RNA id: XM_043260795.1


Basic Information

Item Value
RNA id XM_043260795.1
length 2158
RNA type mRNA
GC content 0.54
exon number 17
gene id brd9
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27242882 ~ 27258010 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCTGCTAGCGTTGTTGTCGCTGTTGCGGCGGCTAGACAGGAATACGAATTCGGCGAGATTTTCCTCACGTAAATAAGCGCAGAAATGGGGAAGAAGCACAAGAAACACAGGCCCGAGTGGAGAAAGGTCGAAGGAGACTATGAGGACAAACCTCTGGATAAACCCTTGAAGTTGGTGCTCAAGGTGGGCGGCAGCGAGGTGACCGAGCTCTCCGGATCCGGACATGACTCCAGTTACTATGACGACCGCTCTGACCACGAATGGGAGCGAcacaaagagaagaagaagaagaagaagaagaaatccgagaaggagaaggagaagtaTGGAGATGatgaggagaggaggaggaggaaggaggagaaaaagaaaaagcgtgAGCGAGAGCAGTCAGAAAGCGCTGCCAGCGCACCGGTGGAGCCGTTCACTCTGCCGAAGCCCGTGGAGGTGCTTCCAGAGGAGAAGAAGCGCAAGCGGGACAAATTCGAATCGGAATCGGAAGCGGATGAGTTTCATCCCGGAGTGAAAGTGGAGGTGGAGCAGCAGGCAGATCGGCCCGTACGAGCCTGTCGAACCCAGCAAGaaAACGAATCCACCCCTCGCCAGCAGCTCCTGGAGCATTTCCTGCGTTTGCTTCAGAGGAAAGACCCGCATGGCTTCTTCGCCTTCCCGGTGACCGACGCCATCGCTCCGGGGTACTCCATGATAATCAAGCATCCCATGGACTTCAGCACGATGAAGGACAAGATCGACGCCAACGAATACAAAACCATCACGGAATTCAAgGCAGACTTCAAGCTGATGTGCGACAACGCCATGGTTTACAACCGGCCGGAGACGGTTTACTACAAGGCCGCCAAGAAACTCCTCCACACGGGATTCAAGATGATGAGCAAAGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTCTCTCAGCAGGCTGCCATTTTGGGAGATGACGACATCGCGCCCGAGGAGCCGGCGACGGAGATCCTGCCCATCCACACGGAGTACCCCAAAAAGTCCAAAAAGCAGCCTGTAAAGGAGCCCATCATCAGTGATCTGTACGAGCTGGAGGGCAACGCCTGCAGTTTGACGGACAGCACGGCGGAGGAGCACGTGCTGGCGCTGGTGGAGCACGCCGCGGACGAGGCGCGGGATCGAATCAACCGCTTCATGCCAAACTCTAAGATTGGATACCTTAAAAAAGACGCCGAAGGGTCCCTCATCTATAATGTTGTGAATCAAGATCCTGAAGCAGAAGAGGAAGAGACTCATTCTATAGATTTGAGCACTTTGGCGAATAAGCTCATCCCTGGACTGACGTCGCTGGGGTTTAAAGACGACAGGAGACACAAAGTGACGTTCCTGAGCAGCGCGTACAACACTCAGACGCTTCAGAACAACTCCGTGTATCCCGACCTGCTCCCCGAGGAGATGGACACGCTGTACTCGGCTTACGGAGACGAGACCGGTGTCCAGTGTGCTCTCAGtCTGCAGGAGTTTGTTAAAGGTTGTGGGAGTTTCACCAGGAGACTTGTGGATGATCTTCTGGATAAAATGACGGCGGGCGATCATTCGAAAGCCATCATCCAAATCCGTCAGAAAAGAAACTTGCCGATCGACGACACTAAATCTAGTTTATGTGACATGCCGGGGCCCGATGGAGCCGGCGTGGAGTCCGGGTCGGTGCTGGACTTCATGTCCATGAAGAGCTACCCGGACGTGTCTCTGGAGATGCTCAGCACGCTAGGTAAATGTGTGAAGAAGGAGCCGGAGCACGAAGACGGACATCAGCACTTCGAGGACGCCGCTAAGCTCCTGCAGGAGTTTCAGGACGCGGCGGTGGACCGAGTCGGATCCCGACCCTCGTCCAATCTCTCGTCTCTGTCAAACACTTCAGAGCGGGAGCAGCACCATTTAGGAAGCTCGCCTCATCTGGGCGTCGGAGATCAGACAGAGATGGTTCAGGACCCGTACGAGTTTCTTCAGTCTCCAGAGCCTGGCTCTACTGCCAACAGCTGATGGGACGCGCTGTAACGATCTGCTTTTCTAAAGGACTGTAAGCTTGTACAGATTCACTGCATCAcgtctttgtttttaaataaacgctcTGTGTACGATTCTCTTTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG:

id description
K22184 BRD9; bromodomain-containing protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172405 lncRNA downstream 1791 27240615 ~ 27241091 (-) True G116711
TU172404 lncRNA downstream 2743 27238986 ~ 27240139 (-) True G116710
TU172385 lncRNA downstream 29269 27153346 ~ 27213613 (-) True G116696
TU172391 lncRNA downstream 85392 27155095 ~ 27157490 (-) True G116700
TU172333 lncRNA downstream 368522 26817032 ~ 26874360 (-) True G116666
TU172416 lncRNA upstream 41484 27299494 ~ 27307565 (-) False G116721
TU172415 lncRNA upstream 48609 27306619 ~ 27307565 (-) True G116721
TU172418 lncRNA upstream 49766 27307776 ~ 27308221 (-) True G116723
TU172429 lncRNA upstream 109822 27367832 ~ 27371377 (-) True G116730
TU172462 lncRNA upstream 114519 27372529 ~ 27375040 (-) True G116748
XM_043260799.1 mRNA downstream 143 27229786 ~ 27242739 (-) False zdhhc11
XM_043260800.1 mRNA downstream 143 27229786 ~ 27242739 (-) False zdhhc11
XM_043260798.1 mRNA downstream 143 27229786 ~ 27242739 (-) True zdhhc11
XM_043262028.1 mRNA downstream 14317 27214091 ~ 27228565 (-) True LOC122361070
XM_043260087.1 mRNA upstream 117891 27375901 ~ 27381789 (-) False si:ch211-269k10.4
XM_043260088.1 mRNA upstream 117891 27375901 ~ 27381789 (-) True si:ch211-269k10.4
XM_043260399.1 mRNA upstream 280383 27538393 ~ 27558972 (-) True LOC122360076
XM_043261498.1 mRNA upstream 355763 27613773 ~ 27621631 (-) True LOC122360683
XM_043260097.1 mRNA upstream 364619 27622629 ~ 27627516 (-) True LOC122359885
TU172373 other downstream 244523 26994167 ~ 26998359 (-) False LOC122360878
TU172354 other downstream 287048 26954220 ~ 26955834 (-) True G116677
TU172337 other downstream 366272 26874398 ~ 26876610 (-) True G116668
TU172263 other downstream 429908 26810317 ~ 26812974 (-) False G116632
TU172261 other downstream 429973 26810317 ~ 26812909 (-) False G116632
TU172454 other upstream 100697 27358707 ~ 27360829 (-) True G116745
TU172389 other upstream 262180 27520190 ~ 27579864 (-) True LOC122360079
TU172557 other upstream 365417 27623427 ~ 27627660 (-) False LOC122359885
TU172608 other upstream 449706 27707716 ~ 27727944 (-) False G116836
TU172609 other upstream 534694 27792704 ~ 27804770 (-) True G116836

Expression Profile