RNA id: XM_043260942.1


Basic Information

Item Value
RNA id XM_043260942.1
length 1741
RNA type mRNA
GC content 0.49
exon number 13
gene id me1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23676990 ~ 23736637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAACATGGCACACGCTTTAGTCAAACAGGAATCTGTCGAGTGGGAGATGCAGAAGTCAGCAGACCAAAGCAAGACCTTTGTTTACACGAAGAAGAGGGGGTATGATGTTACACGCAACCCCCActtaaataagATATGTCTTTCTGATGGGCCTTCAGGACCGTAATGAGAAGCTGTTTTACCGAGTCTTGACCTCAGACATAGAGAGGTTCATGCCCATTGTGTACACACCTACAGTCGGCCTAGCGTGCCAGCAGTATGGCCTTACCTTCAGGAGACCTAGGGGCCTATTTATTACAATTCACGACCGCTCCCACATCTCCACACTACTTCAGAGCTGGCCAGAGAAGGACATTCGTGCCGTAGTGGTGACAGATGGGGAGAGGATTCTGGGCCTGGGGGATCTGGGCTGCTATGGCATGGGCATCCCTGTGGGTAAACTGGCCCTCTACACCGCCTGTGCTGGAATGCCGCCTCAGCAGTGCCTTCCTGTTATGCTGGACGTAGGGACAGACAATGAGGAACTTCTAAAGGACCCTCTGTACATTGGTCTGAGACATAAAAGAATACGTGGACAGGCCTATGATGAGCTTCTGGATGAATTCATGAAGGCTATCACAGACAGGTATGGGGTGAACTGCCTTATCCAGTTTGAGGATTTTGCCAACATCAACGCTTTTCGTCTGTTGAGCAAGTACCGCAACAAGTACCTCACATTCAATGACGACATTCAAGGTACTGCTGCTGTGGCTGTGGCAGGACTGCTGGCTGCCCTTCGCATTACCAAGAGCAAAATGAGCAACCATATCGTTGTATTTCAGGGTGCAGGGGAGGCTGCAATGGGCATAGCTGAGCTCATCATTATGGCGATGGAGAAGGAAGGACTTCCTCGTGAGCAGTGTATAAAGAAAATCTGGATGGTGGACTCAAAAGGACTTATTGTTAAGGGTCGGGATCACCTCACCCATGAGAAAGAGAGGTTTGCACATGAGCACGCTCAAATGAAGAAGCTTGAAGATGTTGTGAAGGAGCTTAAACCCACTGCTATAATcgGGGTGGCAGCTATCGCTGGCGCTTTCACAGAGGAGATAATCAAGACTATGGCATCCTTCAATAAGAGGCCTATTATCTTCGCTCTAAGCAACCCCACCAGCAAGGCAGAGTGTACTGCTGAACAGTGCTACACACTCACTGAGGGACGGGGGATATTTGCAAGCGGGAGTCCTTTTGATCCAGTAACCCTTCCAGATGGGCGAAAGTTCTACCCTGGTCAGGGCAACAACGCTTACGTGTTCCCCGGAGTGGGGCTGGGGGTCACCGCTTGTGCAGTGAGACACATCCCTGAGGATATTTTCCTCGTTACGGCCGAGGTGATAGCAGAACTAGTGACCGAGAAGGATCTTGCAGAGGGACGTCTGTATCCTCCTCTCAGCAGCATCCGGGAAGTGTCCATCAAGTTGGCTGTGAAGATTGTGGAGTATGCCTACAAAATCAAAATGGCAACGCTGTACCCGGAGCCCCACGATAAAGAGGCTCTTGTTCGTTCGCTCATCTACAGCACAGACTATGAAGAGTTTGCTGTGGATTCATACAGCTGGCCCGAGAACGCCATGATCGTCCAAACATGTAAACTGTGAGCTCCCAAAATGAGATTTATATGGCAAttctcttttaaatgtaatttcttaaCATGATTACAACACTACTGTAAACCTCTCCTCAATAAAATGTCTTAGTAGA

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 349097 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 487340 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 509050 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 599120 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 79277 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 80280 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 83899 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 83899 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 84232 23820852 ~ 23822288 (-) True G115914
XM_043260465.1 mRNA downstream 1645 23668065 ~ 23675345 (-) True mchr2a
XM_043260939.1 mRNA downstream 67156 23582993 ~ 23609834 (-) True usp45
XM_043260065.1 mRNA downstream 97109 23572971 ~ 23579881 (-) False pnisr
XM_043260773.1 mRNA upstream 15716 23752336 ~ 23787700 (-) False snap91a
XM_043260771.1 mRNA upstream 15716 23752336 ~ 23787699 (-) False snap91a
XM_043260775.1 mRNA upstream 15716 23752336 ~ 23787699 (-) False snap91a
XM_043260774.1 mRNA upstream 15716 23752336 ~ 23787699 (-) False snap91a
XM_043260772.1 mRNA upstream 15716 23752336 ~ 23787698 (-) False snap91a
TU171098 other downstream 1692 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 67149 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 152608 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 743023 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1587936 22087649 ~ 22089054 (-) False eny2
TU171232 other upstream 590087 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 1931199 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2643052 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 3070500 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 3073697 26810317 ~ 26812909 (-) False G116632

Expression Profile