RNA id: XR_006252800.1


Basic Information

Item Value
RNA id XR_006252800.1
length 4476
RNA type transcript
GC content 0.45
exon number 4
gene id atxn1b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16218661 ~ 16228466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagaggaagagagagagagagagagagagagagctggcaGTCTGTTTGCCTTGCATAACATACGCTGTAGCTCTCACACGTAGGGCTAGTGAAACAGCGCAGACGAGGGGACTTCCTTTACCCTCAGTCCTCCGAGCAATTGTCGAAGGAAGTGGAGGAGAGTGAAGGTGGGGGGGGGGATTGGACATGGAAGAAAACATAAATCAGAGGATTGCGTGTGTGACCTGATAGCAGTGCTAAACCTGGACAAAGGACAGCTTGCCAGTGGGTAGAGTGAGTTACGCTCGtagtgcagagagagagagagagagttgttaAAGGCTCCCCTATAAAGAAAGGTACGGACCAGTAGACATCAGTGAGAGATGATTCCACATGAAGCATTTGGATCCTTTCATTATAAGAGTCCTGACAATGGGCGATACTATAGTAAAAGTGGAGCAAAGTAATAGAACAATGAAAATCTTGACAACTGAGTTCTACTTTGAACTTTAAAACATCCTGATCAAGACAAGTGGGTTAAAATACAGGACAAGCTCCAAGACCATGAAGTCTAACCAGGAGCGTTGTAATGAATGCCTTCCGCCAAAAAAGCGGGAGATTTTAGCTCTGGAAGAGAAGCAGGTGTTGGTGTCAGCTGCTGTTGGTGAGAGCCAGAGTGGAGAGAATTTGGCTTGGCTAGCCAGTGTTGCTACCATGGCTAGCATGGCCCACATCCCCAACAATGCAGGCCCATCACAGAGCAACAGTGCTGAGCCTGACAGCCCCCCGCCATCAAATAAGGCTCTCACTGTGGTGACAGAATATCCTCCAACTACTACATCTGCTGGCTTTTCATTCTCTTCCAATAGCTCCACATACAAGGGAGTTTTCTCTGGGCCTACCGTGCTAACAGCCAATCCTGCGGTTCTCTCTACAAGCCTTCCTCAAACCATAGGCTCCGTCCAATACACGCAACTTCCCCCCAATCTCCAGCTCATAGGGCCCTATACAAGTTATATCTCTTCACAGATTGTGCCATCCACAACCAGTCCAACACAGCCACGGAGGGCGCCACAAGAGGTTTTGGCCACAACAGCTGTCATCTCCCAAGCATCCAGCCTTGATTCACCGAATCATCATGTGATTTCTTCTATACCAAATGTTTCCCATAGTCAATGCATCCAGGTAGAGAGTGCTCCTTTGGGTTTGACAGTGTCCTCCCCTTCTGCCCAACTACCCATTCAAATCCATCCACATTCAGCAGTCCTTGCCCCTCATGCCCTGGCCCTCACCCCCTCTCAAGTGGTTCTACACTACACAGATGGCTTCATCGCAAAGCAACCAGACTCCCATCCAAGAGAAATGCAGAATGGTACACTTGGAGAGATTTCAATGGTCAAGCACAGTACTGCCAAAGGGATTCCTAGCCAGTCAGAAGGTGACCAAAGCCACAAGCAAAACCACAACTTGGGCCTCCAGACCCAAGCTCAGGTTCTGCTTCCAGCAGACTACAGCACTCATGAGAGAACAGGACTGCAGACATCCCTGATGTTGGTATCCAGTAGCCACCTTGCAGCAAACAGCAACTCAGAGCTCCAAAGTATCTTGAATAAGGACCACTCTTCATTGCACCTTGCTGAGAGAGGAGGGATCTGCATAGGCAAACCAATGTCCAGAGTGTCTGCCCTCACTTCCTCAGACAGCCAAGTTTCTCCGGCCTCCACAATCTCCCCCCACACACTCCTGCAGGCTCCTCACAACAGTCCCCAACAGGAGCTCTCCACCAGCCTTTACTCTGCAACGCAGCTCCCAATCATTGGCTACATCACCAGTGCTTCTGGTGGACCCCAGCAAGCAGTAACTGGTTATCAGAGCAACCTGCCACAGCACGTGGTGATCTCAGGCAACCCCTCCTTGCTCATTCCGGTGAGTGCCACTAACATCAATCCAACTACTGCTGAGCCGGAGGTTACCCGCTGTTCTGTCATCCCCAGTGCTGCAAATGCATCAACAGCTCTGCCTCAGACGTTTATTAATACATCCCCACCTGCAGCTCCAGCTTCAGTTGTACCCAATGGTAAAGACATCACAGTCTCCGATGGGGGTCATGCCTCCTGTGTTGTGCCAAGTCCAACCCAAATACAGCTGCCTGTTCTTTCAGCCAATGTAGTGGGGTCTCCAGTTCCTGTAACACCTCCAACATCCACAAGCCCTCACAGCtcaccatcatcaccatcagCAGGCCTACCACCATTCTTTATGAAGGGCTCTATTATCCAGTTGGCAGATGGCGAACTAAAGCGTGTGGAGGATCTGCGGACAGAGGACTTTGTTCAAAGTGCAGAGGTTAGTGGAGAACTAAAGATTGACTCCAGCACTGTAGAGCGCATAGAATGCAGCCGCACACCCAATGCTGTCATCATACAGTTCTCAGTGGGAGAGAACAAAGCCCAGGTCTGTGTTGAGGTTCTGGTGGAATACcctttctttgtgtttggtcAAGGTTGGTCGTCCTGCTGCCCTGACCGCACCACCCAGTTGCTAGCACTATCCTGTGCCAAACTCTCTGTGGGTGATGTTTGTATCTCTCTAACCCTTAAAAGCCTAAAAGATAGCATTCAAAAGAAAGATAATTTTTCAGACTCTATGACGAAACACAAACCAGCCAAAAACAATGGGCCAATTGAGGAAAGACAAACCCAAATGGAGGATCTTAAGAAAGGACACAAAATGACATCAGGAGTGGAAAATACTGCAGGAACACTGGTTGAGACTTCTAATTCGAGAAATGTTTTAACCCTCTTGGAGAATGGGGGAATCATTTCTCAGACACAGGTGAACCTCCAGACCCAGTcagaaaaaacatgcacatttaGTGTCGAGAAAGCCGTTAGCCGCAAGAGGAGATGGTCTGCTCCAGAAAGGGGAGAAATGTGGAGGTCTCAAGAGGACCCTCAGATTTTACCCAAATTTCCCTTCCTCCCACATCAGCTGAAGGTCAGCATCGAGGGCCGCTCTAGCACAGGTTGCTGAGGATGTTCAGAACTCCATAGAGCAGTGGTGGGGAGTCAATTTCTAAACAAGAAATACATTAATTAGCCTtacttaattcattttaatttcacataatggtgaataactgaataaaaattatttttgcttggTGTCCAAGAAAATGCTTTTGctttaacaacaaaaactcAGAATACTTTCCCCATCACTGCCATGGACTCCAAGAGGGACAAGGAAGAGCAGATTTACTTTTCGCTATGTACATGTAAACctcagtgtgtttgtgcactGTGTGGATAACTTCATTGAAGACAGTCAGGTTTCAACACTGGTGGCAACGAACACTCTTATCCAGTGTGTGTGCTATTCTGTTTCAACCTAACAACAGCGATTTATTATCATCTGcatcaaaaaaaatactttttgtttgtttgtttattttttaaaagaaggctGTCAACCACTTGAAGGCATAAAAGCATTATAGCGATTTATAGTCAAATTGCATTCTCAGGTTGAGAAACTGGCCCGACTGTTTATGTTCCTGTGTTACTTCGctcagttacaaaaaaaaaaaaaaaaaaaaacgagctgGTGATCATTTTAGCTCCAGTGCAATGACTCATGGGAAGTCACTGGCTGACTATTGCTCCCTCTACAGCCCATCACTGTACATGCACCCAATGTACAAAGAAGGCTAACTTTTAACTAGCATGACATGTTGTGAATGTAGCTCACGTGCTTGCtattgaaaatgcattcatatgGGAAAAAACTACTTTCTGTTGTATGTACAGATTTGGGCGTCAACAATATggctttttatattatatagatatacatcCAAAGACAGTCAGAATTTGCTGTATGCATATGCCTCAATGGTCCATAGCCAGGATTAGTTCTAGCAATACCACAAGGCCTCATTTAGGGTTGGAAGACCAAACTTGATGTCTAGTTAATTGACCCATAGCATACACATCATTGATctcattgttttgtttagtttttttctttcaaggaAGATCTAGATCTTTTACCTCCCGCTAAAACCTCAATCGCCAGAGTGACATTTCTtcaacaaagaagaaaaaaagcacataactgatttctcattttcttatatattcGATGTAAACGACTATACTTGTGTGATTCGTTGTACCTGTGatatttttctcattctttGACAAGCTCCTTTTCTACAAACTGACAAAAAGCAATTAAGACAGAAGTCAACCTCAACTTTTCTAACTGTGGCGTGTTTATGTGAACAGAGCATCCAAGACTGTTCAGTGAAGTCAGTGATCATTTCTTTGGTGGTGCTTGCAAGTTTTTGTAGCTGTTTTGATTTTTGTGAAATGGAAAGGAACATCGGACTCGACTTTTGGCTAATATGTCTAGTTCAATGACTTCCTGTATAGTACAAATCTATTGTATCTGTATAATCACTCTAATAAAATACTGTGCCAATTTTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167287 lncRNA downstream 21984 16120326 ~ 16196677 (-) True G113281
TU167286 lncRNA downstream 22765 16194029 ~ 16195896 (-) True G113280
TU167319 lncRNA downstream 25972 16190862 ~ 16192689 (-) True G113300
TU167254 lncRNA downstream 77426 16139412 ~ 16141235 (-) False G113267
XR_006252851.1 lncRNA downstream 151116 16066166 ~ 16067545 (-) True LOC122361072
TU167356 lncRNA upstream 123804 16352270 ~ 16356916 (-) False G113325
TU167358 lncRNA upstream 123804 16352270 ~ 16357623 (-) False G113325
TU167360 lncRNA upstream 123804 16352270 ~ 16357623 (-) True G113325
TU167361 lncRNA upstream 123804 16352270 ~ 16357623 (-) False G113325
XR_006252836.1 lncRNA upstream 259652 16488118 ~ 16494739 (-) True LOC122360769
XM_043260160.1 mRNA downstream 8028 16197719 ~ 16210633 (-) False dtnbp1a
XM_043260161.1 mRNA downstream 8028 16197719 ~ 16210633 (-) False dtnbp1a
XM_043260159.1 mRNA downstream 8029 16197719 ~ 16210632 (-) True dtnbp1a
XM_043262055.1 mRNA downstream 64273 16152504 ~ 16154388 (-) True LOC122361096
XM_043262054.1 mRNA downstream 66582 16148963 ~ 16152079 (-) True LOC122361095
XM_043260722.1 mRNA upstream 4506 16232972 ~ 16239506 (-) True fam8a1b
XM_043260723.1 mRNA upstream 11488 16239954 ~ 16243472 (-) True zgc:110410
XM_043260724.1 mRNA upstream 28016 16256482 ~ 16264542 (-) True derl1
XM_043260721.1 mRNA upstream 38572 16267038 ~ 16272470 (-) True tomm40
XM_043261015.1 mRNA upstream 44814 16273280 ~ 16280228 (-) True ddx61
TU167253 other downstream 77426 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 204910 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 356768 15857599 ~ 15861893 (-) True G113220
TU167155 other downstream 399575 15816979 ~ 15819086 (-) True G113203
TU167049 other downstream 722286 15492821 ~ 15496375 (-) True rps19
XR_006252795.1 other upstream 4506 16232972 ~ 16239506 (-) False fam8a1b
TU167506 other upstream 451731 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 761836 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 2128951 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 2264160 18492626 ~ 18520287 (-) False mroh1

Expression Profile