RNA id: XM_043261004.1


Basic Information

Item Value
RNA id XM_043261004.1
length 1789
RNA type mRNA
GC content 0.44
exon number 9
gene id nt5c3a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1656548 ~ 1662627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCATCCGGGTATTTTATGCATGCAGACAGTTCTAACAGCGGACATGATACGTACTACATAGCGCTGAAACGGATAGTGTGTAGGGCGGCTGTGTACCGTTCCGACACACCCCGTAAACGTAGTGTCTGCGCgacaaaatttgttttttaaccGGAGAGCGGACATGGACAGAAACGCTGTGGTTAAAGTCGGCGCGATGGCGAGCGCCACTATGTGCGCGCTGTTCGGCGGAGTCGTGTTCGCGCAGTACATTTTCACCAAGAAACAGAGAGCAGGAAAGAAAACCAAGATAATCGAAATGATGCCAGAGTTTGAGAAGAGCACAGTTCACATCAGAGACCCTGAGAGGGTGGAGCAAATAATTTGCAGTCTCATTAAAGGTGGAGCATCGAAACTGCAGATCATCACAGATTTTGATATGACGTTAAGCAAGTTTGCCGTCAACGGAAAACGCTGCCCAACATGTCAtaATATCATTGACAACTGCAAGCTGGTGACAGAAGAATGTAGGAAGAAGCTGCTTCAACTAAAGGAGACGTATTATCCAATAGAGATTGACCCACATCTGACCATGGAGGAGAAATATCCATTTATGGTGGAATGgtaTTTTAAGTCTCACACGTTATTGGTAGAACAGAGATTGCAGAAGGACAAACTTCCAGAAGTTGTGAGAGAGTCGGATGTCTGTCTCAGGGAAGGGTACGAGCAGTTCTTTGACCGGCTGCAGCAGCACAACGTTCCCATGTTCATCTTCTCCGCCGGTCTGGGAGATGTGCTTGAGGAAATTATCAGACAAGCTGGCGTATACCACACCAACGTCAAAGTCGTGTCCAACTTCATGGACTTTGATGATAATGGTGTTCTGAAAGGCTTCAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGTGCCCTGAGGAACACGGAGTATTTCAAACAACTGAAGGACAATGGAAATGTTATTCTGCTGGGAGACTCTCTCGGTGATCTCACCATGGCAGATGGTGTGCCCAACGTAGAGAACATCCTCAAAGTCGGCTTTCTTAATGATAAGGTGGAGGAACGGTTAGAAAAGTACATGGACTCTTACGATATAGTTCTGGTGAGGGATGAAACACTTGAAGTGCCTAATTCCATACTACAGAAGATCTTATAATAGACACCGCAGAGCCACCGGCCCGCAGCACAGACTCAAATTCCAGGGTATTCGGAGTCACCTGGATAATTCCAGCACTGAGGCCAGCCTTCATCTGTCGACATGCCTCACATGTTCACAAGCCATCAATACTTCAcattttgacctttttaaaaTTTCGTCCTCTCACCATAATGAACTATTTTAGTCGACACATACACCTGGGATCTTGGTGTAAATGTATTATCAAAAGAGAAatgcatcatttgcatattGGTAAAATTATCGTTTGTAGTATTTTTGATATGGAAATATGTGTGTTCAGTGTCTGCAATAAGAGTTGGGACTGTGAACAGTACAAAGCCCAGCTGACATCGTCATTCTTAAAATGATGCGCACTTTTAAAGTCTGAAGAACTGTCAAAAGATCTCATGGAACTTTGTATTTCATGCGAGGATGCAGGCTGCATGCACAGATCAACAGTAAAGCAATACTGTAAATTGATCCAAAAGCCATGATGTTTCATGTATTGTGTGCTTTGTCCCGTGAGAATGTTTTAGCATAAACGATCAACCTTTCGGTGTTAACGTTTGCCTAACTTCCTGATTACCTGTGAGGTAggcaataaagttttttttttctctgcaa

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 10399 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 10399 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 12375 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 13505 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 15236 1640777 ~ 1641312 (-) True G109440
TU161743 lncRNA upstream 73561 1736188 ~ 1997189 (-) False G109460
TU161742 lncRNA upstream 73660 1736287 ~ 1997307 (-) True G109460
TU161744 lncRNA upstream 73660 1736287 ~ 1997189 (-) False G109460
TU161747 lncRNA upstream 78493 1741120 ~ 1964161 (-) False prdm1a
TU161750 lncRNA upstream 154635 1817262 ~ 2078943 (-) True G109465
XM_043260684.1 mRNA downstream 2021 1648367 ~ 1654527 (-) False si:ch73-341k19.1
XM_043260687.1 mRNA downstream 2021 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043260686.1 mRNA downstream 2033 1648367 ~ 1654515 (-) False si:ch73-341k19.1
XM_043260624.1 mRNA downstream 106617 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA downstream 106725 1545287 ~ 1549823 (-) True pmvk
XM_043260251.1 mRNA upstream 22277 1684904 ~ 1704721 (-) True foxo6a
XM_043261290.1 mRNA upstream 55408 1718035 ~ 1720115 (-) True med18
XM_043260182.1 mRNA upstream 78601 1741228 ~ 1750972 (-) True prdm1a
XM_043261422.1 mRNA upstream 338154 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 1037694 2700321 ~ 2700949 (-) True LOC122360106
TU161510 other downstream 773796 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1023651 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1361563 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1378074 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1378469 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1465434 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2432130 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3569584 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3573019 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3696883 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile