RNA id: XM_043260838.1


Basic Information

Item Value
RNA id XM_043260838.1
length 3870
RNA type mRNA
GC content 0.49
exon number 26
gene id rapgef5b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12155770 ~ 12203088 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGTGTGTAAACGAGCTTCGCACTTTTTCTGGTTATAGACGACTATCGATTACATGTAAACACCTGTTGGCCGACATCCACCGCTGACTTCTATGCGGGGAATCCGAGCTTTACGCCTCAGACCTGCGCTAACTTGTTCTGGACTCGGAGATGGTGGACGAGAGTCCGTCTGTTTCTTTTAAGGCTCTCGTAAGTAAAGTCCTCGAAGATCACAGGAGCAGAGCCGATCCTCTCTCACTGAAGAATGGCTCTCGGTTTAAAAAGAACCTGGAAGATATTGTATCTCAGAGGCAGCCACCTGAGTCCATCTGCTGTTCAGACGCAGGACAGGCTAGACACATGGCTTGCGTGAATAATGTGTCTTGCGCCGGCCGAGCTTTGAGGAACGCTTTCTTATCCAATGGCCAGGATAACTGGAAAGCACATGTTAAACTGGCAAGAATCATCAGGAGGACGTATATTGGCCTGGAGCTCGTGGAATGGCTGATGGATCGTTGTGAATTCATCCAGAACAGGACGGTAGCTTCCAAAATCTGGAACCTTCTCCTGGACTCGGGCATTCTGCTCTCAGTGGAGCAGAACAATGTATTTGAGGACTCCAGGTCTTTGTACCAGTTCACCTTTGAGGAATGTGAGGCCCAGAGCTGTGATTTCAGAAATCAGGTCAACTGGACGAATGCAGTACATCTGCTGCTACAGCTGGTCCCGTACGTGAAGCTCCGCGGCGGAACCCAGAAGCGCTATAAAGAAGATGCAGAGAAAACATCTGACGTTTGTAATCCAGTTCTTCAAATGAGAGCTTTGGAGCATCTCACTTCAACCgTGCAGAACGAACTGTTGGCAGCTTTGGCGCGCAAGGCACAATCTAAATCAATGATGGAGGAGAGCGGTCCGCAGCACAATACCAGCACTCCAGGATCCTCTCCCACTCCTGCTGTGCGCAAGCAGGGCCCTGGAGCTGCTGCTCGAGACAGAGAGGATATCAGCCGACTGGAGATGGTTCAGAGACTGGCCAAGGACGGGTGCCGCCTTCTACACAGCCCGCTCAGAGCTAACGAAAGGCCTGCTGAGCCCTCCAGTGACGCAGCAGTccgtgtgtgcgagagagagcgGAGCCACGAGGTGCTGCTGCCTCAGAGGACGACGTCACCGAGagctccctcctcctcctcctcctcctcctcctggaCCGGGAGGTACGCTGCCGTGCCCGCCGCCCCCGAAAAGGTTCTGGAGCATCTGCTGGGCCACCTGAGGCTGGATGAGGAGCAGAAAAGCCCGCAGAGCAGAGAGACAGAGAACCTTTTGGATGACTTCCTGCTGACCTACCCTGTGTTCATGTCCATCAGTGACCTGTGCCAAGCGCTGCTCGGGCACTATTGTTCAAAGAAAGGCAGGATGAAAGAGGAGGGGAGAGACACTCTGCTTAGGAAACGAAAAGTGCTGCACCTGCTGTCCCAGTGGAGCTCGCTGTGCCCAGACCTGCCCCGGGACGACGAGCACGCCAAACTCTTCCTCAAGACCCTGTACAGATACGTTCTGGATGATCTCTACGAGTATCCTTCGCTGGAGAAGGATCTGAAAGAACTTCAGAAACTTCTTCGGATGCAAAGGAGACACACGGTGGATGAATACTCTCCGCAGAGGAAGAATAAAGCCCTTTTCCACCAGCTGAGTCTGAAGGAGAACTGGCACCCCGTGAGAGGAGCTCAGAGGGACAGGAAGGAAGTATTGTGCCGTGTGTACGTGACCATAGACTCATACGTGAGTGTGAGGACGCACAGCGAGGTGTGTGTTCAGGAGCTGCTGAGCACCGTGGCCGAGAGGCTGGACTGTGCCGAGGACGACGTGGTGCTGATGGCCGTCGCGTATCCTGGAGAGAAGGTTCTGCTCGAGTCGGATCAGTGTGTGTTCTCGTCCTCGCTCAGTGCCGCCGAGCGACTGCACGTCTGCAGAAGAGACCTGACTGAGATCACGAGCCCCTCCACTGATAACGGGCAGCAGCGCTCAGTAAAGATGCTGAGCATGAACACGTGGGATGTAGCCGTGTCGCTCACCAACTGTGACTGGAGTCTCTTCAGTAACGTCCACGAGCAAGAGCTGGTGTACTTCACTCTGAGTCGTGACGGCAGCGCTGGCCACACGGTGGCGCTGGAGCAGCTGTTGCAGCGCTGCAATGAGACTCAGCAGTGGGTGATGAGCGAGGCGCTGCTCTGCCCGACCCTCTGCAAACGTGTGCAGCTCTTCAAGAAATTCATCAAGATCGCAGCACACTGTAAAGCACAGAGGAACCTGAACTCGTTCTTTGCTATTATTATGGGTCTGAACAGTCCGGCCGTCAGTCGACTCACTCAGACATGGGAGAAAGTCCCTGGGAAGTTCAGGAAGTTGTTCTCCGAGCTGGAGAGCCTGACGGACCCGTCTTTAAATCACAAAGCCTACAGAGATGCCTTCAGGAAGATGAAGTCTCCCAAGATCCCTTTCCTACCTCTGCTTCTAAAAGATATTACCTTCATCCATGAGggcaacaaaacatttcttgacAACCTAGTCAACTTTGACAAACTACACATGATAGCAGACACGGTGCGGATTATCAGGCATTGTCGGACAGATCACATGGGAAACATGTTGTCCCAGAAAGACAGCGTGGAAGTGAGAACGTACATCAATTACCTGCACGTCATCGACAATCAACAGACTCTGTTCGAACTCTCACACAGACTCGAGCCCAGGACATAAAGCAACTCGATACATCCTAAAACCACCGCTGAAGACAGGACAGCATCCTTCCTCTAACTGAAGACCGTGATGAGTAAGTCCTCCAGTAGGGGGAGACACAGAACAGATACAGAGTATCGCACAGCCAAAGAAATCTCAGCCAGTTCAACCCACCCCATGAAAGGAACAAAAGAAGCTGAATCATGCAAGAACGGGTTATAAAAGGAAAGTATTCTGTAAGTTACAGTACAGAAAGATCATGTCGATATGTCTTCATAACAGCACACTTTCGCTCAGTAGTGTAGGGCAGATTTTTAGTTGATTTGAGACAGTTTGCCACTGCAAAATAGGGACTTTCACcaataaataagaatatatgcatatatgggAAAATAATAGGCACATCTTTATTCCTGTGTAGTCCATTTAGTCTATAATGTGAGCTACATGCACAAATAACGAAACAATGTGATGCCTTTTTAGATCATGGCCAACAAACAATTTGTAGACAATCAGAAAAATATCCAAtattttgttctgtattttaGGAACTATCGGAAGCTAGTAGAAGTTTAGATTAAAGCGACATCTTAAAGTTATGCATATCTTTGAAGGGGGGAAACAATATCTGTGCAATCTATTTAGCAAACTGTAATAGAGATAATCGGTTTTAAATTATAGATGTATTTTATTGGAAAAGCCCTACTGAAAATAACTGAGCATTGGTTCTGTAATGGCTTAGATGAGATGGTGCTCGAAGAAAGCAAATTTATAGATTTCTCGTACAAGTTTTTGCTTTAACTTGTGAGACACCGAGATATTTATTGAACGACAAACTTGTCCCCGATTCAGAAGGGAAGACAAAACCGGTTTTAAATGCAAAGAGAAGatgtaatgtactgtaaatgtgaTCAGTTGGTCTGAAGGATTTGGCAACGCCATTGATTGACCAGTCTGATAATGCCTGTGAACTCTGTAAATACTAagactttgtttttaataagtaatGATAAACAGGCCACAAAGCAATAGCAAGGTGTACGTCTGaccttcagaaaaaaatgttagcaGTGACTGACTGTagctgctgtttgcactagatTTCTTCACAAAGAGCCTgacattaaaggaaaaaaattataattga

