RNA id: XM_043260881.1


Basic Information

Item Value
RNA id XM_043260881.1
length 1035
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC122360352
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4159487 ~ 4160521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCACTGTTCACACACTTGTTGGCCTGTCTCTTTGGCATCGGATCATGGGTGGCCATTAACGGGATGTGGGTGGAGCTGCCTCTGATCGTCCCCTCTATTCCGGAGGGGTGGTACCTGCCCTCCTACCTCACTATCATTATCCAGATGGCTAACATCGGGCCTCTCTTCATCACGCTCATGCACCGTTTCAGACCGGGCATGCTGGACGAGCGGCCTGTTATCTACACCATCGTGACGGTCGGTCTGGTGGCCACCTTCCTCCTGGCCTTCTTCTGGAACCACACGCTTTCTTTTGGAGGAGGCAAACATAGCGCTGCCCTACTGTCCCTCAGCTTCCTGCTGTCTGTGGTAGACTGCACCTCGTCTGTTACCTTTCTACCCTTCATGATGCGTCTACAGCCTCGGTACCTCACCACCTACTTCATTGGAGAGGGTCTAAGTGGCCTGGTCCCAGCACTGGTGGCTCTTATCCAAGGCGTAGGGGTGATCCACTGCAAAAATGCCAGTGCTAATGCAAACTTTAGCATGGGGAACTCATCCTGGGGCTTCGATGGAGCACTTCAGGAACAATATCAACCAGCCAACTTCTCTGCTCAGGGTTTCTTCCTGTTCCTCAGTGCGATGATGTTCGTGTGCCTGGGAGCTTTCTTGTTACTCAACTTCCACCCAGCTGTGGTGCGGGAACACAAGAGCAAATGTTATACTGATGATTCTCAGCAAGTGGAGAAGATTGATATGAGCCAGTCCCCAAATAATGAAGCTCCAGAACAAAAGCCCATGCTGGATTTCACAGAAGGACCTGTTTTAAAGCGACACAGTTCGTTTGGAAAAGGAACCTACAGCAGAATGCAGCTGGTCTTCATATTTGTAGTTCTGGCCTGGGTAAACGCACTGACCAATGCAGTCTTGCCCTCAGTCCAGCCTTACTCCTGTTTGCCATATGGAAATCAGGCCTATCATCTTGCAGCCACTTTGTCTTCGGTAGCCAATCCGGTGGCTTGCTTCATTGCCATGTTTGTGCCAATCAGGTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162114 lncRNA downstream 3775 4153717 ~ 4155712 (-) True G109729
TU162087 lncRNA downstream 217848 3940957 ~ 3941639 (-) True G109716
TU162009 lncRNA downstream 267664 3891138 ~ 3891823 (-) True G109650
TU161994 lncRNA downstream 442404 3709267 ~ 3717083 (-) True G109638
TU161958 lncRNA downstream 530070 3628808 ~ 3629417 (-) True G109615
XR_006252809.1 lncRNA upstream 19886 4180407 ~ 4181293 (-) True LOC122360497
TU162129 lncRNA upstream 226880 4387401 ~ 4387701 (-) True G109743
TU162148 lncRNA upstream 652798 4813319 ~ 4814496 (-) True G109760
TU162253 lncRNA upstream 658286 4818807 ~ 4819736 (-) True G109819
TU162254 lncRNA upstream 661034 4821555 ~ 4822686 (-) True G109820
XM_043260701.1 mRNA downstream 415875 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA downstream 415875 3729142 ~ 3743612 (-) False csf3r
XM_043260702.1 mRNA downstream 415875 3729142 ~ 3743612 (-) False csf3r
XM_043260700.1 mRNA downstream 415875 3729142 ~ 3743612 (-) True csf3r
XM_043261376.1 mRNA downstream 460417 3684118 ~ 3699070 (-) False hace1
XM_043260882.1 mRNA upstream 43160 4203681 ~ 4243342 (-) True LOC122360353
XM_043261771.1 mRNA upstream 351453 4511974 ~ 4614017 (-) True LOC122360932
XM_043261763.1 mRNA upstream 635289 4795810 ~ 4799825 (-) True LOC122360926
XM_043261296.1 mRNA upstream 728962 4889483 ~ 4894107 (-) False smpdl3b
XM_043261295.1 mRNA upstream 728962 4889483 ~ 4894107 (-) True smpdl3b
TU162095 other downstream 63983 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 1029508 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 3276735 882459 ~ 882752 (-) True G109287
TU161498 other downstream 3526590 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3864502 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 1071690 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1075125 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1198989 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 1656543 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 1783700 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile