RNA id: XM_043260991.1


Basic Information

Item Value
RNA id XM_043260991.1
length 1782
RNA type mRNA
GC content 0.49
exon number 13
gene id cpvl
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11774974 ~ 11779980 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTATTAAAGCGGTCACATGACATCGAGGCCATAAAGTCATGTGACCTCGACGCATCCACAGCGTGACAACAAGCTGATCCGCGTTTACTTCAGCTTCATGCGGCTTCGGGATTTCTGATTTCTGGCGTCTAGCTTCAAGCCTCCAGTCAGAGCTGTATAATGCTGAAGGAAACGCTGAGGCTGCTGTTCCTCGGGGCTCTTCTGCAGTCTGTCGGCTCCCGCGGCTGTTCCTCGTTCTTCTGCCGGAAATCACACCGCGTGAGCGGCTCCCGTTTTGGAGTTGACCCGGGCAAACCTCTGATGCTCACCCCTTACCTGGAGCAAGGCAAGATCGAAGAAGCCAAAAAACTGAGTTTGGTGGGACCCCTTCCTGGCGCCAATGTCAAGAGTTACTCGGGATATCTCACTGTGAACAAGACCTACAACAGTAACCTATTCTTCTGGTTCTTCCCTGCCCAGgAGAGGCCGGAGACGGCCCCGGTGCTGCTGTGGCTGCAGGGAGGACCTGGGGGCACCTCCATGTTTGGCTTGTTTGTGGAGCACGGCCCATATTTTGTGCATAAGAACCTCACGTTGGGCTATAGGGATTTCCCCTGGACATCACGGTACTCTGTTCTTTACATCGACAACCCGgttGGGACAGGATGGAGTTTCACGGAGGATGACCGAGGATTTGCCCAAAACCAGGATGATGTGGGCAGAGACTTGTACAGCGCACTGACTCAGTTCTTCCAGATATTCAGTGAGTTTCAGCTAAACCCGTTTTACGCTACAGGCGAGTCGTATGCAGGAAAGTATGTTCCAGCGattggctactacatccacaaGAACAATCCCTCCGCCAAAGTGAAGATCAACTTCAAAGGAGTGGCCATTGGAGATGGTCTGTGTGACCCTGAACTgATGCTGGGAGGTTATGCAGATTTCCTCTATCAGACGGGTCTCGTGGACGAACTGCAGAGGCAGCATGTGCAGATGCAGACGGATGCAGGAGTCAAGCTCATCCAGGAGCAGAAGTGGGTGGAGGCTTTTCAGGTTTTTGACAGCTTACTGAATGGCGATCTTTCTCCTTATCCCTCGTACTTCGAAAACGTCACTGGTTGCACCAACTACTTCAACTACATGCAGTGTCAGGAACCTCCAGATCAGGAGTACTTTTCTGGGTTTGTGAATCTGCCAGATGTTCGACGTTCCATCCATGTAGGAAGTCTCACCTTCAATGACGGCTCCGATGTTGAGAAGCATCTTCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTTCTCATGGACAACTATAGGGTGTTGATCTACAGCGGGCAGCTTGATGTCATCGTAGCAGCTCCTCTGACCGAGCGCTTCCTGCCCACGGTGAACTGGACCGGAGCGGACGAGTATAAAAAAGCAGAGCGCTTCCACTGGAAGGTCCAGCCCAGTGATACTGAAGTGGCAGGTTACGTCCGACAAGTGGGGGAATTCTTTCAGGTAATTGTGAGGGGAGGTGGGCACATTTTGCCTTACGATCAACCAGAGAGATCATTTGACATGATTGACAGGTTCCTTTCTACAGATGGATTCTCATTACATTGATAgactaaactaaaactgaatgTAAAGTAACCACTGAATGAATCATTGTTCAgttgtttaatgtgtttttcaatGCAAAGGTTTGTGCGCTATTATGAAAAGAGTCGGgggttatatttttattggactgtgtgtttttattgtatatgaTTCGTTTTTGATTAAAGGTTGATTTAAGTATAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K09645 CPVL; vitellogenic carboxypeptidase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164770 lncRNA downstream 793 11773919 ~ 11774181 (-) True G111623
TU164699 lncRNA downstream 108700 11662918 ~ 11666274 (-) True G111559
TU164700 lncRNA downstream 108700 11662918 ~ 11666274 (-) False G111559
XR_006252859.1 lncRNA downstream 205237 11562878 ~ 11569737 (-) True LOC122361126
TU164642 lncRNA downstream 230642 11543916 ~ 11544332 (-) True G111516
TU164772 lncRNA upstream 807 11780787 ~ 11781172 (-) True G111625
XR_006252803.1 lncRNA upstream 3715 11783695 ~ 11784334 (-) True LOC122360397
TU164789 lncRNA upstream 38479 11818459 ~ 11819778 (-) True G111639
TU164803 lncRNA upstream 85700 11865680 ~ 11867315 (-) False LOC122361049
TU164819 lncRNA upstream 162384 11942364 ~ 11943955 (-) True G111661
XM_043261757.1 mRNA downstream 70146 11687295 ~ 11704828 (-) True jazf1b
XM_043261454.1 mRNA downstream 112742 11653213 ~ 11662232 (-) True hibadhb
XM_043261455.1 mRNA downstream 126105 11646850 ~ 11648869 (-) True hoxa13b
XM_043260441.1 mRNA downstream 133465 11639005 ~ 11641509 (-) False hoxa11b
XM_043260440.1 mRNA downstream 133465 11639005 ~ 11641509 (-) True hoxa11b
XM_043260955.1 mRNA upstream 40807 11820787 ~ 11823551 (-) True fkbp14
XM_043260860.1 mRNA upstream 59921 11839901 ~ 11854994 (-) False colq
XM_043260859.1 mRNA upstream 59921 11839901 ~ 11854816 (-) True colq
XM_043260858.1 mRNA upstream 75041 11855021 ~ 11865183 (-) True hacl1
XM_043261989.1 mRNA upstream 85700 11865680 ~ 11867315 (-) True LOC122361049
TU164609 other downstream 363197 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 488542 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 891763 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 908546 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1026674 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1874080 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2454574 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3129345 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3688500 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3688500 15468480 ~ 15496375 (-) False rps19

Expression Profile