RNA id: XM_043260835.1


Basic Information

Item Value
RNA id XM_043260835.1
length 7410
RNA type mRNA
GC content 0.49
exon number 29
gene id ptprub
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24626594 ~ 24808670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCCTGACGTCAGTTTGAACAGATCGCACTGCCCCCGTATCACTTCACGCGACTCTGAACTGAGCTTCGGCTGGATTTCGGGAATCGATGAACTTCACCGTCCAAACTACCGGAGCCACTGAAATGATTTCGGCTTGTTTTCCCAACTGGACTAACAACGTAAAATGAATACCTGCGCGTTTCTCTTGATCCTGGCCGTTCAGATTCACGCCGACAGCGTAGAGGGACCAACAGCGGGCTGTACGTTTGATGAGGACTCCGACCCCAGCCTGTGCGAGTTCAGCCAAGGGGAGGAGGATGACTTTGATTGGCAGCTGTTCCGCGCTCACGCCTCGCCACACTCCACCTCTGATCTCCTGCGCGGCTCCTACATGATGGTCAACTCCTCCCAGCATGCAGCGGGGCAGAGGGCTCAGCTTCTGCTACAGACGCTAAGTGAAAACGACACGCACTGCGTGCAGTTCAGCTACTTCCTGTACAGCAGAGACGGCCACAGCCCAGGGGCGCTGCGGGTTTACGTGCGGGTCAATGGTGGACCGCTTGGTATTCCCGTGTGGAATGTCTCTGGCTCGCGTGGACGACAGTGGCACCAGGTGGAACTGGCGGTCAGCACTTTCTGGCCAAATGAGTACCAGATATTGCTGGAGGCGACTGTGGACCGTAAAGGCTACATTGCAGTCGATGACATACTCCTGTTGAACTACCCCTGTTATAAAGCCCCTCATTTTTCTCGTCTGGGGGATGTGGAGGTCAACGCTGGACAAAACGCCACTTTTCAGTGCGTGGCAGCTGGACGTCCCAATGAAGCAGAGAAGTTTCTGTTGGAGCGGCACAATGGTGAAGTGTCTTCAGGTGGTTCTGTCAAGCACTTGGGCCGCAACCGCTTCTCATTGTCCTTTCAACTGGAGGACGTCCAGAAGCCAGAGCAGGACCTCTACCGCTGCGTCACGCAGTCCTCCAGAGGCTCCGGCGTTTCCAATTTTGCTGAACTCATTGTCAAAGTTCCCCCATCTCCCATTGCTCCGCCCCAGCTGTTGAGAGCGGGCTCCACGTATTTGATCATTCAACTAAACACAAACTCTATTCTGGGCGATGGCCCCATCATCCGCCGGGAAATCGAATATCGGGCCAGCCAGGCACCTTGGTCAGAGATCCTCGGAGTTAACATGGTTACCTACAAGCTCTGGCACCTGGATCCAGATACAGAGTACCATATCAGTGTGCTGCTCACCCGGCCGGGCGAGGGTGGGACGGGGCCACCAGGACCACCTCTCATCAGCAGAACTAAATGTGCAGAGCCCATGCGGGCGCTGCGTGGTCTTCGAGCCTCGGAAATCCAGTCCCGGCAGCTGACCTTGCAGTGGGAGACTCCGGCCTTCAACCTGACCCGCTGCCACACTTACTCGGTCTCTTTGTGTTACCGCTACACGACCGCAGGGGGAGGCGGCGGGCACAACACCACAGTGAGAGAATGCCTGGCTGTGGAGCACAACACTTCACGCTTCACCCTTAGAGATCTGCCTCCTTTTCACACCATCCAAATACGCCTGGCACTCGCCAACACCGAGGGCAAGAAGGAAGGGAAGGAGGTCATGTTTCAGACTGAGGAGGACATTCCCGGAGGCATTGCTCCAGAGTCTCTTACCTTCACGCCGCTGGAGGATATGATCTTCCTGAAGTGGGAGGAGCCGGTGGAACCAAACGGCCTCATCACGCAGTATGAGATCAGCTACCAGAGCATTGAATCATCAGACCCTGGGATCAACGTTCCAGGCCCGAGGCGCACCGTATCCAAACTGAGGAACGAGACGTACCATATGTTCTCCAACCTGCATCCTGGCACCACTTACCTGATCTCTGTTCGGGCGCGCACCGCCAAAGGCTTCGGCCAAACGGCTCTGACTGAGATCACCACAAACATCTCAGCACCTACATTTGATTATGGAGACATGCCATCCCCTCTGAGCGAGACTGAAAGCACCATCACAGTCCTGCTGCGTCCGGCACAAGGCCGAGGAGCTCCAGTCAGcacataTCAAGTTATTGTGGAGGAGGAAGCTGGTAGGAAGGTGAAGAGAGAACTGGGCGTTCAGGATTGCTTCCCCATTCCAACATCTCACGGTGAGGCTCAGGCCCGTGGAGCTCCACACTACTACACAGCTGAACTTCCCCCGAGCAGCCTGCCCGAGGCTACACCTTTTACTGTGGGTGACAACCACACATACAACGGCTACTGGAACAGCCCGCTGGACCCCAGGAAGAACTATCTCATCTACTTCCAGGCCATGAGCAACTTTAGAGGCGAAACAAGGATAAACTGCATCCGCATCGCCCGTAAAGCTGCCTGTAAAGACCATCAGCGAGCTCTTGAGGTCACACAGCGCTCAGAGGAAATGGGGCTCATTCTGGGAGTGTGTGCTGGTGGGCTGGTGGTCCTGATACTGCTACTCGGGGCCATTAtcataatcattaaaaaaggGAAGCCGGTGAACATGAATAAGACCCCCATTACATACAGGCAGGAGAAGAGTAATATGATGGGCTCCATGGAGCGCAGTTTCACTGATCAGAGCACTCTGCAGGAGGACGAGAGGATGGCCTTGTCATTTATGGACACCCATACTTGCAGCACTCGCAGTGATCCACGGAGCTCTATGAATGAGTCCAGCAGTCTGTTGGGCGGATCGCCTAGACGTCAGTGTGGCCGAAAAGGATCGCCCTATCACACGGGTCAGCTTCATCCGGCTGTGCGAGTGGCTGACCTCCTACAACACATCAACCAGATGAAAACCGCAGAAGGTTATGGCTTTAAACAGGAATATGAGaGCTTCTTTGATGGCTGGGATATCAATAAGAAGAAGGATAAAACTAAGGGAAGGCACGATACTCTGATGGGTTatgaCCGTCACAGGGTGAAACTGCACCCGCTGCTTGGTGATCCCAACTCTGACTACATCAATGCCAATTACATCGATggATACCATCGATCCAACCACTTCATCGCCACTCAGGGGCCCAAGCAGGAGACAGTGTATGATTTTTGGAGGATGGTTTGGCAAGAAAACTGCTTTAGTATCGTCATGATCACCAAGCTAGTGGAGGTGAAATGCTGCAAGTATTGGCCAGATGAGTCAGAGATGTACGGAGACATTAAGATCACACTGCTGAAGACCGAAACACTGGCGGAGTACACAGTGCGAACTTTTGCCCTGGAGCGGAGAGGATACTCCGCCAAACACGAAGTGTGTCAGTTTCACTTTACATCATGGCCTGAACATGGAGTCCCGTACCATGCCACGGGTCTGTTAGCCTTCATCCGTCGGGTCAAATCCTCCACACCGCTCGACGCAGGGCCTGTGGTGGTCCACTGCAGTGTTGGAGCAGGCAGGACAGGCTGCTATATCGTGCTGGATGTAATGCTGGACATGGCGGAGTGCGAAGGAGTGGTAGACATCTACAACTGTGTGAAGACCCTCTGCTCTCGTCGTATCAACATGATCCAAACAGAGGAGCAGTACATATTTATTCACGATGCCATCCTAGAGGCTTGTCTGTGTGGGGAGACGGCCATCCCGGTAAACGAGTTCGCCCTGGCTTACAAAGAGATGCTGAGAGTGGATTCTCAGAGCAACTCTTCACAGCTACGAGAGGAGTTCCAGACGTTAAACTCTGTGACTCCTCATCTGGATGTCGAGGAGTGCAGCATTGCCTTGTTGCCACGAAACCGCGAGAAGAACCGCAGCATGGATGTTCTCCCACCTGACAGGGCCCTTGCTTTCCTGGTGACCACTGAGGGAGAAAGTAACAACTACATTAACGCAGCACTGATGGATAGTTTCCACCGGCCTGCTGCCTTCATTGTGACCCCTCACCCGCTTCCCGGCACGACCTCTGACTTCTGGAGGCTGGTGTTTGACTACGGCTGCACCTCTGTGGTCATGCTGAATCAGCTGAACCAATCAAACTCTGCCTGGCCTTGTGTTCAGTACTGGCCTGAACCAGGTCTTCAGCAGTATGGTCCTATGCAAGTGGAATTTCTGTCCATGTCTGCAGATGAGGACATCATCACCCGGCTTTTCCGGGTCAAAAACGTAACAAGACTGCAGGAGGGTCAGCTGGTCGTATGCCAGTTCCAGTTCCTGCGCTGGTCCGCGTATCGTGACGTGCCTGACTCCAAAAAGGCCTTCCTCAACCTGCTGGCCAGTGTGCAGAAGTGGCAGAGGGAGTGTGGGGAAGGTCGTACAGTAGTCCACTGCCTGAACGGCGGTGGCCGCAGCGGAACGTACTGTGCCAGCAACATCCTGATGGAGATGATCCAGTACCAGAATATGGTGGACGTCTTCTACGCCGTCAAGACCCTTCGTAACGCTAAGCCCAACATGGTGGAGACACTGGAGCAGTATCGTTTCTGTTATGAGCTGGTTCTGGAATATTTGGACTGCTTGGAGGTCAGATAGCGGAATCCCCCCCCTCCCAATCCCACCATGCTGACCTCACTGCATGGAGCAGGACCATCGGCAGGCTCACTCTCAGCCCCCCTATCACCTCTGCTTACCTTCTTACCTTCTTTCTGCCGTCTAACCCAGATCAAAAAGCCGAAGGAAGAAGACGGTACAAAAAAACGCGGAGTAGAGTTTTCTGCCTTTTTACCCCAAACATCTAAATATGTTCACCTTCCTGTGTCAAGGCAGTTTTTTCAGTTTAGGATATTTTCAGCTTATTTTCCTCAGAACTGTGAGCGATCCCAGAGCCTGGCTTGGTGCGGTGTGGTTGGTGTAGCTCTGCTCGCAGAGATAGTGGGCCGTTTCTAAAAACGGCAGCTTTACTTTACACCTGCCTGTTTCTCTCTGGCTGGCTGGACTGAAGAGCAGAAATAAACATCACTTGGAGAAGATCTCTTCATGTGCGGCTCGGTGGAGCTGAGAGTCGTGCGTCTTTACCATGGCTCTTAAAAGGAGTAAAAAGCGCCAAaaggacaaacacacacatgcatgcacacacacacagatccaaCCAGCAGACAGCTTTCCATCAACTGCCTATCAAGACGCCGATGCCTCTTCAACGCTGTTCCACCAACGTTTACCCTCATGGGTACTTTTCTCTGAGGATTGGTATCATCGGAGGCGGAGTTTATTACTATATATGGTGCCATATGTCTCAAGAGGAGATTGACAGGAGAGTCACGTTGCCCCACTGTGGCTTTCCTATCTTGTGGTGACTGTTGTCTTTTTTCCTCTCACTTGTATATATACTTAACGTCTGCTGGAAATCTCTTACGTCTTAAGGTGCAAGTCTCAAGTGCTAACAGTGGCCCTGTGTGCTTAAAGCAAAGGAAGTACATTAACAAGGTCCAGACGTGATGGCATTCTAAAGCTTGCGGTGGATTACACCCTGACCTTTATCCTCTCACTCAATGGTTTTGAGCGAGCGCAGTTAATAGTCTTTTTACAACGGCGCTGCAAAACGGGATCGGAGGCAAAACTGTGTCAGAAGTGAGGAGAAAGGGACCAAAAGGAACATCGGAAATCTTCTTCTTTTCACTTGTAACTATTTATCGGACTGACTCGTGTTCTTTGAGTGGATTTGTTTAACAATTGTGCAGCTTGGCTTGTACAGCTGAATCCTGGGCTCAAGATTTTTCAAAGCAtttctttgtttacatttacagtcCATTTCTGTTGCATTGCAGTATGTGATGggcttttttttgctgttttaatacACAATGCTTTGTCATCTGATTGTCATGAAGTGCGCATTTCATGAATATGAAACTGTGGTGtctgatgatgttttttttatcgtCAGAGGTATAAATCCGATGTTAGCTAGTcaaatttctgtcattttggCCTTTCACACCTCAGAGGTCCATTATTAAAGGAGGACGTTtggtatattaaaaaaaatcgcTTTTGCTCCACTCCTATTGAGCGGCAGgttattttatgctattttaattatttcatactGCAGTtacactttctttttaattacgTTTTgagatttacattttgtttccaAAAAGTAAAAGCATATAAATCTGGCTTGTAATCCTGATTATATGTTCCCCAAAGATTGGTAACAGGGTTACCCAAGAATTTTccatagaaaatatattttaaaaaagcttatgAAAAAATTAATGTGACCTTCTGAGGGTGAAAATCAACCTTTATTCACTGTCTGTTGGTTGAAAATAAGTAAAAGTGCTTTAGGctgtaatttgtaattaatttgtggAAGGTGCCAGAAACTTTAGTGCAGTAAGTAGAACTGACACCCAGGAGTACAGTGATAAAAATACCAAACTGTATTCACCGCCATTGAATTACAGTAGTTTAAACTaaaagcactaaataaaatggTATCCACATcagtattacacacacacatctctcaaATTGTTATGACCCCCAACTGTGAAATTGCCATATCAGCAAGATGCCAAGTTAGCAAACCACAGAGGCGTTTTCTCAATGATTACATTACTCCGCATAAACCATCTCAGATGTCAGCCTGCCTCGGTCTACACCGACTGACGGCTCACGACCGCATCAAATGACTGATAGTGTTAAAGAGACAGttctctcaaaaatgaaaaatgacatatTGTTCCAAACATTTGACTTGATTTCTACCGTAAAACACAAATGATTTGGGACAATATGATAatagagttttcatttttggataaactgtTATTCCAAGGGATCCAGAGAAAATATTGACTGAACAGATTCACCAAACCCCCCTTTGGACTTTCTTGGAAAGTGCCTGGACACTCAGATTTCAAGTGGAAAGTATGTGTACATATAGatgtatatttgtgttctgTGAATAGTATGTGAATAAAGTTTGTTCGGCCagatttaacaatttaaaagtaaCAAGAAAGAGTTGAATGTACTGTTTAAGACCTGTTTCCTGAATATGCCGCCAAAAGATCTGACACATGCTCAGTCAGCTGAGGATGATTTCTAAAAGCCATTCCAAAGTCGCCCCATCAGAAGGCCCATTTAGTCACTTTAAATCCCTCcaatgattgttttctttctttcttttataacCATGCTCATTCCAAAGACATTAGCCAACTTCTAATGGACTCTATAGTCACTTCTATGCTAATACTGCATAACTATCCCTAGTGTGTCACTATGAGAGAGGAAGGACTTTAGCCACTCTTGAAGCTGTTGAGCCAGGTCCTTGTTTTTTgtgagttttgtttgtttatttgtttccttCCAAGTGTTTCTGTATGATACTGAATGAACTGAAAAAGAACTGTGTTTTTGACCATGTGTTTGTGGGACAGGAAGAGGACACAGAGGCATATATCTCATGGGGATCTGAGGGTTGGGGTGGGACGGGTGttcaaacaacaataaaatgttcTAAGACTG

Function

GO:

id name namespace
GO:0007185 transmembrane receptor protein tyrosine phosphatase signaling pathway biological_process
GO:0001757 somite specification biological_process
GO:0030154 cell differentiation biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005001 transmembrane receptor protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171248 lncRNA downstream 153229 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA downstream 153229 24441327 ~ 24473365 (-) False serinc2l
TU171236 lncRNA downstream 258229 24364645 ~ 24368365 (-) False LOC122359997
TU171175 lncRNA downstream 438000 24187937 ~ 24188594 (-) True G115954
TU171157 lncRNA downstream 548727 24077631 ~ 24077867 (-) True G115939
TU171515 lncRNA upstream 12831 24821501 ~ 24823410 (-) True G116174
TU171520 lncRNA upstream 24866 24833536 ~ 24833958 (-) True G116179
TU171502 lncRNA upstream 26429 24835099 ~ 24835364 (-) True G116164
TU171572 lncRNA upstream 270597 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 368782 25177452 ~ 25178607 (-) True G116242
XM_043261016.1 mRNA downstream 175510 24442036 ~ 24451084 (-) True serinc2l
XM_043260526.1 mRNA downstream 195708 24372103 ~ 24430886 (-) False LOC122360159
XM_043260528.1 mRNA downstream 195708 24372103 ~ 24430886 (-) False LOC122360159
XM_043260531.1 mRNA downstream 195709 24374035 ~ 24430885 (-) True LOC122360159
XM_043260527.1 mRNA downstream 232189 24372103 ~ 24394405 (-) False LOC122360159
XM_043261009.1 mRNA upstream 27416 24836086 ~ 24839787 (-) True taf12
XM_043261006.1 mRNA upstream 31259 24839929 ~ 24846153 (-) True ctps1b
XM_043260492.1 mRNA upstream 84176 24892846 ~ 24906521 (-) False LOC122360137
XM_043260493.1 mRNA upstream 84176 24892846 ~ 24906512 (-) False LOC122360137
XM_043260491.1 mRNA upstream 84176 24892846 ~ 24905755 (-) False LOC122360137
TU171232 other downstream 298621 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 951296 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1016753 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1102212 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1692627 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 859149 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1571002 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1998450 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 2001647 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 2001647 26810317 ~ 26812909 (-) False G116632

Expression Profile