RNA id: XM_043260968.1


Basic Information

Item Value
RNA id XM_043260968.1
length 5553
RNA type mRNA
GC content 0.43
exon number 23
gene id clcn1b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8731697 ~ 8758899 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTGCCAGTTTGTGGATGGTGTGTTCCAGTGTATCTAATTGAAGAATCACGCGTCTCAGCATTTTTCTCACAAGTGCGGGTACTGTAACATAAGAGTGCGGCAGCGCGTGTATCTCGCGCTTTGAGCGGGGTGGTGTGTGTAACTGAATAAACGGGTAAGAGTCGCTGTATGGGGAATATCGGGAGCAGCTGGGTAATATCGCCAGACGGGAGGCCACGCGTCTGTTGACTGAAAAGCAATGGAAGAGGCATGCCGGCAATTCCAAGGCAACCAGGAGAGGCCACGGCCGAGCATATCATGCAAGTCTGGATGCGGGGCCCATGACACCAGGTTTAAGCCCCTCCTCCTCTGTGAAGAAGCCGCGCCCCTATTCCAAATGCCAGGACTGCCTGGCCCGGATCCAGAGGTATATTGTGACAAAGTTGGGCGAAGACTGGATCTTCCTGGTTCTTTTAGGTCTCACTATGGCCCTGGTTAGCTGGAGCATGGACTATGCCAGTGCAAAGAGCCTACAAGCTTATAAGTGGATGTACGGAGAGCTGAAGGGGAATGTGGCTCTGCAGTATCTGGCATGGGTCTCATATCCCATCATCCTCGTCGTGTTTGCATCCCTCTTCTGTCATCTGGTCTCTCCACAAGCTATAGGCTCGGGGATCCCTGAACTCAAGACCATTCTCAGAGGTGTGGTGTTAAAGGAGTATCTGACGCTCAAGGCATTTGTGGCTAAAGTCATTGGTCTTACGGCTGGGCTGGGCAGTGGTATGCCCATCGGGAAAGAGGGTCCTTTTGTGCATATTGCCAGTATATGTGCGGCAGTGCTGAGCAGGGTCATGTCCATCTTCACCGGTGTGTATGAGAATAGTGCCCATGTTCAGGATCTGCTGGTGTGTGCCTGTGCGGTGGGAGTGGCCACCTGTTTCGCTGCCCCGGTGGGAGGTGTGTTGTTCAGTATTGAGGTCACGTCGACATATTTTGCAGTGAGGAATTACTGGAGAGGATATTTCGCTGCCACATTCAGCGCCTTCATATTCCGAGTCCTGTCAGTGTGGAACAAAGATTCTGTTACGATAACAGCGCTGTTTCGTACAAACTTTCGTATGGATTTCCCCTTTGACCTTCAGGAGCTGCCGGCTTTTGCAATAATTGGgaTCTCATGTGGGTTTCTAGGGGCGTTCTTTGTCTATCTGAACAGACAAGTTGTTCTGATCATGAGAAGACCAACGGCTCTTACGCGATTCCTCACAAAACACCGGTTGATTTACCCTGGTGCCGTGACACTAATTATAGCCTCCTTCACATTTCCTCCGGGCTTCGGTCAGTTCATGGCTGGAGAGCTGATGCCCAGAGAGTGCATTAATTCACTGTTTGATAACTTCACGTGGACAAAGATCTGGGGTTCACCAGCTCCACCTGGACTGGGTCGCTCTGCTGCCTGGCTCCACCCACAAGTCAGCGTCTTCATCATCCTTCTCCTCTTCTTCGTCATGAAGTTCTGGATGTCTGCGGTTTCTACGACAATGCCGGTCCCTTCTGGAGCCTTCATGCCTGTTTTTATATTGGGAGCAGCATTCGGTCGTTTGGTGGGTGAGATCATGGCCACGCTGTTTCCCAACGGCATTCTGTTTGATGGGATCGTGTACCAAATCCTGCCTGGAGGCTATGCAGTGATAGgggcAGCAGCCATGACAGGAGccgtcacacacacagtttcaacAGCAGTCATCTGTTTTGAACTGACGGGTCAAATCTCACACATCCTGCCCATGATGGTGGCCGTGATTCTCGCCAACATGGTGGCACAGGGTCTACAGCCTTCCCTTTATGACTCCATCATTCAGGTCAAAAAGCTGCCCTATCTTCCCGAGCTCAGCATTGGCCACATCAGTAAATATAATATCTTTGTGGAGGACATCATGGTGAAGAAAATAAAGTTTCTGTCGCCTCAGTCCACTTACAGAGAGCTGAAAGATCTCCTGGAGTCCACGTCTCTCAAAACCATCCCACTCGTCGACTCCAAAGAGTCGATGATTCTTTTGGGCTCCATTGAGAGATGTGAACTTCAGGGCTCCTTGGACTTGTGGCTCTCAGCCGAGAGGCGGGTTTATATCCGAGGTGAGGGCTTGTCCAGCCCGGGGTCACAGGTCAACTGGGAGTCCTTCGCCTTTGTGGACGAGGAGATAGGAGAGGAGAACGGAGACAAGGGCAACACGGTCTCTGAAGAGTGCAACGGCCCGCTGGGGTCCACCAAAACCACAGACGTCTCCACTAACCACACCACATCCGGTGCCCTACAGTCTATGAGGAGGACTCTTCGTCGTGTTTTctcctcatcttcctcatcaGGGCAGACTGAGCCGGAGAGCCCTGCAGCTCCTCCTGTAGTTGAAAACATGACTCCTGAAGAGATCAAAGCCTGGGAAGAGGAAGAGCTGGATAAGCCGATTGACATTGATCAGATCCGTGTTGACCCCTCACCTTTTCAGCTGGTGGAAAGAACATCTTTGCATAAGACTCACACCCTATTCTCTCTGCTGGGTCTCAGTCATGCTTATGTAACTAGCATTGGTAAACTAGTTGGAGTGGTTGCATTAAAAGAGCTCCAGAAAGCAATCGAGGGTTCGACCCGTAGCGGAGTGCGACTCCGTCCCCCTCTGGCCAGTTTCAGAGACGCCAGACGCAAGGCCAAAAAGCCTTCTCATTCCTCGTCCGTCCCATCCTCTCCCACGCGGGACAGAGAGCTGTGGAGCGAAGGAGTGAAAAGAGAAACTAAAGACGAGTCTGATGATAGCTGTGTCCAGACGGCCGACAAAGAGTGTGATATAGCCGCGTGCAACAGCAGCTCTCAGGAGCAACTgccttctccttcttcttccacagtccctctctcctctcttcatTCTGTGCCTGAAGGAGAGGCGGATGCTGATAGGGAGAGTGACGAGGAGCCTTTATAGGTGCCGCCTTTGAGCCCAGCACGAGCCTCTGCACCTTCAGACTTGTTGATTTTCTAATCTCCGGACTGGACTAGTCTTCCTttctagatgtttttttttttttccacttgttgtctatacatttgtatatatggACAGTCGGTCTGACACATCTCACTGAACGTCTTCTCCTTCCTTTGCTTCTCCTAGTTTGTCTGCTGTACctgatatttgtaaaaatgtttgtaaaaatgaaagatttattaCCTTAACAAGCTATTTGTATGTGCTCTCACCCTTGTCTTGGTGTATGCTAACGTACTAAGGTTAGTTCAGTCATATGAAGTAATTTTTGGACTTTTAGGTTGCCtgataattttttattgtatagatgtgcaatttaaaacaatattataggTTCAATACAAGTTTaacttgttttagtaattgaaactcgccctcatgttgttccaaacttgtaagaccgttcatcttctgaacgcagattaagatatttttgattaaactggacaactgaaatgatccaggtccagaaacgtagttaATACGTCCGTAAAAATGCCAATGTAACATCAgtagctcaacttcagttttgtgacACTATTCTTTTTAGCGCAAAGAAAACACATGTAACAAAATTTACTCAATCATTCTTCTCCCGAGTTATGTCTTCCACCATTTTAAAGATTACTATCTTACTTTTATCACTTATAATAgaatatttattacttataacGCACATATGCATTGCAATACTCGGAGAGAATAACACAGCGTCTGAAGTTGAGCCACAGTTTTAATGATGTATATACTATGTTTCCGGACCTGGGATCATtttagttgtgttgctgtctatggaggggcAGACAgctttcagatttcatcaaaaatacctgaatttgtgttcagcagatgaaagaaggtcttacaggtttggaaagacaagggtaagtaattaataacacaattttcattttagggtgaaccaACCCTGTAAGTTATAATTCTAGAAATCAGTACTTTTTTAGTAACACGATACAATAAGGTTCAACATTAAGAAgctaacaatgaaaaatacatctaaaaGTTTATTGGGTAATGTTAATTGTCAAATTTATTAATACcctattaaaaagttttatcttttaatgttatataatggACTCGAGATAACATACAATGAAcggttgtatttttattaactaaaataaacaaataattgcaTTGTTCATCAGTTAATGTTTGTCGATGCATTAAATATAGTTGGCTAAAGTAGCCTTGTTGTGAAGTGTTACACGTCTTTACTaaaattagtgaaataaaaataattatagctataatataaactaaaaatgctATAACAGTATGcacataatactaaaatatcactGGCTCAATCAACAACATTTGTGACAATATTGAATAAAGCAACTGTCCCAAAAATCTATGTTAATCAATATAGTTTTTtggatttaaaagaaaaaagtgaagattatatttttataaaagcacttACATTAATTCTTCTGCATAAAGAGTTTTTTGAGCTGTATCGTCGTTTTAGAGTTTGTGTTTAGAGCATTACATTGTAATTCATTGTAACAAAGTTgtgcatttgtattttacacacaaaaggttatttttatttttattattgtgtatttCAACATTATTCTGTTGACCCCATTCACTTgcattgttagttttttttttttgtgaaattaatttttgtgcCAATTTTGTCACAATGTTGATTGATCTTGTGCTGAACCTGTGTATTAATTTAATCGCTAGACATTCGTTATGAAGCTGATTTGTTTACTACATAATTCAAGCTGCAAAGTCGTTACTCGATCACTGAATCGTTGTTTGATTATAATATACTGATGAGTATCTgattcgtttttatttgttttaatggtcTGAATAGCATGCAGACTTTTTTGCCAcgtcttaaaaatacacaaagtgcgcaatatttgctttgtttgcttCGTTTATTCTTCattatttttgggaaaaataaaggaatagCAATATTCTTGAAGGTCAGGGAGGTGTGTAGCTCGTGCAGGAAAAAGagatgggagagagagagtccgatggaggaagaggaagaggacatTGGAAGAACCGTCTTAAAACCTTCAGTAAAGCATGCATAGATATATGTATCACAGAGCACTTCTTATATCACACCTCTTACAGCTCGCTCAGTCCCAAACGAATGGATTTGTGCCTGTATAGTTTGCCGAACATGTTGACTCCACCTATTTCCACGTTACCATGAACAGATTTGATCACAACAGTGTTTCTTATCCAAAGTAGTACTTTTTCTGAATATGATTCTTCCACCAAGAGGAGACAACACAGGGTTTGAGTAATAGACAGATAACATACGAAGggaaggagagaggaggagagaaagacAAGTACGCTAGTTtacagagagaaggaaagaggtAGAACAAAGGACCGGTTACAGCATCATGCCAACAGACAGTTTTGTAGTGAAAGATGGCAGTAGAATCGTACAAAAAAATCAGTCCGTCTGTAAACACAAATGATAAACAACTACATCCAAGGAAATACATTTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 141063 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 180145 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 180145 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 492521 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 495904 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 88060 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 243322 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 247073 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 249832 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 273670 9031135 ~ 9031449 (-) True G110852
XM_043261280.1 mRNA downstream 50732 8664566 ~ 8680965 (-) True zyx
XM_043261277.1 mRNA downstream 67522 8653833 ~ 8664175 (-) False kel
XM_043261276.1 mRNA downstream 67523 8653833 ~ 8664174 (-) True kel
XM_043261281.1 mRNA downstream 78134 8651956 ~ 8653563 (-) True emg1
XM_043261279.1 mRNA downstream 81966 8643158 ~ 8649731 (-) True nop2
XM_043261829.1 mRNA upstream 1662 8759127 ~ 8767209 (-) False casp2
XM_043261827.1 mRNA upstream 1662 8759127 ~ 8767209 (-) False casp2
XM_043261828.1 mRNA upstream 1662 8759127 ~ 8767209 (-) False casp2
XM_043261826.1 mRNA upstream 1662 8759127 ~ 8767209 (-) True casp2
XM_043261437.1 mRNA upstream 17130 8774595 ~ 8780023 (-) True m6pr
XR_006252934.1 other downstream 84142 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 95475 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 415012 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 429452 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 515102 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 388465 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 513506 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1989328 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2104486 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 2104486 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile