTCCATTTCTTCTCTGAGATTAGTAGCAGTGATTGGTCAGCGGCTCATCAAGCACCTCCTCTTTTCCCTGCATCTCCAGCCAATCACAAAGCTTCATGGAGGACAATCTGGAACCTAATTGGAGGCCTCACCTTGGACATTCTTCAGGTTGGCCAGGTTTTAATTCCAGGGCGCTGTCACGCGATTCGGTTGGTTGACAGAGGAGAAACTGAGGCTTTGACCCAGTGCCAGAGCCgatccaaagaaaaaaaaaaaaataggttccCTTCCTCTGACGTACCCTCTCTCTGATCAAATTCAATATGATGACCGTTTGGGATACTTAACGTCTACCAGATGGCTTCTGCGTGCCTCTTGACGGCACGAGAGATGTCGCATGCAGCGCAGTGGTTCGTTGAGAGAGCTGGAGAGGTTCTGAGGATCAGATCAATCTCAAaggtgctgttttttttaggttCTTTACTAACTAAATGTAGGATATTGAACAATCCTCTACTTCTTCTCATTATGATCTTCATATGCCACATTAGCTCTGCCTGTCATGCCTGCCTGTGTCTCAatcatgtcttttattttggggAAACTGAATATgcacagcctttttttttcctcaagagACGCTAATTTGTCCTTCAGCGAATTTGATAAGAGGCTGGAAATATCCGAACTTTTGTTTCCTGGTGGTTTTCTACTTTTTGACTGGACCTCACCCAGATGAGATCACGTATTTACATGCTGGTAATGTGAGACAAGAACTTGAAAAGTCTGAAAataatccctttttttttttaatccgtgAATTTATGTGACAATCTCTTTGCAAAGCAAAATCAACAACCTGTTATTTTACCTGCTCCCCCTTCCCGCACTTTGCTATGTCCCGGATCCTCACCGACTCCTTTGTATGTGAAAGAAAGATGgattcttttacttttttttaaattctctttGGTTTTGCTGTGGAGTTCTTGATTTTATGGACGACATTGTTTGGATGTGGAATCCTCTTATTTAGAAATCTGGCGATCGCGCGTTTGCAGGACGGTGGGTAGTTTTGCGAAGCCAAGttgctgttttaaatttaaatttatttcctTGTTTGGATGCCATTTCCGGGCAACATGGACATTTCTCTGCTTCCTTTTTACACCActagacaaaaatataaatgttgagAGATCATGCAGGTTAAATAATGTTGTGGGTGACTGTGTGTATATAGagtgtgtgtacagtatttatgtatatactgGATGTATGGAtggttatataatataaatataaatataaatatatatatatatacatacatgtattttgTACATAAGAAATGTTTGTATATGCAGTGTACAGAATGTGTTCTTTTACACCAATTTCTCTTTTCCCGATatgtggaaaaagaaaaagcataacAGAACTTTGTGGGAATGAAAAACTCGCGTTGGCGACTCGTCGGCAGAGTTATTCGAAGCACTTTTCGCTCAGGCTGATTGTACACAGTCTGAAACCTACAATGCATCGCCGTGAGTCCGCCACGCATTTTGCCAGTCTGAAGCTTGCACTCATTTTCTCACTGATTGAGGTGTTTTGTAACAGATTCTGGGTGACAAAGCAATGcttgtacataaatatataggcTTAATACCTACCGTATGTTTGCATATATCAGCTTTTCAAGAGTCACCTGCTAATCTTTGAAGCTTTTGCATCTCCACTTGCTTTCGATTCCAATGCAGTGCCGTGCGTCAGATGAGGTTTTTTGGATCGCTGTAGAAGGTCGATCTCGTGAGAAGACGTCCCCGTTTTATTCTGCTGATCTTTTGTATGGCCTGATGCTTTATTCCTCCATTACTTGCCTAGCAACTCTTCCATGCAAGTAATCGCTTCTTTGTCCCCTGTAAATGAATGGAGTTCCCATGATGTGCCTCTTTCTAATAAACTTCAGTTGGTCTCTGTCAGCCATAAGCCAATCACAGTCATCTTTCTTGACAAGCCATAAGCCCCGCCCctaaatttccatttttgaaaAGGGCAGACACTTGGgaatttgatttctttttgtatatattatattaatagaaaGAGTGGTATGTCAGAGTGTATTGCTGATGTTTTTGGATTTGTTATGAATGTTGATATTCTGGTTATtgaattatgattattattgtaataatataatgactGCTGTTATCATTTCATCATTCTTTAGTTTATTCAATACTGTTAAagactttcatttctttttgaataaatcGGAATTTATATTTTTCGGGTGGGCTAATTATAGAAATGAAATCAATTAAACAgatgaataaagaaatacattctTATTGAATTCA

Function

GO: NA

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168880 lncRNA downstream 32584 18992862 ~ 19063171 (-) True G114399
TU168882 lncRNA downstream 53989 19012655 ~ 19041766 (-) True G114401
XR_006252756.1 lncRNA downstream 107829 18985829 ~ 18987926 (-) False LOC122360016
XR_006252755.1 lncRNA downstream 107833 18985403 ~ 18987922 (-) True LOC122360016
XR_006252754.1 lncRNA downstream 107836 18985403 ~ 18987919 (-) False LOC122360016
TU168924 lncRNA upstream 10695 19206119 ~ 19262830 (-) True G114430
TU168954 lncRNA upstream 85004 19280428 ~ 19283527 (-) False G114458
TU168955 lncRNA upstream 85004 19280428 ~ 19283527 (-) True G114458
TU168959 lncRNA upstream 97569 19292993 ~ 19294087 (-) True G114462
TU168929 lncRNA upstream 110082 19305506 ~ 19307497 (-) True G114433
XM_043261154.1 mRNA downstream 1017 19078953 ~ 19094738 (-) False smg5
XM_043261153.1 mRNA downstream 1017 19078953 ~ 19094738 (-) True smg5
XM_043260300.1 mRNA downstream 20945 19056157 ~ 19074810 (-) False paqr6
XM_043260299.1 mRNA downstream 21556 19056157 ~ 19074199 (-) True paqr6
XM_043262108.1 mRNA downstream 115129 18977536 ~ 18980626 (-) True rbm8a
XM_043260178.1 mRNA upstream 2427 19197851 ~ 19211183 (-) True phf1
XM_043260179.1 mRNA upstream 4449 19199873 ~ 19211186 (-) False phf1
XM_043261885.1 mRNA upstream 48518 19243942 ~ 19249649 (-) True dnase2
XM_043260230.1 mRNA upstream 63900 19259324 ~ 19261794 (-) True LOC122359968
XM_043261313.1 mRNA upstream 221538 19416962 ~ 19421094 (-) True cd22
TU168710 other downstream 274667 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 274667 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 274667 18815216 ~ 18821088 (-) False rpz
TU168665 other downstream 397439 18693912 ~ 18698316 (-) False LOC122360940
XR_006252818.1 other upstream 221538 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 971371 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 1246541 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 1246541 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1456553 20651977 ~ 20653574 (-) True G114901

Expression Profile