RNA id: XM_043260860.1


Basic Information

Item Value
RNA id XM_043260860.1
length 4194
RNA type mRNA
GC content 0.43
exon number 18
gene id colq
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11839901 ~ 11854994 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCTGTCTTCTTTGTTCTGCACTCTGTCTGATTGCAGGCGTTCACAGACTGCATCTCCCATCAGGCTTTTAAACGGCCCTCTTCATAATTGCTCTGTCATTAATTCTGAGGGAAAGTAAAGGCGCCAATAAATTagagaggcGGGGAGAGAGAGCAGTAGTGCGGGACCGTCTCAGATCACTTCTCTGTGCTATTGGAGGTAGACCGTAGCCGGCAGCATGATTCTGTTCACACTTGGACTATATTTTCAACTCCTCTGCTATGTGGCGTCATTCTCTTACGTGGATAATATATTCCCTCGTCCAACAGATCTCCAGTTGCTGGAAACCAGGAAGAAATTCAACCCCTGCTGTTTACTGAGTCCACCTCCGCCCCCTCTCTTCCCTCCTCCCCCTTCACTGTGGCGGCAGGACCCTCTGACTGAGACGGTTGTTCCACCCAGTGTCCCATACAATCCGGCACCTCACACATGCTCCCCAGGGCCTCAGGGACCAGAAGGACCTCCCGGCCCTCAGGGTCCTGCTGGACTGCCGGGACCAAAGGGACCAAAGGGAGATAAGGGTGAAATTGGAAGACCCGGACAAAAGGGACGCACTGGCCCTCCTGGTCTCCCAGGACGACAAGGACCAAGTGGATGGCAAGGACCAAGTGGACctaagGGGGAGAAAGGCGATCCTGGGCTGATGGGCATGCCAGGGGCAAGAGGACTAATTGGGCCTAAGgGCTTACCTGGTCATAAGGGAGAAAAAGGCTCGCAAGGTTTCAGAGGTGAAATTGGCTTAAAAGGTGACAAGGGAACAATGGGCCTTCCTGGAATGCTTGGCCAGaagGGTGAAATGGGCCCAAAAGGTGAACCTGGAAGCTCAGGGAACAGGGGACCCACTGGCCGGCCAGGAAAAAGAGGAAAGCAGGGTGCAAAAGGTGACATTGGTACAACTGGACCCATGGGTCCTGCAGGCCCTCAGGGGGCCCCCGGTCACCCTGGACCTCCTGGTCTGCCCGCATCAGGACTGTACATGGTAGGACAGAAAGGAGAGAAGGGACAACCTGGCAGCCCGGGACGCTGCGGCTGTAATGCCCCCTCCTTTGACCACTGGGGCAGCTATCCCAGAGTGCCTGCAATCTTTGTGGTGAATAACGAACAGGAACTGAACCGTCTCCAGACCGATAATGCATTGGCCTTCCGTAAAGATCAGAGGTCTCTTTACTTCAAAGACATTGATGGCTGGATGCCAATTCAGTTAACACCGTTCCAGTCGATGGAGCGTGATCCCGACCAGGAAGGTTTCTGCGGAGACAGCATCGTGCAAGTTGAGAACGGAGAGGAGTGTGATGACGGAAATAAGGTGGTCACAGATGGCTGTGTCAAGTGCAAACTTGCATATTGTGGGGATGGATATCGCTATGAAGAGGCAGAGGAGTGTGATGGAAAGGATTTTGGCTTTCACACATGCAGGTCCTTTTTGCCTGGATCTTATGGACATCTCAAGTGCACAGCTGACTGTTTCATTGACTCAACAAACTGCAAGTATTTCACATGAGGACAAAAATAGTAGTGTCTCGTTTGAGCTGGCGAGATCCGTATAAACGACGACACTGAAAACCATAGATTCAGTGGATAAACTGAGAGTAGAAATCTTTGATGGAATTATCACAAACACATTAGCTGAACTCTGTTGACATGATGCTGAGAGACCATGTAGCTCACTCGGGAAAGGAACGCATGGCAAAGCCACGTTTGTGCTCGCGCTCTTAAGAACTCTAACAGGACTTCAGACACCATTCTCCATTCATTCAGCCTCTGCTTCCTGCCACTCGGCCCTGGCTCGACATTTGGCCAGCGTGGTTGGCTGAACTAAGAGGAAACAGGTGAGTTAGTTGCCTCTTGGGGATGGGTAAAGGACTTCTCAATACCTCAAAGTACTGTAGTACTGTTTCAGAGGAAAGCCATTTTCTCCTGGTCCACCCCACCTTCCCTCACATAGGGTGCTCTTTATGTGGAATGCAATGTGATGTTGTTACTATAGTATTTTGCATGAGGCTGAGATTGCTGTAGGCAGCATTACCAAGGCATgtaactgaaaaacaaaagtggCTCATATCTTTAAATGTAGGGTTAGACCAAACTGGTGCTTGGCCTTGTAAGAAAcctaataatttaaatattttaaataacactgatGTACATTAGGTTTAGTACAGTTTTGAATACTGGGTCCAAAATTAACTTGTTGCCACACAGCCCAATAATGGGTAAATTGAAgataaaattgaatttaagaactcataaaatggcaaaattatGAGCCAAATGACTGTTTAATTGAATAACATCGCTTGATGGTTGTTCTGAAGAGCCAACATACCATGTACAGTACCAACATTCAGTGTCTTCAATATCAatcataaacaaaacattactcAAAGCTCAATGAGGCAATCATTAATATCGCTGAACAATTAAATGCCTGAGTACGATTTGAACACCATACTCAAGAATAAATTCAAGGCAGTgtcaaaaagaaatgtttaccGATAGAAATGTTAGGTAAGTTGTCCCAACAAAAGATAGCAAAGTTGCGACTGGACTGGGAACGTATATTCTAATTGGAATTCATactattatgattatttttgttgcaaaGTGGACGTCACAGTTTGCAGTTTGTTGTCGCTTTCAAGAAACACGAAATGACATATGGAAGCATATTAAGTAGACTTcaaattttgttgaaataagGTACATTTTTGTCAccattttactcacccttatatAAAATGCTACCTCTTATAAACCATTTATACActcattttttgcattgttgcAGTGACCCAAATGGCCAGTAAAACCACTTACTTAAGCAccaaattcacattttacttCAGTTTGGCACATAACAGGTGTTACTTTTGGACCCTGGGGATAAAAGTTGTGCTTTCAAAGACTGTTTAATGTAAAGGTTGCATAAATGTACTTAAACACTAACCATAATAATACTACTGACTgacaatatttagaatttttaagaTTAGAAGACCCTGCTTTCCAGGCTCTCTGTTTGATTTATGGGGTCACACTTAGTTAACATTTCCAACATATCTCAGGAAACCACTTAAATATATCCATAACTCCTCCACCTCCATGCGTGGAGTAGGGTGCACATATTCCACAGTTTAGCTTGGTTTCACACATTTGTTTGGTACTTCAAGATCTTGAAGCAAAGCAAACACTGCTTATTTATCGGGTTATGGGTCTGAAGATCTTAAAATAGGGAGGAAAAGCCAATCTTACGAGGAAATCTTAactattttacaaggtggcgATTTGTAAGCATGAAGCTCtatccctaaacctaaccatcAGTGGGGCTTAGGCAGATTCAGAATTTATTCAATATTGTAATTATTCGCCAAAACGCAAAATAGTTTGGAATTGCCATGAGGTTGTGTTGGAAAAAAACCATTCATTATGTGAAGGCTCTAAAGCTGTTATTGAACATTTTGTACTGTCTGCTATTGCAGGGGTAGCATTTTGCTGCTATTCAGGCTAAAGACTGTTGGATTAAGGCTGGACTGTTTTTGTCGTCCCAAAGGCTTTAAACTGATTTATGCCAAAGTCCAGTCTGAATATACCTCAGCATATACGATGTGCTTTAGCCTTTGTGATTACAGGACCTGAGGTGTAGCATACAGCACTTACTTACTGTTAAATTCAGTGAAATCTTGCTTAAGTATCGTTGAGTTTTTTGATCAAGCCAGTTTTCCATAAGCTATATGATGCATTTGCTACAGAAACCTCTTTGCTTACATTTCTGGGGTGATATTCCTGACTTACCTGTAGatttcatgtaaaatattatgGATATATTATCGAAAATAAGTGTCTTGAATTTATTATTCTGGTGAAACtgcatgtttatattgtatactCTTGTTCAAAGGAGCAAAATTGCCATATACGTTGATGGCTTATGACAGGCAGGTGTTTTAGGAGTTAAAGTGTATTTAGCTTGTAACTGACTGTTATCCTCAGATTTGTACAAATGGAGGAAAGATGTTAACATCAAATATTGCACAACAAATACAAAAGAGACTGAATGTTTTGTCCTAGTGTCATTTAAAAGCTGTTCTCAGTATTAAAACCTGTTTGATACTGTCCTGCaatgatgttaaaataaagcttGAAAAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164789 lncRNA downstream 20123 11818459 ~ 11819778 (-) True G111639
XR_006252803.1 lncRNA downstream 55567 11783695 ~ 11784334 (-) True LOC122360397
TU164772 lncRNA downstream 58729 11780787 ~ 11781172 (-) True G111625
TU164770 lncRNA downstream 65720 11773919 ~ 11774181 (-) True G111623
TU164700 lncRNA downstream 173627 11662918 ~ 11666274 (-) False G111559
TU164803 lncRNA upstream 10686 11865680 ~ 11867315 (-) False LOC122361049
TU164819 lncRNA upstream 87370 11942364 ~ 11943955 (-) True G111661
TU164826 lncRNA upstream 128385 11983379 ~ 11983646 (-) True G111668
TU164845 lncRNA upstream 177599 12032593 ~ 12035126 (-) True G111680
TU164863 lncRNA upstream 220603 12075597 ~ 12076159 (-) True G111688
XM_043260955.1 mRNA downstream 16350 11820787 ~ 11823551 (-) True fkbp14
XM_043260991.1 mRNA downstream 59921 11774974 ~ 11779980 (-) True cpvl
XM_043261757.1 mRNA downstream 135073 11687295 ~ 11704828 (-) True jazf1b
XM_043261454.1 mRNA downstream 177669 11653213 ~ 11662232 (-) True hibadhb
XM_043261455.1 mRNA downstream 191032 11646850 ~ 11648869 (-) True hoxa13b
XM_043260858.1 mRNA upstream 27 11855021 ~ 11865183 (-) True hacl1
XM_043261989.1 mRNA upstream 10686 11865680 ~ 11867315 (-) True LOC122361049
XM_043260961.1 mRNA upstream 14204 11869198 ~ 11885649 (-) False ankrd28b
XM_043260960.1 mRNA upstream 14204 11869198 ~ 11885649 (-) True ankrd28b
XM_043260328.1 mRNA upstream 130640 11985634 ~ 11987450 (-) False twist1b
TU164609 other downstream 428124 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 553469 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 956690 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 973473 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1091601 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1799066 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2379560 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3054331 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3613486 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3613486 15468480 ~ 15496375 (-) False rps19

Expression Profile