RNA id: XM_043260939.1



Basic Information


Item Value
RNA id XM_043260939.1
length 3977
RNA type mRNA
GC content 0.46
exon number 18
gene id usp45
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23582993 ~ 23609841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gttaaaaaacaaaaccccaCAGCACTAGTAAAACAGCTCTTTTTCAATAACAGTAGATATACAAACGAGTTTGGCCATACAAGTATCCGTAGTGCGTCGATGAGGATGAGGCCACGTGACACATGTGATACTTGTGCTTTCTGTTCTTCTCCAAATGCCACCAAATACGCGGACAAACTCTGTTCACCAGAATATTACCTGCGTCTCGGGATTACACGATTTCCGATTGTCGAAGTGTTAGATCCGAACGCCAAAACTACAGTCTGAAATTATTCCGTATTTATAAACTTGGAAGCATATGTAAGTTATCATCTTCGCTCTTCCACCTGGCCACTTGACAACTGACGTTCGCTTTGGTAGTGAGCCTGGAGAGGAGGGGACCATAAACAGGATACAAATGCGGCTGAAAGACCCCTTCTCTTTAAAAACCGCAGACATGACAAAGCGGTCTAACAAGCCAAAGAAGCCTCGCGATGAAGACTCATCCGACGAGGTTGGCGGGTTGACATGCCAGCATGTGAGCAGGGCTGTGGACCTCAGCTCAGTGAAGAAGGCAGTGACGGGCAGTCTGTGGTCGGTGTGCTCCGATTGCCTCAAAGAGAGGAACATGCATGAGGGAGAACCAGCAGGAGCACATGACATCCTTATGTGCCTCAAGTGTGGGTTCCAGGGTTGTAACCAGGCTGAAACTCAGCATTCCACAAAACACCAGCAAGCTCATCACTCTGACTCTCACTGTATAACCATCAGCCTCAGTACATGGAAAGCATGGTGTTTTGAATGTAAGGAAGAGCTCTCCACACACTGTAATAAGAAAGCGCTGGCTCAGACTCTGGATTTCCTGCAAAAGCACTCAGCAAAGGCCACCTCAGgAACAAGCTCAAAAATTATCAGACTCAGAGAGGAACCCACTGAGTATGTGGACACTCAGAGAGGGAAGACTCCAGTGAATAGCACACTTATCCCAGTCAAGGGCATCAACAACCTGGGTAACACCTGCTTCTTCAATGCTGTGATGCAGAATCTCTCCCAGACCCACATGCTGAATGACCTGATTCAAGATGTCAAGGAGAAGGGACATAAAATGAAGATTTGCCCCTCTGCTGAGACTAACTTGGGGCCATTAACGGTGACGTTGCCCAGCCCAGAACCCCTCACCTCAGCCATGTTCCTTTTCCTACAAAGCATGAAGGAACCTGGGAAAGGGCCTGTCTCCCCCAAGATCCTTTTCAACCAGCTCTGCCAGAAGGCCCCTCGCTTCAAGGGTTACCAGCAACAGGACAGTCAGGAATTGCTGCATTACCTCCTGGACTCCATGAGGGTGGAGGAGACAAAGCGCATTAAAGCAGGCATCCTCAAAGCCTTTAACAACCCCACGGAAAAGACAGCTGACGAGGAGACCAAACGACAAGTGAAGGCTTATGGGAAGGAAGGAGTGAAAATGAATTTTGTCGATCGCATTTTTGTTGGAGAGCTGACCAGCACCATAATGTGTGAAGAATGTGAACATATTTCAACAGTGAAGGAAGCCTTCATTGACATTTCCCTTCCTATCATAGAGGAAAGAATCTCGAAGCCTACGAACCCTGGTAGACTAGTGAAAAGTGGGCGGGAGCAAGATGGTCCGGCTTCCCATGATGACTTATCAGCTGGCCAATCACAAACCAATAGAAACAGCAGGAGGTTGAGTGGACAGAAGCTGCAGGGTCGCCATTCGTCCGCTTCTCATGATGACAGAGGCGCAGATTCAGTTTCTAGCCGACAAGAGGAGGAGCTCTGTGTGGCTGGACGTGGCCTGGCCAGTTGCCGCGCAGATACGATGGGCAGCCAATCAGACTGCAGCGAGAAGGATTCCAACCTGCAGGACAGCAGTAACGATGCGGACAGCGAGGCCTCCGAGAGCGAATGGTCACCACGAATCCCATCTGTGTCCACTCATAGCAGCGCATCGGATAGAGCTTCGACCACCACGACCTTAGCCTCAACAGCACACAATCCAAGTCTAAAACCAAACCTGAGCCCGAGTCCCTCTTCTTTAGTCTCCATTAGACCTCAGCAGGGCGGCGCTGTAGAGCAGCTCGTCAGTGCTGTGTCCAAGCTAGGCCTGGTGCACACTTCCACTGACACTCTACCTGTCAGTCACAGCCCAGAGGAACCGTCCGAGGTCCGGGAGAGAGACCGTCAGCACCATCAAGGGGCATTCCAAGCCCTCTGTCACAGTTACACCCCCAGCTCTAAAGAGTGCTCCGTACAGTCCTGCCTGCATCAATTCACCTCTGTTGAGCTGCTGATGGGCAACAACAAACTGCTCTGTGAGAACTGCACTGAAAGAAGGCAAAGACAGATGAAGAGGAGCGataaGAAGGCTGAGAAGGTGTACACCAGTGCCCGTAAACAGATGCTCATCTCAGCACTTCCTCCAGTGGTTACTCTTCACCTTAAACGATTTCACCAGGCTGGGATGAATCTGAGGAAAGTTAATAGACATGTGGACTTTCCTCTTTTGCTAGACCTGGCACCTTTCTGCTCAGCCACTTGTAAGAATCTCGGGTTAGGAGAGCGTGTGTTGTACAGCTTGTATGGCATTGTGGAGCACAGTGGATCAATGCGAGGTGGGCACTACGCGGCCTACGTGAAGGTCCGCACCCCCCAGCGTAAACCTGAGCAGCGCTGGAACCAGTCAGGTTCCAGAGAGGCCAGCTCAGCCCCACAAGGTCAGTGGGTGTATGTCAGCGACACCAACGTTCAGACTGTACCGGAGTCCAGAGTGCTGAACTCTCAAGCTTATTTACTTTTCTACGAAGAACTCCTATAGATCCCGACGGACACGTGAATGAAAGATAATCCAGACGAATGCAAAATGCAATATCGGCAGCGAGCACTTACTGCATGACTATATCCCTGTATTTTAACGTAGGATCCCATATACTAAAAGCTCTGTCTTATGGCTCATTCATCACTCAAGGTGATCTGAATTAAAAATGGGAGCCATTTATTattgatgtaaaataatattacgagtttaagttatttaaattttacagctAATATTTCAGCTTaacattttttgggggggggtgtTCACTTTGCAGGAGAAATTGCCAAAGAGTAATTTAGGATAAATATGTATAGAATATATGATATGAGAGAGAGAATTGTGCCAAAAGAGTCTGTAACCTCTGTTGTGAAAGGGAAACTGCACAGTATGCAGCTGTTGCTTTGAGAGCCGTTTAAAACCTGTCCCATCCTGCACTGGATCACACAAACTAGTCGCATACGCACACATATGAACACGCAGACAACATGTCAGCATTTACTTGGAGACAGTTTAATATTCAGACAATTTGGAGAGAATTTCGTATAAGGTTTACTTgacaacaatataataaattgtaatttgctgattttcattcatttttgtgttaatacATTTAACTTTGGTTTGCTTGATCAGTactaatgtttttgaatgtagCTTGGTTCAAATGATAGAAATGGGCCCTCTCTGTAAAGTTTTAGGAATTTATAACCTGGATACACTTCTCGGTATCTAGTTATTAAGGAGTTAGTGCAATATTCCTGGACTTTGCCTCATGCCtaatttttctatttctgaaatgaatacgagtggaaaattattatttcttctcGTGTTTTTTGAAACGACATCAGTGCCTACGGTTTATGAGGGCTGAGATTGTTTTGCATGTCTTTAGCAAAGTATTCAATCCATACAGGAGTATAAAGAGAACGGTTTGTGTATATACTGATTAGAAATATACATAattgtatgtaaaatatgtatcttGTTCAATACTATTTATTCTGTTTACCGGGCAGATATTGTAACACCATAGATTTGTGTGGTGTATAAGGCTTCAGGGTTCCTCAGGCTGTTCTTTTGCTTGAATTTTGTGAACATAATCCagttataaatcatttaaaatgatcatttaaatacatttagttgaAGAAAA

Function


GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 255100 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 393343 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 415053 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 505123 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 206063 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 207066 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 210685 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 210685 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 211018 23820852 ~ 23822288 (-) True G115914
XM_043260065.1 mRNA downstream 3112 23572971 ~ 23579881 (-) False pnisr
XM_043260063.1 mRNA downstream 3112 23572971 ~ 23579881 (-) False pnisr
XM_043260064.1 mRNA downstream 3227 23572971 ~ 23579766 (-) True pnisr
XM_043260068.1 mRNA downstream 10676 23567058 ~ 23572317 (-) True coq3
XM_043260066.1 mRNA downstream 16149 23556775 ~ 23566844 (-) True faxcb
XM_043260465.1 mRNA upstream 58231 23668065 ~ 23675345 (-) True mchr2a
XM_043260941.1 mRNA upstream 67156 23676990 ~ 23736637 (-) True me1
XM_043260942.1 mRNA upstream 67156 23676990 ~ 23736620 (-) False me1
XM_043260773.1 mRNA upstream 142502 23752336 ~ 23787700 (-) False snap91a
XM_043260771.1 mRNA upstream 142502 23752336 ~ 23787699 (-) False snap91a
TU171080 other downstream 58611 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 649026 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1493939 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1614458 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1779189 21801475 ~ 21803804 (-) True G115149
TU171098 other upstream 60064 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 716873 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2057985 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2769838 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 3197286 26807120 ~ 26809146 (-) True G116654

Expression Profile