RNA id: XM_043261001.1


Basic Information

Item Value
RNA id XM_043261001.1
length 614
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122360415
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21038523 ~ 21039535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAttgttatattgtgtttttcatcTTCAGGTAATCTACGTCGCTCGGAATCCTAAAGATGTTTTGGTTTCATCTTTCCACTTTCATCAAATGGCAAGTTTCCTTGATGACCCCGGAACATTTGAGGAATTTGTTGACAAGTTCCTGTCAGGAAAACTTTTGTTCGGTAAGTGGACCGATCATGTGAAGAGCTGGCGAAACCCTGAGCTCGGCGACAGGATCCTGTACATCACCTACGAGGAAATGCTTCAGGACCTCCGTGAAGTCCTGGGCCGGATTTTGCGGTTTCTCGGCCGGGAGCTCAGCGCCGAGGCTCTGGATAGAGTGGCCAATCGCAGcactttcaaaaatatgaaaacgaACAAAATGTCAAACTACTCTCTGGTGCCAGAAAACATTATGGACAACAAGAAATCGCCCTTCCTCAGAAAAGGTATCGCTGGAGACTGGAAGAATCACTTCAGCCCTGAACTCGATGCCAAGTTCACAGCTGTGGTTCGAGAGGAAATGAAAGGAAGCAACATCAGGTTCCCGTGGGATGAAGATTGAGTGAATCTCTTTTAATGGCGTCTCGGTGCGCATCAAAATAAACAGTCATTGATGGAACATGTGA

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169735 lncRNA downstream 203288 20781803 ~ 20835235 (-) True G114947
TU169727 lncRNA downstream 269436 20768744 ~ 20769087 (-) True G114943
TU169699 lncRNA downstream 312852 20724171 ~ 20725671 (-) True G114924
TU169682 lncRNA downstream 358302 20677054 ~ 20680221 (-) True G114908
TU169622 lncRNA downstream 401183 20636125 ~ 20637340 (-) False scn1ba
TU169792 lncRNA upstream 78614 21118149 ~ 21120540 (-) False G114997
TU169793 lncRNA upstream 78614 21118149 ~ 21120584 (-) True G114997
TU169853 lncRNA upstream 243929 21283464 ~ 21314746 (-) True G115042
TU169865 lncRNA upstream 291477 21331012 ~ 21331358 (-) True G115051
TU169954 lncRNA upstream 349280 21388815 ~ 21389147 (-) True G115098
XM_043261002.1 mRNA downstream 172299 20826228 ~ 20866224 (-) True LOC122360416
XM_043260062.1 mRNA downstream 271158 20764638 ~ 20767365 (-) True si:dkey-11p23.7
XM_043260711.1 mRNA downstream 296851 20736949 ~ 20741672 (-) True aste1a
XM_043260713.1 mRNA downstream 332193 20699997 ~ 20706330 (-) True ubxn11
XM_043260715.1 mRNA downstream 351646 20681425 ~ 20686877 (-) True mtdhb
XM_043260999.1 mRNA upstream 16765 21056300 ~ 21102468 (-) True LOC122360412
XM_043261534.1 mRNA upstream 63192 21102727 ~ 21105217 (-) True LOC122360714
XM_043261386.1 mRNA upstream 81234 21120769 ~ 21138481 (-) True LOC122360614
XM_043261888.1 mRNA upstream 99635 21139170 ~ 21146077 (-) False dek
XM_043261890.1 mRNA upstream 99635 21139170 ~ 21146043 (-) False dek
TU169801 other downstream 21418 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 384949 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 586073 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 586073 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 870909 20166795 ~ 20167614 (-) False G114715
TU169949 other upstream 336355 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 369409 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 370425 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 370756 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 520686 21560221 ~ 21561060 (-) True G115116

Expression Profile