RNA id: XM_043260916.1


Basic Information

Item Value
RNA id XM_043260916.1
length 4673
RNA type mRNA
GC content 0.42
exon number 16
gene id bcam
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15430820 ~ 15476204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCAAGTCACTGCCATCCGCATCAGATTTCTTGCGCCAAGAAGGACTGGGGAGCGCACCGCATTACTGCGAGTGAGCACGACAGCAGAGCAGAGGGCGAAGGAGCTGTACCGAGACCAGAAGCTGCAAAGAAACACAACGGCGCGACGCCAAACAAAGCCGCCAAGTTGAGACGCAACTATGGAGAGAGCGATGTTGGGACGCTTCGGGATTTTCTGCACCTTGCTTGCTGTTGCGCTGCAAGTATGTCTGGCTTCGGTCACGGTCAAGGTGACTCCAGAGGTGGAAGTGATTAAAGGGGAGACAGCTAAACTGCATTGCAGCTATACCACATCTGCACCGGGCTCTGCCATTGTGGTCCAGTGGTTGATTGAGGTTGCAGGTGCAAGAAAGCAAATTGCTTTCAAGTCTCCACAAGGTTTTGGTGTTGATTCAGGCACAACAATGACAGATCGCTTAACCATGGGAGAAGACCTGTCCATCACCATCTCCCCAGTCATGGTGGAAGATGAGAGAGTCTACATCTGCCAAGTGTCCGCAGGAGCTTTAGGGTTCTCTGAAGATAAGACCCAGATCAAGGTTTTCTTTGCTCCAGAGAAGCCAATAATTACAGGAAATAATCAGGCTATTACCGTCAGTCCCAAAACTACCACCTCTGCTGAAGTGGGCAAATGCATCAGTAGGAATGGTTACCCTGAGCCTCGTATTATCTGGTTTAAAGATGCCACCCCTCTGCCTGAAGTAAAGGACCAAAAGGATActgTATATATGATACCTAGTCTGGTGAAAGAAGCCTCAGGCCTGCACACCATGACCAGCACGCTGTTCATGAAGCTGGTTAAAGCCGATGCTAAATCAGTCTTCCACTGCACGGTGGAGTACACCATGCCAAACAACCAGATCAAACAGGAGAGCTCCGATAAGTTCAGCCTCTCGCTGCTCTATTCGACAGAGACGGTTTACTTCAAACTGAAGAACCAGGGGCCAGTGAAAGAGGGGGACGATGTGGTCATGGAGTGTGAGACTGATGGAAACCCTCAGCCAGAGTTTGAATTTTATAAAGAGGACGTAAAACTGGAAGGATTAAATGGAATGCTAAAAGTGAAGAGCGTCACTCGAAAGGATGAAGGAAGCTATAAGTGTGAAGCTCTGGATTTTGATGCTGAAGACGATGTCGACCTTTCCAAAACTCTAAGCTTAAATGTACACTATCTTGACCCTGTGGCAGTGTCCCCAGAAGGCCCACTGGTTGCTTCTAAAGGAGATACCGTGGAGCTTCAGTGTAAGACCAAGTCCTCTGATGAATACACCCTGCAGTGGAGAAAGGACTCAAAGGAGCTGTCCCAGATGGGTGTGTTGACTCTCCAGTCAGTAACTCTGGCTGACGCtggtgtgtatttatgtgtcgGAGCTGTACCTTCAGTGCCTGGTCTCCGAAAACAAGCCAATGTCACCCTTACAGTCACAGGTGCACCTGAGATTGCTGCTCCACAACATGGTTTTGTTGATAAGGAAGGAGGGATGGTCACCCTCAACTGCTCTGTTCTTGGGTATCCTGCTCCACAGTTCACCTGGACACCTTCTGGAAAAGAGtCAGTGACAGTAATTGGGAATAAGTTTATCAGCACAGTCACTCTTGAGGCCTCGGCTGCGGTTCTAAAGGATGGTGTGATTTGTGAAGCATACAACAAGAATGGAAGAGACAGCAAGAGCTTCAAGGTGTCCATCAAATCAGATCCAGACAAATCATCAAATCCCAATGCTGCTAACCGAGCGGAGAAACAGCAGGGAGGTTCCAGCGCGGTCGTGATCGCCGTGGTGGTGTGCGTTCTGCTGCTTCTCATCCTGGTTGCTCTGCTCTTCTTCCTTAGCAAGAAGGGCAAGCTGAGCTGTGGGAAAAAGGACAAGAAAGATGTGGCTTCTGGAGGAGAGAAAGGTAGTATTGTGGTGGAGATGAAGTCCAATGAGAAAGGCAATGAAGGGGCTGTTCTGCTAAACGACCCAATTGCAAAACAGTGATAAAAAAGGTACAAGTAAAAACAAGATCTTCAGACACCtagaggatgatgatgatggaggaCAAGAGAGGAGACGGAGAAAAGAGATGATGAATTCTTTTTAGctgtacagttttctttttttgaaagattGTGGGAGGGGCTATGATGTTGAACTGAGGGTGGGTTTCAGTTTAGAAGTGGGAGGggcaataaatgtaaatctggCATTATTTTGATAAAGCTGCATACTGTGTCCTGATTACGTAATCAAGCCAATCTTTGTAGTACAACTCTGTGAAAATGTGGAGTTCTTCTactcaaaacaaagcagaaaattCACTGTGGACACTGGATGCTGTGCTGCACCCTGGTTATGTCGATTAGTTTGTTAGTGTTGTTAAATTAGTGCAGGACCGCCTCTTTTTGCATTACAAACTGCACTTACTATGTACATTTTTGATTGCGAACTGCACACATGCCATTACACTGATTAGCAAACCCTACAGACCACTATACGCTTCGGCCGTGATGTGCATGGAGCATATGGATGTGCCATTATACACACGGTCCAGCTGTTCCTTTCAGCGCCTTAGATACACCTGTATGTTTTGAGCTATAACCAAAAGCTAGAGGTGGCAAAAAAGAAATAGCATGTGTGTGAGAATCCCATTTAAACCGTATATCTGAATGCATGGACCCATTCAGCTCAAGTCTGAGAGTTGAGGAAGAGTTACAGAACTAACTCAATCATCTCATTCACTCTGTACTGCACTGAATTCCATTCGACAGCCCAAACATGTTCAAAGACTTTAACCTAACTCTGTAATTATTACACATGGGTTAGTAAGAGGACAggtctattttttaaaatgcatcctGTAAGGATTAATAGTTCACTTTTTTATATAGTCTCAACTTCACTATTCTTTTGGATGATTAAAACGCTGATTGGAAATGTTCTACTCACGGAGCAGAAATCATAATGAAAATACTGTCCCAATATGCTATTCTGTTTGAAGTTTTTCCGACACTATTAATATCACtaagtttttcattatttatatttagagaAACATATCAAATGAAACACTTTTAGCCTTTTCTTACAGCTTAAAATTTTTCGCTCTCTGTTTAGTTATGTGAAACCCCAAGGCTTTATGCTTCCGCAATTCACACAACAACAATTTCTCTTATCATTTACTTATcctcatatcattccaaacctagataacttactttcttctgttgaacaaaaatgaagatttttttttttaaaactggttttgtacgtaatgaaagtcaatggagtACAGAACCAAATTTGATCCCACtgattttcactgtaaaaacaaaaaaaaatagaaaattaaaaatgacatgagggtgagtaaattatgatatACTGGAAATTTTACTTTGTGGGAGAACTATCAATTTAAATTCAGAGAGCAAGgagctaaacaaaaaaaaggtcaaagtTGAAGGGCAGGGCCAGAATTGTAggctaatcttttttttgttgttgttgttatttatcaATATTGCTATCCATTGCCGCTTTCACCTTGTttcctaaaaccaaaaatatgagTGAACATGGGGtgcaaaaatgatttctttaaGCTTGTATACGACTTTACAAGTTTCTTtgttgtgcatatatatgtattttgtatcTTTTTCAGTAAAAGCACACTGTTGTTCAGGTGGCACAGCTGGAACATTCTAGAATCACTATGTTGTTGGAAAACCCTGTCATTTTTTCCCAGGCCCTACTGTTAAACAAAGCGGTGAGCCTTGTTATTTACTTCAAATAACAGATTCACAAACTGCTGTTCTTTGAGTCGGGTCCTCCGCGTGTCAGAGCAACACCCAGGGACAGTTTTACAAACGTTTATGCAATTTTTGAACATGGTCACAGACacttatacagtatacatacagTGTTTCTCTGTACCAACAAAACAGTGATTCTAGAGTCTCTAAGCAGCAGGTTTGGTACAATTGGATGAGGGTAAAACGAGGACTGAGGAGAGGTGAGGTGGATAGAGAGTGGAAGAGGGCTTGGTTTggatataacattattatttttttacctacTGAGTCTTTGTGTGTAGTTGAGAgtattttaatgaatcattatgAATTGTCCAGTAGACACATGGAACGTGAGCTAAAGTATCTCTGAACATCTCAAACACTGGAAAATGTATGATGGCCCCTTTATGAAGGCCTCTGTTTTAGACTCCTCatagaatattttttacttttatcttgatgctcttttttacatttaatgatttCATTTTGCAAAATGTGGTCATGTGTTCTGTCAATGCAATGTGTGATTTATAGTTATGGTCAATATTTGCATACAAGTTATTTGAATGCCCATTTCCTAGAGTAttgtgtaacaaaaaaaaaggttttcttaaaaatacacgTCTTAACTACTGAACGATTTAGCAATTTCGCTGGTTTTGCAAGAAAGAAGAGCGCTGTTTTGAATAAGATGTCATACTTTATGGATGTCTGCAATTGTTTGTGCCCTCCaggtatactgtatatttgtggTACTCATTTGTGAACTTTGTAGCTTGTCTTCTTCTGATTGGAACTGTGTAGAGTTTATACtgccaaacaaaaacaacaacaactacaacaaATCTGAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167042 lncRNA downstream 2158 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA downstream 10393 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA downstream 10393 15418906 ~ 15420427 (-) False G113151
TU167055 lncRNA downstream 17977 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA downstream 19807 15409331 ~ 15411013 (-) False G113136
TU167104 lncRNA upstream 189033 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 189033 15665236 ~ 15672119 (-) False fxyd6l
TU167106 lncRNA upstream 189033 15665236 ~ 15672119 (-) False fxyd6l
TU167107 lncRNA upstream 189033 15665236 ~ 15671011 (-) False fxyd6l
TU167108 lncRNA upstream 189033 15665236 ~ 15672119 (-) False fxyd6l
XM_043261447.1 mRNA downstream 55516 15365188 ~ 15375304 (-) False LOC122360651
XM_043261446.1 mRNA downstream 55518 15365188 ~ 15375302 (-) False LOC122360651
XM_043261445.1 mRNA downstream 55518 15365188 ~ 15375302 (-) True LOC122360651
XM_043261448.1 mRNA downstream 68680 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 88049 15342331 ~ 15342771 (-) True LOC122360842
XM_043260093.1 mRNA upstream 16745 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 29856 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 29856 15506059 ~ 15546442 (-) True cadm4
XM_043261114.1 mRNA upstream 29856 15506059 ~ 15546438 (-) False cadm4
XM_043260918.1 mRNA upstream 154338 15630541 ~ 15639888 (-) True si:ch211-79k12.1
XR_006252733.1 other downstream 517174 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1129201 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1746911 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 4019043 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4144388 11270664 ~ 11286432 (-) False G111450
TU167049 other upstream 16618 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 340776 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 381396 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 536761 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 663116 16139319 ~ 16141235 (-) True G113267

Expression Profile