Function

GO: NA

KEGG:

id description
K08019 RAPGEF5; Rap guanine nucleotide exchange factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164895 lncRNA downstream 4893 12150542 ~ 12150877 (-) True G111716
TU164892 lncRNA downstream 16240 12139177 ~ 12139530 (-) True G111713
TU164891 lncRNA downstream 17998 12137461 ~ 12137772 (-) True G111712
TU164865 lncRNA downstream 74917 12080652 ~ 12080853 (-) True G111690
TU164864 lncRNA downstream 78763 12076453 ~ 12077007 (-) True G111689
TU164952 lncRNA upstream 160697 12363785 ~ 12365982 (-) False rxrbb
TU164932 lncRNA upstream 163701 12366789 ~ 12368614 (-) False rxrbb
TU164931 lncRNA upstream 163882 12366970 ~ 12368614 (-) False rxrbb
TU165001 lncRNA upstream 234337 12437425 ~ 12439653 (-) True G111788
TU165002 lncRNA upstream 236698 12439786 ~ 12440874 (-) True G111789
XM_043260276.1 mRNA downstream 114823 12035907 ~ 12040947 (-) False sp8b
XM_043260274.1 mRNA downstream 116696 12035907 ~ 12039074 (-) True sp8b
XM_043260275.1 mRNA downstream 116964 12035907 ~ 12038806 (-) False sp8b
XM_043261777.1 mRNA downstream 142826 12007457 ~ 12012944 (-) False macc1
XM_043261778.1 mRNA downstream 143065 12007457 ~ 12012705 (-) True macc1
XM_043260393.1 mRNA upstream 5017 12208105 ~ 12214349 (-) True si:ch211-254p10.2
XM_043260341.1 mRNA upstream 13768 12216856 ~ 12226949 (-) True slc6a19b
XM_043260344.1 mRNA upstream 162462 12365550 ~ 12378449 (-) False rxrbb
XM_043260345.1 mRNA upstream 162462 12365550 ~ 12378441 (-) False rxrbb
XM_043260346.1 mRNA upstream 162462 12365550 ~ 12378440 (-) False rxrbb
TU164609 other downstream 743993 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 869338 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1272559 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1289342 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1407470 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1450972 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2031466 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2706237 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3265392 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3265392 15468480 ~ 15496375 (-) False rps19

Expression Profile