RNA id: XM_043261003.1



Basic Information


Item Value
RNA id XM_043261003.1
length 1557
RNA type mRNA
GC content 0.42
exon number 9
gene id nt5c3a
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1656548 ~ 1662627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGCCTATATAAGTGTGTGTCAGacaagaaacattttcttctGTGTTTGATACAACGCCTGGAAGAGAAAAAGATGCCAGAGTTTGAGAAGAGCACAGTTCACATCAGAGACCCTGAGAGGGTGGAGCAAATAATTTGCAGTCTCATTAAAGGTGGAGCATCGAAACTGCAGATCATCACAGATTTTGATATGACGTTAAGCAAGTTTGCCGTCAACGGAAAACGCTGCCCAACATGTCAtaATATCATTGACAACTGCAAGCTGGTGACAGAAGAATGTAGGAAGAAGCTGCTTCAACTAAAGGAGACGTATTATCCAATAGAGATTGACCCACATCTGACCATGGAGGAGAAATATCCATTTATGGTGGAATGgtaTTTTAAGTCTCACACGTTATTGGTAGAACAGAGATTGCAGAAGGACAAACTTCCAGAAGTTGTGAGAGAGTCGGATGTCTGTCTCAGGGAAGGGTACGAGCAGTTCTTTGACCGGCTGCAGCAGCACAACGTTCCCATGTTCATCTTCTCCGCCGGTCTGGGAGATGTGCTTGAGGAAATTATCAGACAAGCTGGCGTATACCACACCAACGTCAAAGTCGTGTCCAACTTCATGGACTTTGATGATAATGGTGTTCTGAAAGGCTTCAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGTGCCCTGAGGAACACGGAGTATTTCAAACAACTGAAGGACAATGGAAATGTTATTCTGCTGGGAGACTCTCTCGGTGATCTCACCATGGCAGATGGTGTGCCCAACGTAGAGAACATCCTCAAAGTCGGCTTTCTTAATGATAAGGTGGAGGAACGGTTAGAAAAGTACATGGACTCTTACGATATAGTTCTGGTGAGGGATGAAACACTTGAAGTGCCTAATTCCATACTACAGAAGATCTTATAATAGACACCGCAGAGCCACCGGCCCGCAGCACAGACTCAAATTCCAGGGTATTCGGAGTCACCTGGATAATTCCAGCACTGAGGCCAGCCTTCATCTGTCGACATGCCTCACATGTTCACAAGCCATCAATACTTCAcattttgacctttttaaaaTTTCGTCCTCTCACCATAATGAACTATTTTAGTCGACACATACACCTGGGATCTTGGTGTAAATGTATTATCAAAAGAGAAatgcatcatttgcatattGGTAAAATTATCGTTTGTAGTATTTTTGATATGGAAATATGTGTGTTCAGTGTCTGCAATAAGAGTTGGGACTGTGAACAGTACAAAGCCCAGCTGACATCGTCATTCTTAAAATGATGCGCACTTTTAAAGTCTGAAGAACTGTCAAAAGATCTCATGGAACTTTGTATTTCATGCGAGGATGCAGGCTGCATGCACAGATCAACAGTAAAGCAATACTGTAAATTGATCCAAAAGCCATGATGTTTCATGTATTGTGTGCTTTGTCCCGTGAGAATGTTTTAGCATAAACGATCAACCTTTCGGTGTTAACGTTTGCCTAACTTCCTGATTACCTGTGAGGTAggcaataaagttttttttttctctgcaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 10399 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 10399 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 12375 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 13505 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 15236 1640777 ~ 1641312 (-) True G109440
TU161743 lncRNA upstream 76295 1736188 ~ 1997189 (-) False G109460
TU161742 lncRNA upstream 76394 1736287 ~ 1997307 (-) True G109460
TU161744 lncRNA upstream 76394 1736287 ~ 1997189 (-) False G109460
TU161747 lncRNA upstream 81227 1741120 ~ 1964161 (-) False prdm1a
TU161750 lncRNA upstream 157369 1817262 ~ 2078943 (-) True G109465
XM_043260684.1 mRNA downstream 2021 1648367 ~ 1654527 (-) False si:ch73-341k19.1
XM_043260687.1 mRNA downstream 2021 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043260686.1 mRNA downstream 2033 1648367 ~ 1654515 (-) False si:ch73-341k19.1
XM_043260624.1 mRNA downstream 106617 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA downstream 106725 1545287 ~ 1549823 (-) True pmvk
XM_043260251.1 mRNA upstream 25011 1684904 ~ 1704721 (-) True foxo6a
XM_043261290.1 mRNA upstream 58142 1718035 ~ 1720115 (-) True med18
XM_043260182.1 mRNA upstream 81335 1741228 ~ 1750972 (-) True prdm1a
XM_043261422.1 mRNA upstream 340888 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 1040428 2700321 ~ 2700949 (-) True LOC122360106
TU161510 other downstream 773796 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1023651 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1361563 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1378074 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1378469 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1468168 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2434864 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3572318 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3575753 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3699617 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile


XM_043261003.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_043261003.1 Expression in each Bioproject

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XM_043261003.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.