RNA id: XM_043260896.1


Basic Information

Item Value
RNA id XM_043260896.1
length 3882
RNA type mRNA
GC content 0.45
exon number 9
gene id sim1a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2899313 ~ 2915431 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTCATTTTTGTGGTAGCTCCTGACGGAAAAATCATGTACATTTCTGAAACGGCATCAGTGCATTTAGGGTTGTCACAGAGCTGACGGGGAACAGCATTTATGAATACATCCACCCCGCAGACCACGACGAGATGACCGCGGTCCTGACGGCCCACCAGCCGTATCACTCACACTTCGTCCACGAATATGAAATGGAAAGATCTTTTTTCCTGAGAATGAAATGCGTCCTTGCTAAAAGAAACGCTGGCTTGACGTGTGGCGGTTACAAGGTAATTCACTGCAGCGGCTATCTGAAGATCCGTCAGTACAGCTTAGACATGTCTCCGTTTGACGGCTGTTATCAGAACGTGGGTCTGGTGGCTGTCGGTCACTCTCTCCCCCCCAGCGCAGTGACCGAGATCAAGCTCCACAGCAATATGTTCATGTTCAGAGCCAGCCTGGACATGAAACTCATTTTCCTGGACTCCAGGGTTGCGGAGCTCACTGGCTACGAGCCGCAAGACTTAATAGAGAAGACACTTTATCATCACGTCCACAGCTGTGACACTTTCCATCTCCGCTGCGCGCACCACTTGTGTGAGTTAgtGCTGGTAAAAGGACAAGTCACCACCAAATACTACCGATTCCTGGCTAAGCAGGGTGGATGGGTCTGGGTACAGAGTTATGCTACTATCGTACACAACAGCAGATCATCTAGACCGCACTGCATCGTCAGCGTCAACTACGTCCTCACGGACACGGAATACAAAGGACTACAGTTGTCCCTAGATCAAGTGACGTCCACTAAGCCCTCGTTCACCTACAACAGCCCTTCTAACCCCATCAACGAGAACAGAAGAGTTGGCAAAAGCAGAGTCACCCGTACCAAGACCAAAACAAGACTATCTCCCTATTCACAGTACCCGGGTTTTCCTACGGATCGCTCAGAGTCGGATCAGGATAGCCCATGGGGAGGGAGCCCACTGACTGACTCTGCGTCTCCTCAGCTTCTGGAGCAGTGTGAAGGCATAGAGTCCTCATGCGTGTACCGGCAGTTCTCGGAACCACGGCCGCTCTGCTATGGCCTACAGCTGACAGATGATCACCATACCTCCAGCGACCTCTACGGCCACACTCACACCGAGTCCTGCGAGAGAGGTCGCTGTAAGGCTGGCCGATACTTCCTGGGCACCCCTCAGCCCGGGCGAGAGGCGTGGTGGGGTGCAGCCCGCTCTGTCCTTCCGCTACCCAAGTCCTCTTCCGAGAATGGAGACAGTTTTGAAAGTGTAATGCCCCACATCACCTCCATCCATAGCCTGCAAGcAAGGGGTCACTGGGATGAGGACAGCATGGTCAGCTCACCTGACACGAGTGATTCAGGTGACCGATACCGTGGCGACCAATGCCGCGCAAGTCCTCAAGAACCCAGCAAGATTGAGACGTTGATTCGAGCCACACAACAGATGATCAAAGAGGAGGAAAGTCGTCTGCAGTTGAGAAAGGCTCCGACAGAAATACCTTTGGAGTCTACAAATGGTCTGGCCAAGAGCCACGGCTCGTCGTTTCACAGTACCGACTTTCCTCAGCCAGCATTGCAGAGCGTGGTGTGTAGGGGGCCGGCTCAGGTTATAAGCCCCGCCCCTAGCCCTGTTCCTCTCTCCCGTCTCAGCAGCCCCATCCCTGACAGACTGGGTAAAAGTAAAGACTTCCTGCAAAGCGAGCTCTCCTCTTCTCAGCAGCACCAGCAGCCGCTGCCCCTGACGGGCACATGTGCTGTCTCTCCGACTCCAGCGCTATACCCCTCACACCCCCGCCAATACCTGGAAAAACACACAGCCTACTCACTCACCAGCTACGCACTAGAACATCTGTACGAGGCAGACAGCTTTAGAGGATACTCCCTGGGTTGCTCGGGTTCCTCCCATTACGACATGGCCACTCATCTACGCATGCAGGCTGAACAAGCACCGGGCCATAAAGGCACCTCCGTCATTATCACCAACGGCAGCTGATGCTTATCAAATCACGAACCGACACTCAGTGCTTCACCCTCTCACTCCAGCTAGCCTAGGATTTCTGATTAGAATTTTTTCGTTCCTACGAATTCTGCAAACACTTTTTAATTCTGAATTGttttctagtaaaaaaaaaaaagtaaacgtccttaaagcttttttttttaaaggtttatgcttaagcagaaaaaaagctaaacgaaattaaataaatcttatatTATGCAATTGTGTATAAGTGAATTGATCTaattttaaggatgtttagatatttttactggaaaacaagatgaaaatactaattaattacACTTTTGCAGTGTGTTAAGGGATGTGAGTTGATGTCTATGAGAGGGACATTTGTTCATCTGTTCACAGAGAAGGGATTCCATGTGAGAGTTTGTTTGTCAAATACTTTCTATACCCGGATGCTACTTTTTTTAACCACTATTATAAGCTGCTTGAATAAATTGGAATTGTTCGAATTTCTCAAAATAAGAGATTTCATGAGAACCGTGATCTCGTGACAGCACATTGACACGATGGTTCAACAATCTACAccgtaaatgtatttaaataattttattttctgtagttCACATTTGGATTTGGGTCACAATACTTTGTGGTTAACttacatgtaaattaaatacgtgggatgttttttttttcttgtttttctatATCCATGACCTCATATTCCATCCAGGTTTTAGTCACTTGCCCTGTGTACATGAGACACAGCCTGTTTTTAACCAGTCCATCTGCGGCACTGGGGAAAATACAtcttaatattaaaagaaacgTTGAGTAGCATGCTGATGTACCAGAGATGAACAACTACGTCTAATCCAAAACGCAGctttaatttataattgtttaagGTTATTGTAGGATTGAATTTTAGCTCATTTGTGTACTGGGATACTTTTTGCAGTTGCATATGCCGTCCATCTGTGTTTGGACCCGATTCAGTCAAAGGCTTGAAGATTCAATTCgagacttatttttttaaaagaagaaaacggAGTTGAGTCCCTCCGCAAGCCTCTAACGTGTCAGCCTTTAAAAGTGAAAACCGAGATTATGCAATTATGAAACACACCTGATTTTATTCAAACGAACGGAATGATAGAAATGGACTAAACGGCGACTCTTGCGCTGGTTTGATTAGAAGgtctggaaatgtttttttggccGGATGAGTGATTGACTGCTGCGGTGCTCGAAGGCTTCGAGTCGAGCTGCTGTTTGGTGTTTTGAGGTTCCACACTGGAGGAGTCCAAAGTCTGATACGGACGCTAAAAGGGGAATTTTCTGACAGACTCTACCCCGTACCTCACTCTTATCTTCATGTATTTATAAGAAACTGGCTCTGTTTGGAAAGCTGTTTTTCTCTGAGTGAAAgaaactctgaaaaaaaaaaaaatatttatgatgtaCATACTCAAAATACACCACCGCCCCTCCCCCTCACCCACACCaaataaaatgatgcaaaagttgcaaaatgtatttattatgtgaatgaaaaatgtcttttgtttcagaatatcgcagtgtgtatttatttacaatttttcagTTCTGCGTCTAAATGAAGTGCCATTGTTTCCCTTCATGCGTCTACTATTTCTAAACACGCAATGAGAAATATTTGAGTCGGTTTCGTATTGCAGCAAAACTGTTTAGAATAGCATATTTCAAAATTGGTTCTGCGTTTGCTTTAATCTTGACATTGTTCATCCGGCGAGACCTTGGAGAACTCAGGTGAAAATGATCttgaaataacaaatatatcCCTAATTTGATCattattcatgtttaatatGATATTTCATACTCGCttgagaaatgaataaatgattgcaGATATGCTCGTTCA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161849 lncRNA downstream 57032 2842052 ~ 2842281 (-) True G109544
TU161843 lncRNA downstream 70690 2825428 ~ 2828623 (-) True G109538
TU161836 lncRNA downstream 90559 2808376 ~ 2808754 (-) True G109531
TU161823 lncRNA downstream 218975 2677203 ~ 2680338 (-) True G109522
TU161940 lncRNA upstream 205065 3113842 ~ 3128916 (-) False G109600
TU161947 lncRNA upstream 435153 3343930 ~ 3418605 (-) True G109607
TU161957 lncRNA upstream 715865 3624642 ~ 3625012 (-) True G109614
TU161958 lncRNA upstream 720031 3628808 ~ 3629417 (-) True G109615
TU161994 lncRNA upstream 800490 3709267 ~ 3717083 (-) True G109638
XM_043260444.1 mRNA downstream 198364 2700321 ~ 2700949 (-) True LOC122360106
XM_043261422.1 mRNA downstream 888647 2000781 ~ 2010666 (-) True LOC122360634
XM_043260182.1 mRNA downstream 1148341 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 1179198 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 1194592 1684904 ~ 1704721 (-) True foxo6a
XM_043260891.1 mRNA upstream 6878 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA upstream 30214 2938991 ~ 3064578 (-) False ascc3
XM_043261376.1 mRNA upstream 775341 3684118 ~ 3699070 (-) False hace1
XM_043261375.1 mRNA upstream 775341 3684118 ~ 3699070 (-) True hace1
XM_043261378.1 mRNA upstream 775341 3684118 ~ 3695823 (-) False hace1
TU161510 other downstream 2016561 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2266416 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 2604328 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 2620839 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 2621234 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 219284 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 1185980 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 2323434 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 2326869 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 2450733 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile