RNA id: XM_043261010.1



Basic Information


Item Value
RNA id XM_043261010.1
length 3801
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122360424
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21360793 ~ 21365201 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgcgtttttttattcttggaAATAAACTGCAGATTTATAACAGCCTTTATGACTGCCTgagttggtgtgtgtgtggttatcATAAGGTTTAAAGCGAGTAGTTAAAGGGTTAGAGTTATTATGAAGGCATAAACGTTAGTTTTACTGGGTTATGAGGTCAATGATTTAGGTTTGCGGTCAACATAAATGACCTTTGACTTTCTCTGTTAAACTGACCCATGTGATGACTATGCATGGCACGACCAGTGGGTCAACTTGGTAATTCTGCAgagtttcacaaaaaaaaccacCAAACTACTTTTTGTAGAGGATACATATCACATTATCAAACCTGAGGAAGCGGTGACCTCCGGATTATCAgcataattttaatgaaatccacTAAAATATAAAGACAGCATCCTATACCGTAAATATAAGCCTTCTATCTTGCTGTTGCCACATTGcttgctttttctttaaaaaaaaaaaaactgaaaagcatacattttgaatcaaatattGCATTGTGTGGCACTTCAGCCGAGCGCTCTAGTAAATACTAAAAGTGCCAGCATGCATTTCTCTGTTTTCATAGCACCAAAGAATCCCAAGGATGTTTCCTGCGCTGTGTGAAAAAAGTGGCCAACGGATGATTCAGCACATCTACATTAGGCTCGCTAACTGTATTTCTTGTTTCTGCAGAGAATAGCCTTGTCATCTAAACAGGATACCCATGCAACACACTAAAACTGccaatgcttttattaattgcaACACTGACAACAGTTTGGACACCATGGGGTAGCCTGACTTCTGAGATCATCAcagctctttgttttgttttaaagactttcatttttcatgttcaTTGTTTCTAATCAAGTTGTAGGTTATTTCTGCTTTGATCTGAATAGATGGCAATATGTTTAActtcatattattaattaatattattattataccaaTTAggctattcattttaataattaacattaataatatatgaattCTGAATGACATATGAattctattttaacatatatacatataaatatgcaatatgctATTTTCTATTGTTTTGTCCTTCTTTCTGGTTAGACGAATATGTTATCAGTATAACTCTCTGCTGCCCCCAGGTGCCTCTGTATACGCACAAAAAGGATAAAgacaaatggattttttttttctttcatcggGTATTTTGGCAGACTTTGTTTGCGTGTAGTCGCGTGTCAGTGATACACACAATTGCTTTTGACCGTGTTGCGGTGCTCGCATAACGGAGCCACCGGCTGATTGCTCCCGATTGATCATTTTATAGCTTCTCTAATGATTACGCCAGCATAGTAATTGAGGAAAAAGTAAACAATAGCCGCTGGGAAATCCAGTGACTGCAGCAGCGCGCGTCAGACCGGCATCACTCCTCGCGCTCAAGGCTGTCCAGTCCGTGCACGCGCTTAATGTAAAGAGCAGTCAGAGACAGGGGCTTGTAGTGGACAATTATCCGTTTCTCCGAACGCAAGACTAGTGCAAAGTTAAGGGGTTTGCTTGTAAACTGtaaaagatagagagagagagagagagagaagtagaATATTCCGTACTCGTGCGTAATATTTTCTCAGATGTGCTGGAAGACAGCGAGAAGTTGGAGATATGGATTTTCGTTGTGAGGAGTGAATTTCTCAATTTGGACAGACCACCATGAGCAGGTTGCCGTGCCTTGCCTCCGAGCCAAAAGGAGAAATACCACTGTGCCACTGACAGGAATTTTACGCGCAGCTGAACAAGGATGCCAGAGGAGCTCGCAAACTGCAGCGTGTGTTGCTGTACCACCACCAATAAGATACTCATGGTGGTCTTCATGATATCACTGATCCTTGCTATACTCTTCGGGAACCTCCTCACGTTAGCAGTGGTCGTTGGAACTAAACACTTCCACACTCCGCAGGGTTATCTAAAAGCCTCGCTGGCCGTGGCGGACCTGGCTGTGGGGATTTTTGTGGTGCCCGTCTCCGTTTACGCAGAGGTGTCTCTCATGATCTACAATTCAATGCCAGAGTGGACTGCGCGCAATTCCCAAACCGCACCTCTCCACCCGTGCAATTTCATCGGACCCGTGTTTGCGGGGTGCACTTTAGTTTCCATTACAACAATTTTCCTCCTGACCATTGAAAGGAGCATAGCCGTTTTGAGGCCGCTGCACAAGGAATCGGTCATAACTAAAAAGAGAACAAGCATACTGATAGTCTTTTCCTGGATGGGCAGTTTTTTCCTCGCAATATCTCCGTTGGTTTTCAGCGACGAAATCGCGCTGGAGTACAATCCTTGCAGCCGCATGTGCAATTACGCGCTCGGAAGCGCAGACTTCCCTTCCCAGGCTTGGAACATTCTTTTACTCTTCCCCGCCTTTGACTTTACGCTGCTCGGAGGTACTATTGTCATCAATATCATTTCCCTCACCACGATCAGACAGCattcaaaaagaagaaaacaccTCGCAGAGACCGAGAGCCAAAGCTCGACGAAACCAACCTTCTCCGACATCAAAGCCGCCAAGACTATAGGCACCCTGACGCTGGCTTTCACCGCTTCTTTCACTCCCATCGCCGTGTTTGTTGTCGGAAACGTGCTGGGAAACGAATGGTGCAATTTTGCGTTTTTTGCCTTTTGGATTTTGACCTCGAACAGCTGCTGCAATGTTATTATATACGGCGCGAGAGACCAGAAGTTCAGAAGTCGCGCGTATCAGCTGCTCACATCCGCTCAACTGAACACTGCGCCTAAAAAGACTGAGTATGAAAACACTGCAAATGGCGGGAAAGACAACGAGGATGTAGTCAAGCAAACCTAGTTAAAGATATTATTGAGCGGTAGCCCGGTTCGGGTGGTGCTTGCTGTATTTATTACAGACCCCTTAAGCTAGCATCTGGTTTCTAGCTGGACATTAGATGAACCAAGTTGGTTAAATTGGCTCAAAGGTCTACCAGACCAGCTAGAAACACAGCTGCCAACTTAACCTGCGAGCTTTTCCAGTCCCCCTGGATCAACTTAAGGCTAAATGGCTTACTCAAGACGCATTGAGGACATGGATCATTCCTTGTAATCAAAAGTTTTGATTATCATCCTATAGATCTCCAACCATTAAGCCACAGGATGCCTATTGATGCCAGCGTGATTTAATGCCTTCATAACCACCTGTTAAATGTCACTATTCTCAGGTCACctcttttgatttattcaaaaatgtgcaCGATTGCATTATATCACGGGATTTCACCTTGCATTTGAATATATCGATCATGGTAGTCCCAAGAAAAAAGGGTGTTCGTAGATATATGGAAGCTTCTCTAGAATTTTAATTTGGTATCTTTTTCATTGTGGAGAACTGATACTTTGAGACATTGTGGTTCGaataaaatctgtgtatatACACTGGGCAAGAACAAGGATTGATGTAAACACTTGGGAGCATTAAAGTACACTTTATTATAGGATTAATCGTGTATTGGCTTATGTAATAAAGGTTAGTGTTGGAAGGCTGtgtcataaaaaacaaaagcattttccCATCAGTGTATTCATATCACATGCGTGCTTTGTTTCTCTTATCATTCAAGGGCCAGGacattaaaccaaaaaacaccatgtttaaagtttattatttatttaggccAATAttcttttgcacatttttgtactgtacacaataaaatattcttcattaaatgtctgttttaatgAATCGAATTCTAATCATGTTTTTGGTGATTTGTAAAGTACATCTGACAATGACAgtccattaaaaatgtttaactt

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU169865 lncRNA downstream 29435 21331012 ~ 21331358 (-) True G115051
TU169853 lncRNA downstream 46047 21283464 ~ 21314746 (-) True G115042
TU169793 lncRNA downstream 240209 21118149 ~ 21120584 (-) True G114997
TU169792 lncRNA downstream 240253 21118149 ~ 21120540 (-) False G114997
TU169735 lncRNA downstream 525558 20781803 ~ 20835235 (-) True G114947
TU169954 lncRNA upstream 23614 21388815 ~ 21389147 (-) True G115098
TU169974 lncRNA upstream 240779 21605980 ~ 21614179 (-) False cenpw
TU170024 lncRNA upstream 459997 21825198 ~ 21825437 (-) True G115155
TU170039 lncRNA upstream 508625 21873826 ~ 21874051 (-) True G115170
TU170171 lncRNA upstream 865039 22230240 ~ 22237066 (-) True G115262
XM_043260618.1 mRNA downstream 14193 21333650 ~ 21346600 (-) True nagpa
XM_043260869.1 mRNA downstream 30802 21322911 ~ 21329991 (-) True tp53inp1
XM_043260273.1 mRNA downstream 39706 21315779 ~ 21321087 (-) False ccne2
XM_043260272.1 mRNA downstream 39706 21315779 ~ 21321087 (-) True ccne2
XM_043262084.1 mRNA downstream 191389 21167981 ~ 21169404 (-) True LOC122361118
XM_043261819.1 mRNA upstream 40062 21405263 ~ 21408968 (-) False cfap418
XM_043261820.1 mRNA upstream 40427 21405628 ~ 21408967 (-) False cfap418
XM_043261821.1 mRNA upstream 40762 21405963 ~ 21408964 (-) True cfap418
XM_043260351.1 mRNA upstream 44758 21409959 ~ 21411771 (-) True mettl6
XM_043260090.1 mRNA upstream 47667 21412868 ~ 21431807 (-) True rspo3
TU169801 other downstream 343688 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 707219 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 908343 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 908343 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 1193179 20166795 ~ 20167614 (-) False G114715
TU169949 other upstream 10689 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 43743 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 44759 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 45090 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 195020 21560221 ~ 21561060 (-) True G115116

Expression Profile


XM_043261010.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_043261010.1 Expression in each Bioproject

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XM_043261010.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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