RNA id: XM_043260892.1


Basic Information

Item Value
RNA id XM_043260892.1
length 5095
RNA type mRNA
GC content 0.53
exon number 31
gene id ascc3
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2915655 ~ 3064578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAattcccacaatgcacttcACCGTAAGCTTGCTGCATGTACGCCGGTTGACGCGGTTCTGACGGGTCCAGCAGAGAGAGTCCACTTTACCTCAATCTCTTCACCCGCTGTCAACTCAAACTTGCTAGTGGACGCAGACGACCTTGAGCGTGGTTGACCATGTCTCCTCCTCGGCTCACCGGAGCCCTGCGCTCCTTTTCTACTGTCAGCAAACAGGATGATTTAACACAAGACATTTATGATCTCAAGAGCAAACGCCTGAAACGACAGGAAATATTTGGCAGAGGTGGTTTGACATGGCAGAAGATAGTTCAGTTCTTCACCcaacatctggagaagaaagATCAACCGGCAGCCACTCTTGAGTTGAAGAATATCCTCCAAGCAGCCAAACAGATCGTTGGAACGGATTATGGGCAGGACACCATTGAAAGTGCCGGAGTCTTCTTGTTTAAAACATTCCACAACAAAGACCAGATCGGTCACGAGGAAACCAGGGCCATAAAACAGATGTTTGGACCCTTTCCGGCGTCTGCAGCCGAGTTGTCTTGTGCAGCTGTTGGTCGTTTAGTGGCCCAGATTGGAGAATCTCAGGTGGATGCTTTCATCCAAACACAGAGTTCTCTCAAGACGGTGAACCATACTTCTATCTTTGGACGGAACATTGCTTTCTCATTTGACACATATGTGCTGGATGCTCAAGATACTCTGCCCTGGTCAGAGGGGACTGATATGGAGCAGGACGTGGACTTTCACAGCTTTCTCAATAATCATGTTGGTGAGCGGAGAGCAGGAGGTGACAGAGATGATGCTTGCTCCGCAGAAGAGCTAGAGCGGAGAAACCCAGACAGCTCCATCCTGAGACAAGAGGTGGAGAAATACCTGAAAGAGGGAAATATGGTATCATCCAGTGCCGAAGAGCTCTCCACCTCTCTTTTTGAGATGCTTGCTTCCACAAAAAGCGATGACGAACTACAAAACGAGCTGTTTGAGTTTCTAGGTCCTCAGGGATTTGAGATGATCTCCAAACTCCTCCAGAGTAGGTCAGACATTGTGGATTCCCTGGTGTCCATCCCGTTGGATAGCAGACCTCACTTCACTTCAGgAAAGCTCAAAGGGATGAGGGATGAATCCACCAAGCCCACATACGGCTGCCAGGTGACCATCCAGTCCGAACAGGAGAAGCAGATGATGAAGATTTACaggaaagaagagaagaaggagAGGAAGCGTGAGAAACGAGGAGATGAAGGGGATACCTATGAAAGCGCTTTTCATTTCGACCCCAAGGAGCTGAGACTGCAGAGGGAACAGGCCTTGCTGACTGCACGCAGTTCTCCGGTGTTTGGCCGGCACAGAGATTACGAACGCATCCGGTACCCTCACGTCTACGATTCTTACGCCGAAGCCATCAAGACCTCAGCATTCGTCGGTGGATCCAAGATGCTGCTGCCCGAGGGGATCAGAAGAGAGAATAATAAGATGTATGAGGAGGTTGAGATCCCCCCCAACGAGCCCATGCCCATTGGCTTCGAGGAGAAACCTGTGTACATCTCGGAGCTGGACGAGATCGGCCAGTTGGTGTTTAAGGGCATGAAGAGGTTGAACAGAATTCAGTCTATCGTGTTCGAGACGGCTTACAACACCAATGAAAACCTGCTCATCTGCGCCCCCACCGGTGCCGGCAAAACCAACATCGCCATGCTCACCATCCTGCACGAGATTCGCCAACACCTGCAGCCTGGGGGAGTCATCCGCAAGGATCAGTTTAAGATTGTATACGTGGCTCCGATGAAGGCCCTGGCTGCTGAGATGACTAATTACTTCAGTAAGCGATTGGAGCCTTTGGGCATCGCTGTCAAGGAGCTGACGGGAGACATGCAGCTGACCAAAGGAGAAATCCTCCGCACTCAGATGTTGGTGACGACTCCAGAGAAGTGGGATGTGGTGACCAGGAAGAGTGTGGGGGACGTGGCTTTGTCTCAGATCGTCCGACTGCTCATCCTGGATGAAGTTCATCTTCTTCATGAGGATAGAGGACCTGTTCTGGAGAGCCTTGTGGCCCGGACGTTACGTCAGGTGGAGTCCACCCAGAGCATGATTCGCATACTTGGTCTCTCAGCGACTCTGCCAAATTACTTGGATGTGGCGTCTTTCCTGCACGTGAACCCTTTCATTGGATTGTTCTACTTTGACGGCCGTTTTCGTCCTGTTCCACTTGGCCAGAGCTTCGTTGGCATCAAGACTACAAATAAGGTCCAGCAGCTGCACGACATGGAGGAGGTTTGTTATGAGAAAGTCCTGAAGCAGATCAGAGCGGGTCACCAGgTGATGGTGTTCGTACATGCCCGCAACTCCACCGTCCGCACCGCCATGAGTCTGATCGAGATGGCCAAGAACCGAGGAGAGCTGTCCTTCTTCCAAGTCGACCAGGGTCCGGACTACGGCCAGTGTGAGAAACAGGTGCAGCGCTCCAGAAACAAGCAGGTGAGGGAGATGTTTCCGGACGGGTTCGGTATCCATCACGCCGGAATGCTACGACAGGACCGCACGCTCATGGAGAACATGTTTTCCAGAGGGTACTTAAAGGTTCTAGTGTGCACCGCCACGCTGGCCTGGGGTGTTAACCTACCCGCTCACGCGGTCATCATCAAGGGCACTAACATCTACGATGCCAAGCGTGGTGCGCTTGTGGACCTGGGCATCCTAGACGTGATGCAGATCTTCGGTCGAGCTGGACGGCCGCAGTTCGATAAGTACGGTGAAGGAACCATCATCACGACCCACGACAAGCTGAGCCATTACCTGACTCTCCTGACTCAGCAGAACCCCATCGAGAGCCAGTTCCAGCAGAGTCTCGCCGACAACCTCAACGCTGAGaTCGCTCTAGGGACGGTCACTAATGTTGATGAAGCCGTCCGGTGGCTGAGTTACACGTACCTGTACGTGCGAATGAGAGCCAATCCACTCGCTCACGGGATCAGTCACAAGGCCTATCAGATGGACCTGCTGTTGGAGCTCTACAGGAAGGAGTTAGTCGTGGAGTCCGGAAGGAAGCTGGATAAGGCGCGGATGATCCGTTTTGACGAGAGGACTGGTTATTTTGCATCCACGGACCTCGGCAGGACGGCCAGCCACTTCTACATAAAGTACAACACCATTGAGACATTCAATGAGCTGTTCAATGCACAGAAGACCGAGGCAGATATTCTGAGCATTGTTTCAAAAGCTGAAGAGTTTGAGCAGATCAAGGTTCGTGACgaggagctggaggagctggagaagATGTTGTGTAATTTCTGCGAGCTGCCGGCGACCGGAGGAGTGGAGAACGGCTACGGCAAGATAAACATCCTCCTCCAGACGTACATCGGCCGCGGGGAGGTGGACAGCTTCTCCCTCATATCTGACCTCTCCTATGTAGCGCAGAATGCTGCTCGTATCGTGCGGGCTCTGTTTGAGATCGCTCTGAGGAAGCGCTGGCCGGCCATGACCTACCGTCTGCTAAACCTGTGTAAAGTGATAGACAAGCGTCTGTGGGGCTGGGCCCACCCGCTGCGACAGTTCAGCGCGCTGCCCCCTTCGGTGCTGTCCAGAATGGAGGAGAGGAACCTCACGGTGGACAAACTCAGGGACATGGGCAAAGATGAGATCGGTCACATGTTGCATCACGTGAACATCGGGCTGAAGGTGAAGCAGTGTGTTCATCAGATCCCCGCCATCCTGATGGAGTCCAGCGTTCAACCAATCACACGCACTGTCCTGCGCGTTCGCCTCAGCATCACCCCAGACTTCAGGTGGAATGACcagGTCCATGGCTCAGTGGGAGAGCCCTGGTGGTTATGGGTGGAGGATCCCATCAACGACCACATCTACCACTCTGAGTACTTCCTCCTGCATAAGAAACAGGTTGTGAGTGGTGAGCCCCAGCAGGTCGTCTTCACTATACCCATCTTTGAGCCCATGCCTTCTCAGTATTACATCCGAGCCGTGTCTGACCGCTGGCTGGGTTCTGAAGCTGTGTGTATCATCAACTTCCAGCATCTCATCCTGCCTGAAAGACACCCGCCACACACTGAGCTCTTGGATCTTCAACCGCTGCCTGTGACTGCGTTGGGAAACCGGGAGTATGAGAGTCTATACAAGTTCACGCACTTTAATCCCATTCAGACGCAGATCTTCCACACACTCTACCATACAGACACCAACGTCCTGCTGGGGGCCCCCACCGGTTCCGGCAAAACCATCGCTGCAGAGATGGCCATCTTCAGGGTCTTCAACAAGTACCCCACCTCCAAGGTGGTCTACATTGCTCCTCTCAAAGCACTGGTCCGAGAGAGGATTGAAGACTGGAAGATCAGAATAGAAGAGAAACTTGGGAGGAAGGTGGTCGAGTTAACAGGCGACGTTACTCCAGACATGCGAGCCATCGCTCAGGCCGACCTGATCGTCACCACTCCAGAGAAATGGGACGGAGTCAGCCGCAGCTGGCAGAACCGCAGCTATGTGCAGAAAGTAGCTATTCTCATCATAGACGAGATCCATCTTCTAGGTGAGGACAGAGGGCCGGTTTTAGAGGTCATTGTGTCCAGAACCAACTTTATCTCATCTCACACCTCAAAACAAGTGCGAATCGTGGGACTGTCTACCGCTCTGGCTAATGCACGGGATCTAGCCGACTGGTTAGGCATCGGACAGGTGGGACTGTTTAATTTCCGGCCCTCCGTTCGCCCAGTGCCGTTGGAGGTTCACATCCAGGGCTTTCCGGGGCAGCATTATTGCCCTCGTATGGCCAGCATGAACAAACCTGTCTTCCAAGCAATCCGCACACATTCTCCTGCCAAGCCGGTCCTCATATTTGTGTCATCGCGCCGGCAAACGCGGCTCACGGCTCTGGACCTCATTGCGTTTCTGGCTACAGAAGACGACCCCAAGCAGTGGCTCCACCAGGACGAGAGAGAGCGCGCGTCGCCTGCCGGGgtttctgatgtgtgtgtgggtttatttAGATGAACGATATCATCGGCACTATAAGAGAGTCCAATCTGAAGCTGACCCTGGCGTTCGGGATCGGGATGCATCACGCGGGGCTTCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161849 lncRNA downstream 96710 2842052 ~ 2842281 (-) True G109544
TU161843 lncRNA downstream 110368 2825428 ~ 2828623 (-) True G109538
TU161836 lncRNA downstream 130237 2808376 ~ 2808754 (-) True G109531
TU161823 lncRNA downstream 258653 2677203 ~ 2680338 (-) True G109522
TU161940 lncRNA upstream 49264 3113842 ~ 3128916 (-) False G109600
TU161947 lncRNA upstream 279352 3343930 ~ 3418605 (-) True G109607
TU161957 lncRNA upstream 560064 3624642 ~ 3625012 (-) True G109614
TU161958 lncRNA upstream 564230 3628808 ~ 3629417 (-) True G109615
TU161994 lncRNA upstream 644689 3709267 ~ 3717083 (-) True G109638
XM_043260895.1 mRNA downstream 23560 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA downstream 23560 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA downstream 30214 2899313 ~ 2908777 (-) False sim1a
XM_043260444.1 mRNA downstream 238042 2700321 ~ 2700949 (-) True LOC122360106
XM_043261422.1 mRNA downstream 928325 2000781 ~ 2010666 (-) True LOC122360634
XM_043261376.1 mRNA upstream 619540 3684118 ~ 3699070 (-) False hace1
XM_043261375.1 mRNA upstream 619540 3684118 ~ 3699070 (-) True hace1
XM_043261378.1 mRNA upstream 619540 3684118 ~ 3695823 (-) False hace1
XM_043260701.1 mRNA upstream 664564 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA upstream 664564 3729142 ~ 3743612 (-) False csf3r
TU161510 other downstream 2056239 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2306094 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 2644006 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 2660517 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 2660912 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 63483 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 1030179 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 2167633 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 2171068 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 2294932 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile