RNA id: XM_043260926.1


Basic Information

Item Value
RNA id XM_043260926.1
length 1893
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122360376
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27690440 ~ 27693938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGAGGAATGCTGGCAGGGGATGGAGTTAATCTGAAGGGGGAGTGCCGCAGGAGAGAGTCTATATATACATGTGGACCCTGGGAGGCTGGTGCTTTTAGTTGGACTCTGTTGGAACACTAGAGAACACCTCTGAACATTTCACCAGACTAACGACAAGGGTAAGAAGGATAAGACGGCCTCTCTGATTTGAACCACAATGAATCGGGTGGAAGAATGGGTTTTGGAGAACAAGGAGAAGATCGAGAAAGGAGTGGAAATCATGGGACAAGGCTGCGAAGTTTTAGCAGCCACCGTGGGACAGTTCCACCCCATCCTGGAGGCTGTGTTTTTGGCCTCGGCCGAGCTCCTCGGTAACCCAGAAGGCAAAGAGGCCAAGTTCCTTGCTGAGCAGTTCGAAAAGATCAACCAGAAACTTGAAGGTATTCGAGATGAAATCGACCAAATCGCGTTGGAGTTGCAGCGTACGACCATGAATAAGCAGAACTTTGACTACGAGGCGAAGATAATCAGTCAATACGAGAAGTTTCAAGACTTTGTCAATGCTAAGCCCAAGTtcaaggagaagaagaaggagaagttTATAACCCAGTATGAGAACACCGGTCGTGACCTGAACATTGATTCCTTGTACAATGCTGTAACTGGTGAGAATATCTCTGGAGATGCCATGTTGGACACGGTGGTGACCACAGAGCAAAGGAGCAGGAGACCAGTGGAGGAGTTCTGTGCCAGACTGAAGAAGCTATTTGTCATGGGAATTATAGCAGTCATGGGTCACACCGCCCTGAAAGAGGGAGCGGTAGGCGAGGCCATGGTGAAGAAATGGCAGGATCGCATGGAAGAAGTAGAGACACGTATGAAAGCGGCTGTGGATGACTGCATTGAGAATTTCCCTGTGCAAGCCAAGACAGATGTGGAGCGAGAACTTCTGGAGCGTCAAGCCAACGTTGACCCTGAGTTCACGGGATTTATACTGGATATCCTTGCAAAGAAATATTACTGGGTTTCCTGGTCAGTCAGGGTCTTCAACCACAGTGGCATATTCTTCTGGAATTGGCTCGCTGGCAAAAAGTACCATGGAAGTGGTGGAGGTGGCAACTTTTTTGATCTTCTGACCCCAAACAACATCAGAATTGTGgtgtctttcagtgcagaccCGAAACCGATTAACAAGAGCCAGATTGTAGATCAGATAGAGACGCAAAAGTTGAAGGGGAACATGCAGTCCGTGGCTCAGACGCTTTGGAAGATGCTTCCCAACACAGTGGTTCATGCCATTAGCTGCTATAAGAAAGtagaagagaaaaacaacttCCAGCCAGAATGTTTCTACTTTGGGAGTCACAAAAAGGCATACCTGTGCATTCATTCTGAATAGACATGTGAAAGATTGAATTGGCAATCAGCCGTTTACGTATATACTTCTGGTTTAGATATTGTGTTTGTATAAAATAGCTGAACATTATAAAGCAAACGATGACTTAATTGTTACTGTGCACCTACAATGGGAAAGTATATTATTGCCGgctcacttttattttggcatgtCAGTGCATAAAagaaccaaaaatgaaatttatgtgtaaacaaacataaatgcgTACAGTCTTAgataaaaaacattgtatgtTTTGTAATTTAGAATACATTTGAAAGAGCGGTTGAGTGGAGAAAACTTATATGACCGACAGATTCATGGGATTTCACTGTTAgtcattaaaaagcatttcatttaaactttagATTGTAGTACAAGTCTTtactggggggaaaaaatgctataataagCATTCGGTTAACTAGCTATATATTCTCTGTAACCCAAGAATCATGTCCGTTTCTTGTTTATGATTGTATGtaatcacaaataaaacatctatGATCTAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172604 lncRNA downstream 13181 27675988 ~ 27677259 (-) True G116833
TU172603 lncRNA downstream 13581 27675988 ~ 27676859 (-) False G116833
TU172570 lncRNA downstream 77940 27612068 ~ 27612500 (-) True G116814
TU172568 lncRNA downstream 81475 27608212 ~ 27608965 (-) True G116812
TU172536 lncRNA downstream 98419 27586903 ~ 27592021 (-) False LOC122360078
TU172605 lncRNA upstream 7188 27701126 ~ 27704934 (-) True G116834
TU172606 lncRNA upstream 12668 27706606 ~ 27707458 (-) True G116835
TU172656 lncRNA upstream 258630 27952568 ~ 27954707 (-) True G116865
TU172658 lncRNA upstream 266693 27960631 ~ 27961680 (-) True G116867
XM_043260929.1 mRNA downstream 320 27685267 ~ 27690120 (-) True LOC122360378
XM_043260930.1 mRNA downstream 516 27685267 ~ 27689924 (-) False LOC122360378
XM_043261566.1 mRNA downstream 52909 27631766 ~ 27637531 (-) True LOC122360733
XM_043260268.1 mRNA downstream 60166 27628557 ~ 27630274 (-) True LOC122359999
XM_043260097.1 mRNA downstream 62924 27622629 ~ 27627516 (-) True LOC122359885
XM_043261497.1 mRNA upstream 202790 27896728 ~ 27900760 (-) True tmem176l.4
XM_043261496.1 mRNA upstream 202790 27896728 ~ 27900757 (-) False tmem176l.4
XM_043261984.1 mRNA upstream 239136 27933074 ~ 27939751 (-) True mex3a
XM_043260134.1 mRNA upstream 272504 27966442 ~ 27971009 (-) False zmp:0000000881
XM_043260133.1 mRNA upstream 272504 27966442 ~ 27970007 (-) True zmp:0000000881
TU172557 other downstream 62780 27623427 ~ 27627660 (-) False LOC122359885
TU172389 other downstream 110576 27520190 ~ 27579864 (-) True LOC122360079
TU172454 other downstream 329611 27358707 ~ 27360829 (-) True G116745
TU172373 other downstream 692081 26994167 ~ 26998359 (-) False LOC122360878
TU172354 other downstream 734606 26954220 ~ 26955834 (-) True G116677
TU172608 other upstream 13778 27707716 ~ 27727944 (-) False G116836
TU172609 other upstream 98766 27792704 ~ 27804770 (-) True G116836
TU172659 other upstream 269550 27963488 ~ 27964958 (-) True G116868

Expression Profile