RNA id: XM_043260906.1


Basic Information

Item Value
RNA id XM_043260906.1
length 2847
RNA type mRNA
GC content 0.41
exon number 4
gene id ncalda
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8961054 ~ 8996986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTGTTGAATAGATTCATTTAGTCTTGGTGGTTTCTGCTAGCTGCCAGCATCATCCTCCTCATCGTTAGGCATAAATAGCCAGGTTATGGACTGTTGAAGGCAGTGGATAGcaggggaaaaataaaatagaaaaagagTGCTGTCTCGTGAAACGAAACCATGGGGAAGCAGAACAGCAAGCTCCGCCCTGAGGTGATGCAGGACCTGCTGGAAAGCACAGACTTTACGGAGCATGAAATCCAGGAATGGTACAAGGGCTTTCTACGGGACTGTCCCAGCGGCAACCTCTCCATGGAGGAGTTTAAGAAAATCTACGGAAACTTCTTTCCTTACGGAGATGCCTCAAAGTTTGCCGAGCACGTGTTCCGTACTTTTGACGCGAATGGCGATGGCACGATAGACTTTCGGGAGTTCATCATTGCGCTGAGCGTCACGTCACGAGGGAAGCTGGAACAGAAGCTCAAGTGGGCGTTTAGCATGTACGATTTGGATGGAAACGGATACATCAGCAAAGCAGAGATGCTGGAGATTGTGCAGGCGATTTATAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCAGACAAATGGACACCAACCGAGATGGAAAACTGTCTCTGGAGGAGTTCATCAAAGGGGCGAAGAGCGACCCGTCCATTGTGCGTCTGCTACAGTGCGACCCCAGCAGCGCGGGACAGTTCTGAGATCAGCGTCTCGTGCTtcaaccttttatttatttatgggttTTAAGTTAGTTTTTGATATAGTCGCTCCTTCCACTCGCAGGGAAATGATGGagggtcaggtttttttttccagagtaGGGCATCTGGGTCTCATCAGATTGAGCTTGGCCAGatatagaaacacacacacacacacacacacacagttattgGCCGTGTTATCTCTGTAGGGAGCCGCGCCGGGCCTGCAAGAGGCCTGTGATGGAGTGAATTAGGGTAACTAGAGCATTTATCTGAGCTCGAATCACTTCCTGATTAGAAAAGAGGGTTCGTGTCAAAGTACGTACGTAGTCagttttgttcttattttctCTGGGTTTTAGATGAGGCTGTTTAAGCTCGACTAAAACAGGAATATAAAGTGCACTCGGTAAAAttctctactttttttttttttaattgaaaaaaatatctgatGCCCGAGTCAATAGCGTGTTAACACCTCAGCCTTAGCGATTTAAATATTGGgttattttgtactttatttagaCTGTGTAGTTTCTCTCAGTTCATAGTTTGGCCAGCATTATTATTGTCAGATcgcagtattattattattattattattattattattattattatccagcGGGACCAAGAAATCAGGCATTCAGATTTTCCAATCGTATGAATCCCCACGCCGTGCTTCGTCTAAAGAGCCTTATCACTTAGTGCTGGAAGCGCACATCCaattttgtgtgaattattaGTTTGGTTATAGTCGGGACAGTCTAGGTTTAAAAGACACGAAATGAACTGCGTTCTCTTTTACCAGTTTTCTAATGTTTATACTCTAGTAACCGTAGGCTTGTatataaatctgaaatatcGGACACGCATGCAAATCTGTACTCAGAGTTCCATCTTAGGATGCAGCGATCggttttattgacatttttagcAAACGCATGTAACCACGTTTATCTGCATTTGTGGACAGGAGAGTATTTGTGTAGTGTGTATgcatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatatcaGTTCCAGCCCTGTTTGCTCATCCTGGTTCTAGATGTTGTGATGCATCGTTCGCAGAACATTTTCGTTATTGAAGAAGAACTAAAGCTTTATTGATTCAAAgctaatatgattttaaaatcacatttatctgCTAGAAACTCTGGATCGTACACATGAGCATCGTCGAGTTACTGAACTGCCTTATACACACTCAAGTGTTTCTGTGGGTGAGTGATTTTTATATGGCTTTGTTCCCATTTTTTAATCGAGCTTCAATTGCAGCGCATTCGCTTCGATCATCCATCTGTTGAAGAGCCGAGCTCAATGTTCTTCCCGTTCACCCCTTTAATGGATCGTGTAGTTACGTTGACGGCCTTTCgcttaatatatattaatctgTCATTACCGAGTCAGACGCTCGTTTCAAAATAACATCAGGAGCGTAAGAGGAAATAGGACCAATGGCTTTTCAAATGCCCCTTGCATTCACGTTGCATTCCATTTCACTTGCGGAACGAATTGAACAATAGGTAGAGAGCATTTATTCAGACTCCTAATAGTTCCCGCGTCAACCTGTGCCCGCCGCTTCTACCGATGTTCAATGTTTTCAGATGTCCTCGTCGACGTCAAATGCCTCACCACAGTGCATTCGGTTCTGCTATACTGtcaatgaatgtttttattgtttttatttgacttgTTGAACAActgctgtttttgtaaaaaaaaaaaatatatagaaaagtGGCAGATCAAACTGCTCTGTAATTTCATGtcttatgcatattttatgtaggtttttttttgttttggttttttttttacatctgacGTAACATTTCTGTATCACGGTTATATCATGTGGTCAGGTGCCAAAAATATGAAAGCAGTATTGTATAAATTTATACTGTACAATTGTTATTTGTCAAACAAATTGTTTGTAATTGTTGCATTTTGTAGATTTTGTATGGTAATCTGTATTTTGTGACTGTAGATTTGAGACATAGAGATTTGTTTTGGTTATCATATTGAGCAGAAATTAAATCTTGAGAGAACAAAGTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163682 lncRNA downstream 115061 8845525 ~ 8845993 (-) True G110807
TU163638 lncRNA downstream 370420 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 409502 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 409502 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 721878 8237758 ~ 8239176 (-) True G110548
TU163727 lncRNA upstream 22711 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 26462 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 29221 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 53059 9031135 ~ 9031449 (-) True G110852
TU163808 lncRNA upstream 148609 9126685 ~ 9191339 (-) False G110897
XM_043261997.1 mRNA downstream 3604 8946171 ~ 8957450 (-) False grhl2a
XM_043261996.1 mRNA downstream 3605 8946171 ~ 8957449 (-) True grhl2a
XM_043261561.1 mRNA downstream 16406 8938547 ~ 8944648 (-) False tapbpl
XM_043261560.1 mRNA downstream 16408 8938547 ~ 8944646 (-) True tapbpl
XM_043262059.1 mRNA downstream 98525 8857464 ~ 8862529 (-) True LOC122361100
XM_043260162.1 mRNA upstream 48904 9026980 ~ 9029706 (-) True id4
XM_043260132.1 mRNA upstream 125438 9103514 ~ 9110755 (-) True cep76
XM_043260311.1 mRNA upstream 134186 9112262 ~ 9118118 (-) True ptpn2a
XM_043260313.1 mRNA upstream 134186 9112262 ~ 9116319 (-) False ptpn2a
XM_043260316.1 mRNA upstream 167824 9145900 ~ 9148999 (-) True LOC122360027
XR_006252934.1 other downstream 313499 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 324832 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 644369 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 658809 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 744459 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 167854 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 292895 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1768717 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 1883875 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 1883875 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile