RNA id: XM_043261009.1


Basic Information

Item Value
RNA id XM_043261009.1
length 2057
RNA type mRNA
GC content 0.38
exon number 6
gene id taf12
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24836086 ~ 24839787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCCCTAGTTCCACAGACAAAGtgtaagcctagtcctagactaaaatgtaaatctgagccgtttaaacaaacaaacaaacttgcACTGACCTCAAAATttatcagtgcctttgtttttcctaagcatgttttttttaattaaattacttaaatgacctaattgaactatggcctaatcctggcttattCTAAACCCTGTCTGTAAAACCAGGCCTATTTGTGTCAACATGAGATTAGTGTGATGATATAATTTATCTTGTTTGTGCAAACATTTTCCAGCTCCTGGTTTGACGGTGTAAATcctttcaattttaatatataatatacccCTTAAACCGTAATCTCACATCGAGAAAGCTTTTAggcagttaaaataaaataaagatttccattgtaaattcatattattctgttttgcttttcaaatTGAGAGAAGAATTTTAACTATTGTCCCCATATAACGTAACGTAAACTCAAAACATTCCTTTAGTACAAAATGCTAATTTGGAATAGACGACGTCtaggcttttattttgtaaaacacgTTGTTTGAGATCTCGCGATAATTCAGCAGAGCTCCGTTCGCCAGAAGAGGCGCCTGTAGTAGAAGGAATATCAACATCAACTTAAATTGGCTTTTGAATATTTCCAGCTCATAAACGTCGAAGATGGGTAGATAATACAGAATTTGTCGGATCAGctaAACAGATCGCACTCTGGTTTTGAAGAGGCTCCTGACAGATATATCTTGACTAGCATAGTATGACCCAGTACCCACCACAGACCAGTCGCTCGAACTTCTACACTGTTGTGAAAGCAGAAGCCTCTTCAACGCCACCCATCTCCACCAACATGGCCAACAGCACCGTCGTCCCCGGGAAAGTTCCAGGCACCCCCGGTCCCGCTGGAAGACTGAGCCCTGAAGGCACTCAGGTGCTTAGTAAGAAGAAACTGCAGGATCTTGTGAGAGAAATTGATCCTAATGAGCAACTCGATGAAGATGTGGAGGAGATGCTCTTGCAGATTGCCGATGACTTCATCGAGAGCGTGGTGATGGCGGCGTGTCAGCTTGCCCGACACAGGAAGTCAAACACTCTTGAAGTGAAAGATGTCCAGCTACACCTGGAACGACAGTGGAACATGTGGATTCCTGGTTTTGGTTCAGATGAGATCCGACCGTATAAGAAGGCTTGCACCACAGAAGCTCACAAACAGAGAATGGCATTGATCCGCAAAACAACCAAAAAGTAGCAAGATGGGAAGCAccaataaacttttttttttttttttttttttttttttttctgcaagttTTGGAAGTGGAGAGGGATTGAACCtatatatgttatgttaatCAGAGAGGCAGAATGCGTTGTACTATTTACAGTACGGTTCAATTTTTGCATTCAAAAGGTGCATAGGAAGTGACACAAATTGTCTGTACAGTTCACTTTGTGACACAAACCACcatgtgaacattttatttggGCACCTTGGTCTCTGACTTGGTGCTATACTGgggtttattatattatagagtcTCACAGGCTTCTGTGAAAAAACAGTTGTTTATTGTTTCTCCCACAAACcatattttcattcatatttcgTGTATAGCTGAATCGTCATGCAGTCACACAACTTTTACTCAGCTGGCATTAATAGCTATGCACAATTACAATCATCACGTGTCTGATTTGTTCATAGTGTTCGGTGTTATAGACTTCATCACTTAagtaatatttagtattatagAGGAAATCTTTAGTGTGTGACTTTCTAAAGGCAAACAGTCATTTTTACCGGAGAAATAAATACCACTTTCCCCATTTAATTCATTGCATTGGAGCTAGTAAGAATAATACAGAATGGTTAATTGGTTGGAGAGttatatatgtgtaatgtaTGGGAAATTGGTGCATAAACCCTTCCTACTGTGGGTTTGTGGGCAGATTTTCTGTGGAGTTAAACTGAGTATAAACTTTTTTTGCCATGTATCACAGTGTTTTACAGTCTCTTgtttttcatgaataaaaaaacaactaattgtGATTTA

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03126 TAF12; transcription initiation factor TFIID subunit 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171502 lncRNA downstream 722 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 2128 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 12676 24821501 ~ 24823410 (-) True G116174
TU171248 lncRNA downstream 362721 24414226 ~ 24473365 (-) False serinc2l
TU171247 lncRNA downstream 362721 24441327 ~ 24473365 (-) False serinc2l
TU171572 lncRNA upstream 239480 25079267 ~ 25082596 (-) True G116212
TU171618 lncRNA upstream 337665 25177452 ~ 25178607 (-) True G116242
TU171609 lncRNA upstream 371606 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 371606 25211393 ~ 25557473 (-) False G116237
XR_006252863.1 lncRNA upstream 824932 25664719 ~ 25702534 (-) False LOC122361130
XM_043260835.1 mRNA downstream 27416 24626594 ~ 24808670 (-) False ptprub
XM_043260834.1 mRNA downstream 27416 24626594 ~ 24808670 (-) False ptprub
XM_043260832.1 mRNA downstream 27416 24626594 ~ 24808670 (-) False ptprub
XM_043260831.1 mRNA downstream 27416 24626594 ~ 24808670 (-) False ptprub
XM_043260833.1 mRNA downstream 27416 24626594 ~ 24808670 (-) False ptprub
XM_043261006.1 mRNA upstream 142 24839929 ~ 24846153 (-) True ctps1b
XM_043260492.1 mRNA upstream 53059 24892846 ~ 24906521 (-) False LOC122360137
XM_043260493.1 mRNA upstream 53059 24892846 ~ 24906512 (-) False LOC122360137
XM_043260491.1 mRNA upstream 53059 24892846 ~ 24905755 (-) False LOC122360137
XM_043260490.1 mRNA upstream 53059 24892846 ~ 24905755 (-) True LOC122360137
TU171232 other downstream 508113 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1160788 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1226245 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1311704 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 1902119 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 828032 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1539885 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1967333 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1970530 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1970530 26810317 ~ 26812909 (-) False G116632

Expression Profile